mRNA_H-paniculata_contig2121.5561.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2121.5561.1
Unique NamemRNA_H-paniculata_contig2121.5561.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A8F0F7Q2_9PHAE (Ribosomal protein S4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7Q2_9PHAE)

HSP 1 Score: 365 bits (936), Expect = 7.410e-127
Identity = 189/205 (92.20%), Postives = 195/205 (95.12%), Query Frame = 1
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 615
            R+ GPRLKIIKRFGELPGLTTKI+ DEKGK  NDKQK K SAYKIRLNEKQKLRYNYGVTESQLLRYVKEARR+KGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFV+HGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIK NL QNKGLNINP++SNSHLEFDQ LLTGKI NLVKREDLSFNINDMLVIEYYSRLS
Sbjct:    3 RYIGPRLKIIKRFGELPGLTTKILIDEKGKPPNDKQKTKVSAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRKKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVSHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKSNLRQNKGLNINPELSNSHLEFDQKLLTGKIKNLVKREDLSFNINDMLVIEYYSRLS 207          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A8F0JYE9_9PHAE (Ribosomal protein S4 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JYE9_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 3.040e-106
Identity = 159/208 (76.44%), Postives = 184/208 (88.46%), Query Frame = 1
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEK---GKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 615
            R+ GPRLKIIKRFG+LPGLT K++  ++   GK+  D++KPKASAYKIRLNEKQKLRYNYG+TESQLLRYVKEARRRKGLTGF+LMQLLEMRLDN+IFRL LAPTIPAARQFVNHGHV+IN K+VNIPSFQC+PNDLISFS K KT+ L+K NL + +G N N +VSNSHLEFD  LLTGKI+NL++R+DL F INDMLVIEYYSRL+
Sbjct:    3 RYRGPRLKIIKRFGDLPGLTRKVVVKKQSSQGKDTADQKKPKASAYKIRLNEKQKLRYNYGITESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNVIFRLGLAPTIPAARQFVNHGHVIINKKRVNIPSFQCRPNDLISFSTKPKTIALLKSNLNEAEGSNSNDNVSNSHLEFDPKLLTGKILNLIQRKDLRFKINDMLVIEYYSRLA 210          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A8F0FB40_9PHAE (Ribosomal protein S4 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB40_9PHAE)

HSP 1 Score: 304 bits (779), Expect = 6.810e-103
Identity = 158/208 (75.96%), Postives = 178/208 (85.58%), Query Frame = 1
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEK---GKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 615
            R+ GPRLKIIK+FGELPGLT K++  ++   GK++ND++K KAS+YKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQFVNHGHVLIN KKVNIPSFQC+PND+I+FS K KT+ L+K N       N N D+SNSHLEFD   L GKI NLVKR+DL F INDMLVIEYYSRL+
Sbjct:    3 RYRGPRLKIIKKFGELPGLTRKVVVKKQNSSGKDINDQKKSKASSYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINEKKVNIPSFQCRPNDVITFSTKPKTITLLKSNSNHEDNSNSNNDISNSHLEFDYNSLKGKIKNLVKRKDLRFKINDMLVIEYYSRLA 210          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A0S0FBJ9_COSCS (30S ribosomal protein S4, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A0S0FBJ9_COSCS)

HSP 1 Score: 300 bits (769), Expect = 2.270e-101
Identity = 155/208 (74.52%), Postives = 177/208 (85.10%), Query Frame = 1
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEKG---KNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 615
            R+ GPRLKIIKRFG+LPGLT K++  ++G   K   +++ PKASAYKIRLNEKQKLRYNYG+TESQLLRYVKEARRRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQ VNHGHVL+N K+VNIPSFQC+PND ISFS K K + L+K NL Q +    N ++ NSHLEFDQ LLTGKI+NLVKR+DL F INDMLVIEYYSRL+
Sbjct:    3 RYRGPRLKIIKRFGDLPGLTRKVVLKKQGTQGKEATEQKTPKASAYKIRLNEKQKLRYNYGITESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQIVNHGHVLVNKKRVNIPSFQCRPNDSISFSVKPKIMALLKSNLNQGENSTSNDNILNSHLEFDQKLLTGKILNLVKRKDLRFKINDMLVIEYYSRLA 210          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A6B7EXY2_9PHAE (30S ribosomal protein S4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EXY2_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 8.710e-100
Identity = 151/204 (74.02%), Postives = 175/204 (85.78%), Query Frame = 1
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRL 612
            R+ GPRLKII R G+LPGLT K++  +  K   +++K K S YKIRLNEKQKLRYNYG+TESQLLRYVKEA+RRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQFV+HGHV+IN K+VNIPSFQC+PND+ISFS K KT+ LIK NL Q + LN N ++SNSHLEFD  LLTGKI+NL++R+DL F INDMLVIEYYSRL
Sbjct:    3 RYRGPRLKIINRLGDLPGLTRKVVIKQDSK---EQKKSKDSPYKIRLNEKQKLRYNYGITESQLLRYVKEAKRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVSHGHVMINKKRVNIPSFQCRPNDIISFSTKPKTVTLIKSNLNQGENLNANDNISNSHLEFDSKLLTGKILNLIQRKDLRFKINDMLVIEYYSRL 203          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: D1J700_ECTSI (30S ribosomal protein S4, chloroplastic n=8 Tax=Ectocarpales TaxID=2877 RepID=D1J700_ECTSI)

HSP 1 Score: 296 bits (757), Expect = 1.240e-99
Identity = 152/204 (74.51%), Postives = 174/204 (85.29%), Query Frame = 1
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRL 612
            R+ GPRLKII R G+LPGLT K++  ++     +++K KAS YKIRLNEKQKLRYNYG+TESQLLRYVKEARRRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQFV+HGHV+IN K+VNIPSFQCQPND+ISFS   KT+ LIK NL Q +  N N +VSNSHLEFD  LLTGKI+NL++R+DL F INDMLVIEYYSRL
Sbjct:    3 RYRGPRLKIINRLGDLPGLTRKVVIKQE---TPEQKKSKASPYKIRLNEKQKLRYNYGITESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVSHGHVMINKKRVNIPSFQCQPNDIISFSKNPKTVTLIKANLNQKENSNPNDNVSNSHLEFDSQLLTGKIVNLIQRKDLRFKINDMLVIEYYSRL 203          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A8F0F9Q9_9PHAE (Ribosomal protein S4 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9Q9_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 5.060e-98
Identity = 154/208 (74.04%), Postives = 171/208 (82.21%), Query Frame = 1
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEK---GKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 615
            R+ GPRLKIIKRFG+LPGLT K++  ++   GK  ND+   KASAYKIRLNEKQKLRYNYGVTE QLLRYVKEARRRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQ VNHGHVLIN K+VNIPSFQC+PND ISFS K KT+ LIK NL Q        ++S SHLEFD   LTG+I NL++R+DL F INDMLVIEYYSRLS
Sbjct:    3 RYRGPRLKIIKRFGDLPGLTRKVVLKKQNKYGKETNDQNLSKASAYKIRLNEKQKLRYNYGVTELQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQLVNHGHVLINKKRVNIPSFQCRPNDSISFSTKPKTITLIKSNLNQGDNSTSKDNISTSHLEFDPKSLTGEIKNLIQRKDLKFKINDMLVIEYYSRLS 210          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A2R4QQ10_9PHAE (30S ribosomal protein S4 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ10_9PHAE)

HSP 1 Score: 286 bits (733), Expect = 5.200e-96
Identity = 154/205 (75.12%), Postives = 171/205 (83.41%), Query Frame = 1
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 615
            R+ GPR+KIIK+ GELPGLT K I   K KN+N K++ KASAYKIRLNEKQKLRYNYG+TESQLL YVKEARRRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQ VNHGHVLINNKKVNIPSFQC+P D+ISFS+K KT +L+K+N  +   L     VS SHLEFD+  LT KI NLV R+DL F INDMLVIEYYSRLS
Sbjct:    3 RYRGPRIKIIKKLGELPGLTRKAI---KKKNVNQKKETKASAYKIRLNEKQKLRYNYGITESQLLSYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQIVNHGHVLINNKKVNIPSFQCRPKDIISFSSKSKTNNLLKINSSEPNHL--TDKVSTSHLEFDKQSLTAKINNLVNRKDLRFKINDMLVIEYYSRLS 202          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A141BSI8_9PHAE (30S ribosomal protein S4, chloroplastic n=15 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSI8_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 1.050e-87
Identity = 146/209 (69.86%), Postives = 165/209 (78.95%), Query Frame = 1
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKP---KASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLN-INPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 615
            R+ GPRLKIIK+ G+LPGLT KII                 K+SAYKIRLNEKQKLRYNYG+TESQLL YVKEARRRKGLTGF+LMQLLEMRLDNIIFRL L PTIPA RQFV+HGHVL+N KKVNIPSFQC+PND+ISFS+K K  +L+K NL Q   +N I  +VS SHL+FDQ  LT KI  LV ++DLSF INDMLVIEYYSRL+
Sbjct:    3 RYRGPRLKIIKKLGQLPGLTRKIIIKXXXXXXXXXXXXXXSKSSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLVPTIPAGRQFVSHGHVLVNKKKVNIPSFQCRPNDIISFSSKSKITNLLKTNLSQ---INYITDNVSTSHLKFDQQSLTAKINRLVTQKDLSFKINDMLVIEYYSRLA 208          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A2I4Q350_9PHAE (30S ribosomal protein S4, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q350_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 1.010e-83
Identity = 132/207 (63.77%), Postives = 161/207 (77.78%), Query Frame = 1
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLND---KQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRL 612
            R+ GP+ KI+ +FG L GLT K   +++ +  ND   ++K KASAYKIRLNEKQKLRY YGV ESQL+RYVKEA+RRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQ VNHGHV IN K+VNIPSFQC+P D ISF+N+ + LD++K NL Q + +    +  N HLEFD   L G++ +L++  +L F INDMLVIEYYSRL
Sbjct:    3 RYRGPKKKIVNKFGNLAGLTQKTKREQQNQKENDLGEQKKDKASAYKIRLNEKQKLRYYYGVNESQLIRYVKEAKRRKGLTGFVLMQLLEMRLDNIIFRLNLAPTIPAARQLVNHGHVYINKKQVNIPSFQCEPGDSISFNNRPEILDMLKSNLAQKQNIKSTNNSINDHLEFDSNTLLGQVNSLIEEHNLIFTINDMLVIEYYSRL 209          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7Q2_9PHAE7.410e-12792.20Ribosomal protein S4 n=1 Tax=Protohalopteris sp. T... [more]
A0A8F0JYE9_9PHAE3.040e-10676.44Ribosomal protein S4 n=2 Tax=Laminariales TaxID=28... [more]
A0A8F0FB40_9PHAE6.810e-10375.96Ribosomal protein S4 n=1 Tax=Desmarestia aculeata ... [more]
A0A0S0FBJ9_COSCS2.270e-10174.5230S ribosomal protein S4, chloroplastic n=28 Tax=L... [more]
A0A6B7EXY2_9PHAE8.710e-10074.0230S ribosomal protein S4 n=1 Tax=Cladosiphon okamu... [more]
D1J700_ECTSI1.240e-9974.5130S ribosomal protein S4, chloroplastic n=8 Tax=Ec... [more]
A0A8F0F9Q9_9PHAE5.060e-9874.04Ribosomal protein S4 n=1 Tax=Chorda asiatica TaxID... [more]
A0A2R4QQ10_9PHAE5.200e-9675.1230S ribosomal protein S4 n=3 Tax=Fucaceae TaxID=30... [more]
A0A141BSI8_9PHAE1.050e-8769.8630S ribosomal protein S4, chloroplastic n=15 Tax=S... [more]
A0A2I4Q350_9PHAE1.010e-8363.7730S ribosomal protein S4, chloroplastic n=1 Tax=Di... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2121contigH-paniculata_contig2121:21734..22351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.9
Seed ortholog evalue1.8e-78
Seed eggNOG ortholog2880.D1J700
Preferred namerps4
KEGG koko:K02986
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0016020,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112
EggNOG free text desc.positive regulation of translational fidelity
EggNOG OGsCOG0522@1,KOG3301@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size618
Cds size618
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929565.4436412-CDS-H-paniculata_contig2121:21733..223511622929565.4436412-CDS-H-paniculata_contig2121:21733..22351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2121 21734..22351 +
1691480916.5019052-CDS-H-paniculata_contig2121:21733..223511691480916.5019052-CDS-H-paniculata_contig2121:21733..22351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2121 21734..22351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2121.5561.1prot_H-paniculata_contig2121.5561.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2121 21734..22351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2121.5561.1

>prot_H-paniculata_contig2121.5561.1 ID=prot_H-paniculata_contig2121.5561.1|Name=mRNA_H-paniculata_contig2121.5561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp
RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKPKASAYKIRLNEK
QKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLA
PTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLN
LMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEY
YSRLS*
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mRNA from alignment at H-paniculata_contig2121:21734..22351+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2121.5561.1 ID=mRNA_H-paniculata_contig2121.5561.1|Name=mRNA_H-paniculata_contig2121.5561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=618bp|location=Sequence derived from alignment at H-paniculata_contig2121:21734..22351+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACATTCGGGTCCCCGTTTAAAAATTATTAAAAGGTTTGGCGAATTACC AGGTTTAACAACGAAAATAATAACTGATGAAAAAGGGAAAAATCTAAACG ATAAACAAAAACCAAAGGCATCAGCTTATAAAATTAGATTAAATGAAAAG CAAAAACTTCGTTATAATTATGGTGTAACTGAATCACAGTTACTAAGATA TGTAAAAGAAGCCAGACGAAGAAAAGGATTAACTGGATTTATATTAATGC AATTATTAGAAATGAGATTGGATAATATTATTTTTCGATTAAAGTTAGCT CCTACTATACCTGCTGCAAGACAATTTGTAAATCATGGTCATGTACTTAT AAATAATAAAAAAGTAAATATACCAAGTTTCCAATGTCAACCTAATGATT TAATAAGTTTTTCTAATAAGCAGAAAACGCTTGATTTAATAAAATTAAAC TTAATGCAAAACAAAGGTCTAAATATAAATCCAGATGTATCAAATAGTCA TTTAGAATTCGATCAAGCATTATTAACTGGAAAAATTATAAACCTAGTGA AGCGTGAAGATCTTAGCTTTAATATAAATGATATGTTAGTCATAGAATAC TACTCAAGACTGTCATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2121:21734..22351+

>mRNA_H-paniculata_contig2121.5561.1 ID=mRNA_H-paniculata_contig2121.5561.1|Name=mRNA_H-paniculata_contig2121.5561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig2121:21734..22351+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACATTCGGGTCCCCGTTTAAAAATTATTAAAAGGTTTGGCGAATTACC
AGGTTTAACAACGAAAATAATAACTGATGAAAAAGGGAAAAATCTAAACG
ATAAACAAAAACCAAAGGCATCAGCTTATAAAATTAGATTAAATGAAAAG
CAAAAACTTCGTTATAATTATGGTGTAACTGAATCACAGTTACTAAGATA
TGTAAAAGAAGCCAGACGAAGAAAAGGATTAACTGGATTTATATTAATGC
AATTATTAGAAATGAGATTGGATAATATTATTTTTCGATTAAAGTTAGCT
CCTACTATACCTGCTGCAAGACAATTTGTAAATCATGGTCATGTACTTAT
AAATAATAAAAAAGTAAATATACCAAGTTTCCAATGTCAACCTAATGATT
TAATAAGTTTTTCTAATAAGCAGAAAACGCTTGATTTAATAAAATTAAAC
TTAATGCAAAACAAAGGTCTAAATATAAATCCAGATGTATCAAATAGTCA
TTTAGAATTCGATCAAGCATTATTAACTGGAAAAATTATAAACCTAGTGA
AGCGTGAAGATCTTAGCTTTAATATAAATGATATGTTAGTCATAGAATAC
TACTCAAGACTGTCATAACGACATTCGGGTCCCCGTTTAAAAATTATTAA
AAGGTTTGGCGAATTACCAGGTTTAACAACGAAAATAATAACTGATGAAA
AAGGGAAAAATCTAAACGATAAACAAAAACCAAAGGCATCAGCTTATAAA
ATTAGATTAAATGAAAAGCAAAAACTTCGTTATAATTATGGTGTAACTGA
ATCACAGTTACTAAGATATGTAAAAGAAGCCAGACGAAGAAAAGGATTAA
CTGGATTTATATTAATGCAATTATTAGAAATGAGATTGGATAATATTATT
TTTCGATTAAAGTTAGCTCCTACTATACCTGCTGCAAGACAATTTGTAAA
TCATGGTCATGTACTTATAAATAATAAAAAAGTAAATATACCAAGTTTCC
AATGTCAACCTAATGATTTAATAAGTTTTTCTAATAAGCAGAAAACGCTT
GATTTAATAAAATTAAACTTAATGCAAAACAAAGGTCTAAATATAAATCC
AGATGTATCAAATAGTCATTTAGAATTCGATCAAGCATTATTAACTGGAA
AAATTATAAACCTAGTGAAGCGTGAAGATCTTAGCTTTAATATAAATGAT
ATGTTAGTCATAGAATACTACTCAAGACTGTCATAA
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