mRNA_H-paniculata_contig2121.5561.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A8F0F7Q2_9PHAE (Ribosomal protein S4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7Q2_9PHAE) HSP 1 Score: 365 bits (936), Expect = 7.410e-127 Identity = 189/205 (92.20%), Postives = 195/205 (95.12%), Query Frame = 1
Query: 1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 615
R+ GPRLKIIKRFGELPGLTTKI+ DEKGK NDKQK K SAYKIRLNEKQKLRYNYGVTESQLLRYVKEARR+KGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFV+HGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIK NL QNKGLNINP++SNSHLEFDQ LLTGKI NLVKREDLSFNINDMLVIEYYSRLS
Sbjct: 3 RYIGPRLKIIKRFGELPGLTTKILIDEKGKPPNDKQKTKVSAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRKKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVSHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKSNLRQNKGLNINPELSNSHLEFDQKLLTGKIKNLVKREDLSFNINDMLVIEYYSRLS 207
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A8F0JYE9_9PHAE (Ribosomal protein S4 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JYE9_9PHAE) HSP 1 Score: 313 bits (801), Expect = 3.040e-106 Identity = 159/208 (76.44%), Postives = 184/208 (88.46%), Query Frame = 1
Query: 1 RHSGPRLKIIKRFGELPGLTTKIITDEK---GKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 615
R+ GPRLKIIKRFG+LPGLT K++ ++ GK+ D++KPKASAYKIRLNEKQKLRYNYG+TESQLLRYVKEARRRKGLTGF+LMQLLEMRLDN+IFRL LAPTIPAARQFVNHGHV+IN K+VNIPSFQC+PNDLISFS K KT+ L+K NL + +G N N +VSNSHLEFD LLTGKI+NL++R+DL F INDMLVIEYYSRL+
Sbjct: 3 RYRGPRLKIIKRFGDLPGLTRKVVVKKQSSQGKDTADQKKPKASAYKIRLNEKQKLRYNYGITESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNVIFRLGLAPTIPAARQFVNHGHVIINKKRVNIPSFQCRPNDLISFSTKPKTIALLKSNLNEAEGSNSNDNVSNSHLEFDPKLLTGKILNLIQRKDLRFKINDMLVIEYYSRLA 210
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A8F0FB40_9PHAE (Ribosomal protein S4 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB40_9PHAE) HSP 1 Score: 304 bits (779), Expect = 6.810e-103 Identity = 158/208 (75.96%), Postives = 178/208 (85.58%), Query Frame = 1
Query: 1 RHSGPRLKIIKRFGELPGLTTKIITDEK---GKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 615
R+ GPRLKIIK+FGELPGLT K++ ++ GK++ND++K KAS+YKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQFVNHGHVLIN KKVNIPSFQC+PND+I+FS K KT+ L+K N N N D+SNSHLEFD L GKI NLVKR+DL F INDMLVIEYYSRL+
Sbjct: 3 RYRGPRLKIIKKFGELPGLTRKVVVKKQNSSGKDINDQKKSKASSYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINEKKVNIPSFQCRPNDVITFSTKPKTITLLKSNSNHEDNSNSNNDISNSHLEFDYNSLKGKIKNLVKRKDLRFKINDMLVIEYYSRLA 210
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A0S0FBJ9_COSCS (30S ribosomal protein S4, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A0S0FBJ9_COSCS) HSP 1 Score: 300 bits (769), Expect = 2.270e-101 Identity = 155/208 (74.52%), Postives = 177/208 (85.10%), Query Frame = 1
Query: 1 RHSGPRLKIIKRFGELPGLTTKIITDEKG---KNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 615
R+ GPRLKIIKRFG+LPGLT K++ ++G K +++ PKASAYKIRLNEKQKLRYNYG+TESQLLRYVKEARRRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQ VNHGHVL+N K+VNIPSFQC+PND ISFS K K + L+K NL Q + N ++ NSHLEFDQ LLTGKI+NLVKR+DL F INDMLVIEYYSRL+
Sbjct: 3 RYRGPRLKIIKRFGDLPGLTRKVVLKKQGTQGKEATEQKTPKASAYKIRLNEKQKLRYNYGITESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQIVNHGHVLVNKKRVNIPSFQCRPNDSISFSVKPKIMALLKSNLNQGENSTSNDNILNSHLEFDQKLLTGKILNLVKRKDLRFKINDMLVIEYYSRLA 210
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A6B7EXY2_9PHAE (30S ribosomal protein S4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EXY2_9PHAE) HSP 1 Score: 296 bits (758), Expect = 8.710e-100 Identity = 151/204 (74.02%), Postives = 175/204 (85.78%), Query Frame = 1
Query: 1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRL 612
R+ GPRLKII R G+LPGLT K++ + K +++K K S YKIRLNEKQKLRYNYG+TESQLLRYVKEA+RRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQFV+HGHV+IN K+VNIPSFQC+PND+ISFS K KT+ LIK NL Q + LN N ++SNSHLEFD LLTGKI+NL++R+DL F INDMLVIEYYSRL
Sbjct: 3 RYRGPRLKIINRLGDLPGLTRKVVIKQDSK---EQKKSKDSPYKIRLNEKQKLRYNYGITESQLLRYVKEAKRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVSHGHVMINKKRVNIPSFQCRPNDIISFSTKPKTVTLIKSNLNQGENLNANDNISNSHLEFDSKLLTGKILNLIQRKDLRFKINDMLVIEYYSRL 203
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: D1J700_ECTSI (30S ribosomal protein S4, chloroplastic n=8 Tax=Ectocarpales TaxID=2877 RepID=D1J700_ECTSI) HSP 1 Score: 296 bits (757), Expect = 1.240e-99 Identity = 152/204 (74.51%), Postives = 174/204 (85.29%), Query Frame = 1
Query: 1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRL 612
R+ GPRLKII R G+LPGLT K++ ++ +++K KAS YKIRLNEKQKLRYNYG+TESQLLRYVKEARRRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQFV+HGHV+IN K+VNIPSFQCQPND+ISFS KT+ LIK NL Q + N N +VSNSHLEFD LLTGKI+NL++R+DL F INDMLVIEYYSRL
Sbjct: 3 RYRGPRLKIINRLGDLPGLTRKVVIKQE---TPEQKKSKASPYKIRLNEKQKLRYNYGITESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVSHGHVMINKKRVNIPSFQCQPNDIISFSKNPKTVTLIKANLNQKENSNPNDNVSNSHLEFDSQLLTGKIVNLIQRKDLRFKINDMLVIEYYSRL 203
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A8F0F9Q9_9PHAE (Ribosomal protein S4 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9Q9_9PHAE) HSP 1 Score: 292 bits (747), Expect = 5.060e-98 Identity = 154/208 (74.04%), Postives = 171/208 (82.21%), Query Frame = 1
Query: 1 RHSGPRLKIIKRFGELPGLTTKIITDEK---GKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 615
R+ GPRLKIIKRFG+LPGLT K++ ++ GK ND+ KASAYKIRLNEKQKLRYNYGVTE QLLRYVKEARRRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQ VNHGHVLIN K+VNIPSFQC+PND ISFS K KT+ LIK NL Q ++S SHLEFD LTG+I NL++R+DL F INDMLVIEYYSRLS
Sbjct: 3 RYRGPRLKIIKRFGDLPGLTRKVVLKKQNKYGKETNDQNLSKASAYKIRLNEKQKLRYNYGVTELQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQLVNHGHVLINKKRVNIPSFQCRPNDSISFSTKPKTITLIKSNLNQGDNSTSKDNISTSHLEFDPKSLTGEIKNLIQRKDLKFKINDMLVIEYYSRLS 210
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A2R4QQ10_9PHAE (30S ribosomal protein S4 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ10_9PHAE) HSP 1 Score: 286 bits (733), Expect = 5.200e-96 Identity = 154/205 (75.12%), Postives = 171/205 (83.41%), Query Frame = 1
Query: 1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 615
R+ GPR+KIIK+ GELPGLT K I K KN+N K++ KASAYKIRLNEKQKLRYNYG+TESQLL YVKEARRRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQ VNHGHVLINNKKVNIPSFQC+P D+ISFS+K KT +L+K+N + L VS SHLEFD+ LT KI NLV R+DL F INDMLVIEYYSRLS
Sbjct: 3 RYRGPRIKIIKKLGELPGLTRKAI---KKKNVNQKKETKASAYKIRLNEKQKLRYNYGITESQLLSYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQIVNHGHVLINNKKVNIPSFQCRPKDIISFSSKSKTNNLLKINSSEPNHL--TDKVSTSHLEFDKQSLTAKINNLVNRKDLRFKINDMLVIEYYSRLS 202
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A141BSI8_9PHAE (30S ribosomal protein S4, chloroplastic n=15 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSI8_9PHAE) HSP 1 Score: 266 bits (679), Expect = 1.050e-87 Identity = 146/209 (69.86%), Postives = 165/209 (78.95%), Query Frame = 1
Query: 1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKP---KASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLN-INPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 615
R+ GPRLKIIK+ G+LPGLT KII K+SAYKIRLNEKQKLRYNYG+TESQLL YVKEARRRKGLTGF+LMQLLEMRLDNIIFRL L PTIPA RQFV+HGHVL+N KKVNIPSFQC+PND+ISFS+K K +L+K NL Q +N I +VS SHL+FDQ LT KI LV ++DLSF INDMLVIEYYSRL+
Sbjct: 3 RYRGPRLKIIKKLGQLPGLTRKIIIKXXXXXXXXXXXXXXSKSSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLVPTIPAGRQFVSHGHVLVNKKKVNIPSFQCRPNDIISFSSKSKITNLLKTNLSQ---INYITDNVSTSHLKFDQQSLTAKINRLVTQKDLSFKINDMLVIEYYSRLA 208
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A2I4Q350_9PHAE (30S ribosomal protein S4, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q350_9PHAE) HSP 1 Score: 256 bits (653), Expect = 1.010e-83 Identity = 132/207 (63.77%), Postives = 161/207 (77.78%), Query Frame = 1
Query: 1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLND---KQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRL 612
R+ GP+ KI+ +FG L GLT K +++ + ND ++K KASAYKIRLNEKQKLRY YGV ESQL+RYVKEA+RRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQ VNHGHV IN K+VNIPSFQC+P D ISF+N+ + LD++K NL Q + + + N HLEFD L G++ +L++ +L F INDMLVIEYYSRL
Sbjct: 3 RYRGPKKKIVNKFGNLAGLTQKTKREQQNQKENDLGEQKKDKASAYKIRLNEKQKLRYYYGVNESQLIRYVKEAKRRKGLTGFVLMQLLEMRLDNIIFRLNLAPTIPAARQLVNHGHVYINKKQVNIPSFQCEPGDSISFNNRPEILDMLKSNLAQKQNIKSTNNSINDHLEFDSNTLLGQVNSLIEEHNLIFTINDMLVIEYYSRL 209 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2121.5561.1 >prot_H-paniculata_contig2121.5561.1 ID=prot_H-paniculata_contig2121.5561.1|Name=mRNA_H-paniculata_contig2121.5561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKPKASAYKIRLNEKback to top mRNA from alignment at H-paniculata_contig2121:21734..22351+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2121.5561.1 ID=mRNA_H-paniculata_contig2121.5561.1|Name=mRNA_H-paniculata_contig2121.5561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=618bp|location=Sequence derived from alignment at H-paniculata_contig2121:21734..22351+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2121:21734..22351+ >mRNA_H-paniculata_contig2121.5561.1 ID=mRNA_H-paniculata_contig2121.5561.1|Name=mRNA_H-paniculata_contig2121.5561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig2121:21734..22351+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |