prot_H-paniculata_contig2114.5526.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2114.5526.1
Unique Nameprot_H-paniculata_contig2114.5526.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length344
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2114.5526.1 vs. uniprot
Match: D8LHG7_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHG7_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 8.000e-83
Identity = 180/364 (49.45%), Postives = 210/364 (57.69%), Query Frame = 0 
Query:    2 EYDNGEALTQATLRLMRQSGILAGVNALPRDIKNPPLETDTHLLLRLKTSSPRSKSGTVAGRRSVPAGHPNGNADQDYGARQGNVTGIRTSLGAISENDESL-VGGNTTDHCRDAGEPTIPKRRPA----------------PSPASHTTAGAQQAPDDAATKPTRGAG----DSVARAPNRGKKRSSGAFEVDLLRFRRVEEIRGCKLGPAGGESLAADLANGACPRLTALRLGWNMLGDRGMRALVKALSHGGGASAAGRTLQELDLRGNGITVGGSWVIGKALATGAFPALRDLCLGANALRDEGGRAVAHFLLSGEGSWPRXXXXXXXXXXXXXVGVEAVFKAVTAPGVCLAPDIERINI 344
            EYD GE +TQATLR+MR+SGI+AGVNA P +IK  PLETDT+LLLRLK                                    + GIR S G       +    G    H + AG  T     P                 P+  +  TAG   A      KP+RG G       A   NRGKKRSS AFEVDLLRFR VEE+RG KLG  GGESLA+DLA+GACPRL+ LRLGW +LGDRG  A+V+AL  GGGASAAGRTL+ LDLRGN +T  G  V+   LA G  PALR L LG+N+LRDEGG+AVAH LL+G G+W R              GVEAVFKAVTAPGV LAPD+E I++
Sbjct:  195 EYDRGEVITQATLRIMRRSGIVAGVNAPPAEIKEEPLETDTYLLLRLKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPL--GIGGIRQSSGTGGSKPPAFPAAGERNGHHQRAGRQTAVTEMPGKNSSRSVQPVQSVEATPNNGAGPTAGPVAA---EGRKPSRGGGIRGGGGRAGNHNRGKKRSSQAFEVDLLRFRGVEEMRGWKLGAPGGESLASDLASGACPRLSVLRLGWCLLGDRGACAIVRALCGGGGASAAGRTLRTLDLRGNAVTAVGLRVLAGPLAFGGLPALRALDLGSNSLRDEGGKAVAHRLLAGAGTWRRLTRLDLSGNGMGNGGVEAVFKAVTAPGVTLAPDVEFISL 553
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2114.5526.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHG7_ECTSI8.000e-8349.45Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 303..330
e-value: 8.7
score: 10.5
coord: 271..298
e-value: 1.6
score: 15.7
coord: 206..233
e-value: 0.53
score: 19.1
coord: 178..203
e-value: 170.0
score: 1.5
coord: 241..268
e-value: 0.12
score: 21.5
NoneNo IPR availablePANTHERPTHR24107FAMILY NOT NAMEDcoord: 179..330
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 184..329
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 305..324
e-value: 0.01
score: 15.8
coord: 206..227
e-value: 0.019
score: 15.0
coord: 242..256
e-value: 0.17
score: 12.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 174..330
e-value: 4.4E-25
score: 89.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2114contigH-paniculata_contig2114:472..1503 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2114.5526.1mRNA_H-paniculata_contig2114.5526.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2114 454..1503 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2114.5526.1 ID=prot_H-paniculata_contig2114.5526.1|Name=mRNA_H-paniculata_contig2114.5526.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=344bp
MEYDNGEALTQATLRLMRQSGILAGVNALPRDIKNPPLETDTHLLLRLKT
SSPRSKSGTVAGRRSVPAGHPNGNADQDYGARQGNVTGIRTSLGAISEND
ESLVGGNTTDHCRDAGEPTIPKRRPAPSPASHTTAGAQQAPDDAATKPTR
GAGDSVARAPNRGKKRSSGAFEVDLLRFRRVEEIRGCKLGPAGGESLAAD
LANGACPRLTALRLGWNMLGDRGMRALVKALSHGGGASAAGRTLQELDLR
GNGITVGGSWVIGKALATGAFPALRDLCLGANALRDEGGRAVAHFLLSGE
GSWPRLVRLNLSGNGMRDVGVEAVFKAVTAPGVCLAPDIERINI
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf