mRNA_H-paniculata_contig2114.5526.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2114.5526.1
Unique NamemRNA_H-paniculata_contig2114.5526.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2114.5526.1 vs. uniprot
Match: D8LHG7_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHG7_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 4.490e-84
Identity = 184/371 (49.60%), Postives = 214/371 (57.68%), Query Frame = 1 
Query:    1 AAAAYLMEYDNGEALTQATLRLMRQSGILAGVNALPRDIKNPPLETDTHLLLRLKTSSPRSKSGTVAGRRSVPAGHPNGNADQDYGARQGNVTGIRTSLGAISENDESL-VGGNTTDHCRDAGEPTIPKRRPA----------------PSPASHTTAGAQQAPDDAATKPTRGAG----DSVARAPNRGKKRSSGAFEVDLLRFRRVEEIRGCKLGPAGGESLAADLANGACPRLTALRLGWNMLGDRGMRALVKALSHGGGASAAGRTLQELDLRGNGITVGGSWVIGKALATGAFPALRDLCLGANALRDEGGRAVAHFLLSGEGSWPRXXXXXXXXXXXXXVGVEAVFKAVTAPGVCLAPDIERINI 1050
            AA  YL EYD GE +TQATLR+MR+SGI+AGVNA P +IK  PLETDT+LLLRLK                                    + GIR S G       +    G    H + AG  T     P                 P+  +  TAG   A      KP+RG G       A   NRGKKRSS AFEVDLLRFR VEE+RG KLG  GGESLA+DLA+GACPRL+ LRLGW +LGDRG  A+V+AL  GGGASAAGRTL+ LDLRGN +T  G  V+   LA G  PALR L LG+N+LRDEGG+AVAH LL+G G+W R              GVEAVFKAVTAPGV LAPD+E I++
Sbjct:  188 AADEYLAEYDRGEVITQATLRIMRRSGIVAGVNAPPAEIKEEPLETDTYLLLRLKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPL--GIGGIRQSSGTGGSKPPAFPAAGERNGHHQRAGRQTAVTEMPGKNSSRSVQPVQSVEATPNNGAGPTAGPVAA---EGRKPSRGGGIRGGGGRAGNHNRGKKRSSQAFEVDLLRFRGVEEMRGWKLGAPGGESLASDLASGACPRLSVLRLGWCLLGDRGACAIVRALCGGGGASAAGRTLRTLDLRGNAVTAVGLRVLAGPLAFGGLPALRALDLGSNSLRDEGGKAVAHRLLAGAGTWRRLTRLDLSGNGMGNGGVEAVFKAVTAPGVTLAPDVEFISL 553
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2114.5526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHG7_ECTSI4.490e-8449.60Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2114contigH-paniculata_contig2114:454..1503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score280.0
Seed ortholog evalue1.5e-72
Seed eggNOG ortholog2880.D8LHG7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Leucine Rich repeat
EggNOG OGs2CKB5@1,2RYCE@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-11_004140.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1050
Cds size1032
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.2525396-UTR-H-paniculata_contig2114:453..4711622929561.2525396-UTR-H-paniculata_contig2114:453..471Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2114 454..471 +
1691480914.5083702-UTR-H-paniculata_contig2114:453..4711691480914.5083702-UTR-H-paniculata_contig2114:453..471Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2114 454..471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.2653584-CDS-H-paniculata_contig2114:471..15031622929561.2653584-CDS-H-paniculata_contig2114:471..1503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2114 472..1503 +
1691480914.5243323-CDS-H-paniculata_contig2114:471..15031691480914.5243323-CDS-H-paniculata_contig2114:471..1503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2114 472..1503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2114.5526.1prot_H-paniculata_contig2114.5526.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2114 472..1503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2114.5526.1

>prot_H-paniculata_contig2114.5526.1 ID=prot_H-paniculata_contig2114.5526.1|Name=mRNA_H-paniculata_contig2114.5526.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=344bp
MEYDNGEALTQATLRLMRQSGILAGVNALPRDIKNPPLETDTHLLLRLKT
SSPRSKSGTVAGRRSVPAGHPNGNADQDYGARQGNVTGIRTSLGAISEND
ESLVGGNTTDHCRDAGEPTIPKRRPAPSPASHTTAGAQQAPDDAATKPTR
GAGDSVARAPNRGKKRSSGAFEVDLLRFRRVEEIRGCKLGPAGGESLAAD
LANGACPRLTALRLGWNMLGDRGMRALVKALSHGGGASAAGRTLQELDLR
GNGITVGGSWVIGKALATGAFPALRDLCLGANALRDEGGRAVAHFLLSGE
GSWPRLVRLNLSGNGMRDVGVEAVFKAVTAPGVCLAPDIERINI
back to top

mRNA from alignment at H-paniculata_contig2114:454..1503+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2114.5526.1 ID=mRNA_H-paniculata_contig2114.5526.1|Name=mRNA_H-paniculata_contig2114.5526.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1050bp|location=Sequence derived from alignment at H-paniculata_contig2114:454..1503+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGCAGCTGCGTATTTGATGGAGTATGACAACGGAGAGGCATTGACACA
GGCAACCCTCAGGCTGATGCGTCAGTCGGGCATACTCGCAGGGGTCAACG
CACTCCCCAGGGACATTAAAAACCCGCCGCTCGAAACCGACACGCACCTA
CTCTTAAGGCTCAAGACGAGTTCACCTCGCAGTAAGAGCGGGACAGTAGC
TGGACGACGATCGGTGCCCGCTGGACACCCCAACGGCAATGCCGACCAAG
ACTATGGGGCTCGGCAGGGCAACGTCACAGGAATCCGCACCAGTCTGGGA
GCCATCTCTGAGAATGACGAGAGCCTAGTCGGCGGGAACACCACAGACCA
TTGTCGCGACGCGGGAGAACCAACAATACCAAAAAGACGGCCCGCTCCTT
CACCCGCATCACACACCACTGCTGGAGCACAGCAAGCTCCCGACGACGCG
GCGACGAAGCCCACCCGAGGCGCAGGAGACAGTGTCGCGAGAGCGCCTAA
CCGAGGCAAGAAGCGTAGCTCAGGAGCGTTCGAGGTAGATCTGTTACGGT
TCCGACGCGTGGAGGAAATCCGAGGTTGTAAGTTGGGCCCTGCGGGTGGG
GAATCTCTGGCCGCCGATCTCGCGAACGGTGCGTGTCCGCGCCTCACCGC
CCTGCGGCTGGGGTGGAACATGCTGGGTGACCGGGGCATGAGGGCTCTGG
TTAAGGCGCTAAGCCATGGCGGCGGCGCATCGGCGGCAGGTCGCACACTT
CAAGAGTTAGACTTGCGGGGAAACGGCATCACCGTGGGCGGAAGCTGGGT
TATTGGTAAGGCTCTCGCCACCGGCGCATTTCCGGCGCTTCGGGACCTCT
GCCTCGGCGCTAACGCGCTTCGAGACGAGGGCGGTAGAGCGGTAGCGCAC
TTTTTGTTATCAGGGGAGGGGAGTTGGCCAAGGCTTGTGAGACTGAATTT
GTCCGGGAACGGAATGCGGGATGTTGGGGTGGAGGCAGTGTTTAAGGCGG
TGACGGCACCCGGAGTTTGCTTGGCACCAGACATAGAGAGGATAAACATT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2114:454..1503+

>mRNA_H-paniculata_contig2114.5526.1 ID=mRNA_H-paniculata_contig2114.5526.1|Name=mRNA_H-paniculata_contig2114.5526.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2064bp|location=Sequence derived from alignment at H-paniculata_contig2114:454..1503+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTATGACAACGGAGAGGCATTGACACAGGCAACCCTCAGGCTGAT
GCGTCAGTCGGGCATACTCGCAGGGGTCAACGCACTCCCCAGGGACATTA
AAAACCCGCCGCTCGAAACCGACACGCACCTACTCTTAAGGCTCAAGACG
AGTTCACCTCGCAGTAAGAGCGGGACAGTAGCTGGACGACGATCGGTGCC
CGCTGGACACCCCAACGGCAATGCCGACCAAGACTATGGGGCTCGGCAGG
GCAACGTCACAGGAATCCGCACCAGTCTGGGAGCCATCTCTGAGAATGAC
GAGAGCCTAGTCGGCGGGAACACCACAGACCATTGTCGCGACGCGGGAGA
ACCAACAATACCAAAAAGACGGCCCGCTCCTTCACCCGCATCACACACCA
CTGCTGGAGCACAGCAAGCTCCCGACGACGCGGCGACGAAGCCCACCCGA
GGCGCAGGAGACAGTGTCGCGAGAGCGCCTAACCGAGGCAAGAAGCGTAG
CTCAGGAGCGTTCGAGGTAGATCTGTTACGGTTCCGACGCGTGGAGGAAA
TCCGAGGTTGTAAGTTGGGCCCTGCGGGTGGGGAATCTCTGGCCGCCGAT
CTCGCGAACGGTGCGTGTCCGCGCCTCACCGCCCTGCGGCTGGGGTGGAA
CATGCTGGGTGACCGGGGCATGAGGGCTCTGGTTAAGGCGCTAAGCCATG
GCGGCGGCGCATCGGCGGCAGGTCGCACACTTCAAGAGTTAGACTTGCGG
GGAAACGGCATCACCGTGGGCGGAAGCTGGGTTATTGGTAAGGCTCTCGC
CACCGGCGCATTTCCGGCGCTTCGGGACCTCTGCCTCGGCGCTAACGCGC
TTCGAGACGAGGGCGGTAGAGCGGTAGCGCACTTTTTGTTATCAGGGGAG
GGGAGTTGGCCAAGGCTTGTGAGACTGAATTTGTCCGGGAACGGAATGCG
GGATGTTGGGGTGGAGGCAGTGTTTAAGGCGGTGACGGCACCCGGAGTTT
GCTTGGCACCAGACATAGAGAGGATAAACATTATGGAGTATGACAACGGA
GAGGCATTGACACAGGCAACCCTCAGGCTGATGCGTCAGTCGGGCATACT
CGCAGGGGTCAACGCACTCCCCAGGGACATTAAAAACCCGCCGCTCGAAA
CCGACACGCACCTACTCTTAAGGCTCAAGACGAGTTCACCTCGCAGTAAG
AGCGGGACAGTAGCTGGACGACGATCGGTGCCCGCTGGACACCCCAACGG
CAATGCCGACCAAGACTATGGGGCTCGGCAGGGCAACGTCACAGGAATCC
GCACCAGTCTGGGAGCCATCTCTGAGAATGACGAGAGCCTAGTCGGCGGG
AACACCACAGACCATTGTCGCGACGCGGGAGAACCAACAATACCAAAAAG
ACGGCCCGCTCCTTCACCCGCATCACACACCACTGCTGGAGCACAGCAAG
CTCCCGACGACGCGGCGACGAAGCCCACCCGAGGCGCAGGAGACAGTGTC
GCGAGAGCGCCTAACCGAGGCAAGAAGCGTAGCTCAGGAGCGTTCGAGGT
AGATCTGTTACGGTTCCGACGCGTGGAGGAAATCCGAGGTTGTAAGTTGG
GCCCTGCGGGTGGGGAATCTCTGGCCGCCGATCTCGCGAACGGTGCGTGT
CCGCGCCTCACCGCCCTGCGGCTGGGGTGGAACATGCTGGGTGACCGGGG
CATGAGGGCTCTGGTTAAGGCGCTAAGCCATGGCGGCGGCGCATCGGCGG
CAGGTCGCACACTTCAAGAGTTAGACTTGCGGGGAAACGGCATCACCGTG
GGCGGAAGCTGGGTTATTGGTAAGGCTCTCGCCACCGGCGCATTTCCGGC
GCTTCGGGACCTCTGCCTCGGCGCTAACGCGCTTCGAGACGAGGGCGGTA
GAGCGGTAGCGCACTTTTTGTTATCAGGGGAGGGGAGTTGGCCAAGGCTT
GTGAGACTGAATTTGTCCGGGAACGGAATGCGGGATGTTGGGGTGGAGGC
AGTGTTTAAGGCGGTGACGGCACCCGGAGTTTGCTTGGCACCAGACATAG
AGAGGATAAACATT
back to top