prot_H-paniculata_contig2113.5523.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2113.5523.1
Unique Nameprot_H-paniculata_contig2113.5523.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length118
Homology
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BLAST of mRNA_H-paniculata_contig2113.5523.1 vs. uniprot
Match: A0A2H4ECA4_9PHAE (SAMSARA n=1 Tax=Ectocarpus sp. JMC-2016a TaxID=1813763 RepID=A0A2H4ECA4_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.640e-20
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0 
Query:    2 LAAATKLTTLQISNWFTNKRKRHWTPVIKKRTRSPRDFFEFCVMNPKE 49
            LA  T LTTLQISNWFTNKRKRHWTPVIKKRTRSPRDFFEFCVMNPK+
Sbjct:  252 LAEKTNLTTLQISNWFTNKRKRHWTPVIKKRTRSPRDFFEFCVMNPKD 299
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BLAST of mRNA_H-paniculata_contig2113.5523.1 vs. uniprot
Match: D7FSW8_ECTSI (Homeobox domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSW8_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.230e-15
Identity = 41/58 (70.69%), Postives = 44/58 (75.86%), Query Frame = 0 
Query:    2 LAAATKLTTLQISNWFTNKRKRHWTPVIKKRTRSPRDFFEFCVMNPKEALIPMRSTSQ 59
            LA  T LTTLQISNWFTNKRKRHWTPVIKKRTRSPRDFFE    +P E  +P+    Q
Sbjct:  134 LAEKTNLTTLQISNWFTNKRKRHWTPVIKKRTRSPRDFFED--PSPVEKKLPLPQEQQ 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2113.5523.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2H4ECA4_9PHAE1.640e-2091.67SAMSARA n=1 Tax=Ectocarpus sp. JMC-2016a TaxID=181... [more]
D7FSW8_ECTSI1.230e-1570.69Homeobox domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 1..38
e-value: 5.7E-10
score: 40.5
IPR008422Homeobox KN domainPFAMPF05920Homeobox_KNcoord: 1..23
e-value: 6.1E-6
score: 26.0
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 1..27
score: 9.07
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 1..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2113contigH-paniculata_contig2113:10207..18471 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2113.5523.1mRNA_H-paniculata_contig2113.5523.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2113 10202..18471 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2113.5523.1 ID=prot_H-paniculata_contig2113.5523.1|Name=mRNA_H-paniculata_contig2113.5523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MLAAATKLTTLQISNWFTNKRKRHWTPVIKKRTRSPRDFFEFCVMNPKEA
LIPMRSTSQLQRQQQQNHHTMQHLHHHHHLHRGAPHPHTMTGIHPQGAND
MRLSLSPSSESRNPYGAH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008422Homeobox_KN_domain
IPR001356Homeobox_dom
IPR009057Homeobox-like_sf