mRNA_H-paniculata_contig2113.5523.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2113.5523.1
Unique NamemRNA_H-paniculata_contig2113.5523.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2113.5523.1 vs. uniprot
Match: A0A2H4ECA4_9PHAE (SAMSARA n=1 Tax=Ectocarpus sp. JMC-2016a TaxID=1813763 RepID=A0A2H4ECA4_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.710e-20
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 3 
Query:    9 LAAATKLTTLQISNWFTNKRKRHWTPVIKKRTRSPRDFFEFCVMNPKE 152
            LA  T LTTLQISNWFTNKRKRHWTPVIKKRTRSPRDFFEFCVMNPK+
Sbjct:  252 LAEKTNLTTLQISNWFTNKRKRHWTPVIKKRTRSPRDFFEFCVMNPKD 299
[Close]
BLAST of mRNA_H-paniculata_contig2113.5523.1 vs. uniprot
Match: D7FSW8_ECTSI (Homeobox domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSW8_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.270e-15
Identity = 41/58 (70.69%), Postives = 44/58 (75.86%), Query Frame = 3 
Query:    9 LAAATKLTTLQISNWFTNKRKRHWTPVIKKRTRSPRDFFEFCVMNPKEALIPMRSTSQ 182
            LA  T LTTLQISNWFTNKRKRHWTPVIKKRTRSPRDFFE    +P E  +P+    Q
Sbjct:  134 LAEKTNLTTLQISNWFTNKRKRHWTPVIKKRTRSPRDFFED--PSPVEKKLPLPQEQQ 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2113.5523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2H4ECA4_9PHAE1.710e-2091.67SAMSARA n=1 Tax=Ectocarpus sp. JMC-2016a TaxID=181... [more]
D7FSW8_ECTSI1.270e-1570.69Homeobox domain-containing protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2113contigH-paniculata_contig2113:10202..18471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue3.4e-13
Seed eggNOG ortholog2880.D7FSW8
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.DNA binding
EggNOG OGsKOG0773@1,KOG0773@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size359
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2113.5523.1prot_H-paniculata_contig2113.5523.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2113 10207..18471 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929560.8505936-UTR-H-paniculata_contig2113:10201..102061622929560.8505936-UTR-H-paniculata_contig2113:10201..10206Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2113 10202..10206 +
1691480914.3314183-UTR-H-paniculata_contig2113:10201..102061691480914.3314183-UTR-H-paniculata_contig2113:10201..10206Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2113 10202..10206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929560.8636897-CDS-H-paniculata_contig2113:10206..102441622929560.8636897-CDS-H-paniculata_contig2113:10206..10244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2113 10207..10244 +
1691480914.3503144-CDS-H-paniculata_contig2113:10206..102441691480914.3503144-CDS-H-paniculata_contig2113:10206..10244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2113 10207..10244 +
1622929560.880157-CDS-H-paniculata_contig2113:14008..140931622929560.880157-CDS-H-paniculata_contig2113:14008..14093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2113 14009..14093 +
1691480914.3589017-CDS-H-paniculata_contig2113:14008..140931691480914.3589017-CDS-H-paniculata_contig2113:14008..14093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2113 14009..14093 +
1622929560.8950589-CDS-H-paniculata_contig2113:18240..184711622929560.8950589-CDS-H-paniculata_contig2113:18240..18471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2113 18241..18471 +
1691480914.3683329-CDS-H-paniculata_contig2113:18240..184711691480914.3683329-CDS-H-paniculata_contig2113:18240..18471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2113 18241..18471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2113.5523.1

>prot_H-paniculata_contig2113.5523.1 ID=prot_H-paniculata_contig2113.5523.1|Name=mRNA_H-paniculata_contig2113.5523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MLAAATKLTTLQISNWFTNKRKRHWTPVIKKRTRSPRDFFEFCVMNPKEA
LIPMRSTSQLQRQQQQNHHTMQHLHHHHHLHRGAPHPHTMTGIHPQGAND
MRLSLSPSSESRNPYGAH
back to top

mRNA from alignment at H-paniculata_contig2113:10202..18471+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2113.5523.1 ID=mRNA_H-paniculata_contig2113.5523.1|Name=mRNA_H-paniculata_contig2113.5523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8270bp|location=Sequence derived from alignment at H-paniculata_contig2113:10202..18471+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGATATGCTCGCGGCGGCGACTAAGCTGACGACCCTGCAAATGTGAGTC
CCAACCTTGCCCCAACCCATTTACCTCACCCCTCACCGAACTGAGTTTTG
TGCCATAAGGACCGATGTTCCGAAATGTTCATTTCTGTGTCCTGTTAGGT
GCGATGGAAGAACACAAGTGTTTATTCATTGATGGTCGGTAAATTTTGAG
TATCTTTCCGCTGGAATTCGCTTTGTAATGAACAAAGTCTGAGAGGGGTT
AGGCGTCCAGCATTTCAATGCACTGGTCGCTGTACAAAACGGTGTCTCGC
ATGTTAGTTGTGCTTTCTAGTGGCCCGTTCGAATAATTAGCCGACAAGCT
CCCAATGATAGCCGAAGATTGGGTCATGTCCTGTGACAAGATAACTCCGT
TTTTTTCACTCAGAACTTTCATCGACTCAACGACAGCTCTACCGTTTTGC
AGTGTTTTTTCCTTCTCTTGAATATTCCTTCTGACTGATCCATCTCTTGA
GGTCACAGAAGCAAACGAAATTGAGCGGGAAGACCTGCTGTCTTGAAAAG
TTGTATATATCGCTTTGGAGTGTGGTTCACATTGGAGAGGGGATGGGGTG
CAACCGATGTCAAGGCAAGGTAGCAAGTACGGCAATTAGTGATGGCGATC
GCCTCGCTTTAGTCGCCAAGGTAACATACAGCACAACTACCAATTCCGAT
ATTGAGAGTGTATGCAGGGGTGTCTTCAAAAACACATGTCAAGATTGCCA
CAACCAGCTCGTTGTATGTACAGTCAGTATCGCCCTTCTTCGTTCACGGT
GCTACGATAGAGCTCCACTGTAGTACAGTTCTGCACGTATACCGGCTGTG
GGTTCCCATGATTTGAAAATTTTATTTACTTTCCCCTCAGTCAGAATTTT
GGCACAGGTTTTGGCTGGGAAAGCGTGAACCGAAGGGAAAGCCCAAAATC
ACCTCGCTGTACCTCGAATTATGATGCTGACAGGACCACAGGACAAAAAT
TGTTTCTTCCAGTCAATGTTGCATCGAAATGCAGTCTGAATGTTGAACTG
TTATTTCCATACCAAATGTCCTTCGTGAACACTGTTGAACACAGTATGGG
TTCTTGTACTCAGTCATGCGACACAAAAGTAGCAGTCTCGGCTCCACAAG
TTCGGTGTTGCGCCTGCCTGCCTGTCAAAATCGACGAGGTTTTGCATCAG
ACCAGTAAGCGGATCACGAGCAACCTTACGTTTGTCCTCTGATGCAGCAC
ATAACATAACCTTCACATGTGCATAACCGTTTCGCTGAAAGTATGCGAGG
GTCTTCGTGTCGTGTCTCAACAAGAGAAAACGACATGAATAAGTTTAACG
GGAAAACATCAAAACAGTAGAGCAACTTAATGGTTGATCGACACGTTCAT
GGCCGAAAGTGAGACCCTGTTGATACCCCCATTTTCCCACAATAGTGAGA
ACTTGGTTGACGAAAAAGTGAAAGTGCAAAGTAACTAAACGAAACTAGCG
ACCAAAGGCTGGGAGTTAAAATTTCAAGACGTTTTTGGAATAGAGATACA
CACCCCTTCGCTGATCGAGGTAGCGCGCACGACCCCGTGCAGAACACCGC
GTAAGTCGGGCCGTAACTTCAGAATCGCTAAAGGCTGTGTCTTAACTCCC
AAAATCAGATGTGAGCAAGATCGAGTCGAGAATATTTGTACACGGTTTTT
GATGGATACAATGCCCGTGGTAAACAATGTCCCCTTCTTTTGTTGGAAAA
GTATGTCTAAATCTACAGGTTTGACCTCATATTAGGCCATCTCCTATGCT
GTCAACAAAACGAACGTTTTTCTTTACACGAAGTTTTTTATCGGGGAGGA
TTGACAGCTCTCCGAGTAAAAAAATGGAACTTCAACGAGACACACAGGCG
TGTTCTCCTGGATGATGTTTCATAGCCCACAGTAAAACACCCGCGCTGGT
CACAAATGCCAGTACTAAGCACATACACAATCCAAGGTGTGAGCCCCGCC
GCTCTATGGAAGATCTGTAGGAATGGCAATCGTTTATATCGGCGGTGCTC
GCTGCTGTAGTAGCCGTCAATAGTATAGACGAAGACGACAGACGCAGTCG
ATTCATTTCCCGCAAGAACGGACTGTGAGTTGCCCACCCACGGAGATCAA
GCTGGGGGGTTTCCTTCACCCAGCGGAAACAGCTGTTAGCGGCGAAATCC
TATTTTTTATAGCTTCTTGTGCCTCTCGCTCAGGGGCAGGGTCCCACCGT
TCTTCTCAATAGACGTACAAGCATACCACTATGGTACATCTGTCGAATGA
TAAACTGTGTCTTCTACACACCCGGACTGAACCCTTGAACCCTCATTTCC
TTCCACACCCGTTCCACGCAAGGGTTTGTCTTGATAAACATTGCGGTGGA
TGGTGCATTCATGGTGATCCGCTTTCACAGGATAAGGGTGTGCTGGACGA
GAACCCGTATGTTCGAAATTCTCTCAACTTAATTGCGCCGCTAGCAAAAC
GCCATCAAACATTGAACTGAGGACATTTTATGTTTCTGACTCAGGCCCGA
CCCCATAAGATGTGAGCTATGAACTCTTCCCAGTCATTCTGTTTTAGTAA
AAAACAATGAGATTTTATGATTCTGACTGAAAGTTTTTCTGACAACATAG
GAGATGGCCTTACCGAAAAAGCGAGTTGCGCTGCGTCTCCAGATACTTAA
TTTGCTCTGAGCATAGCCGTTACAATTTCTTCAGTTACCACGTTCCAAAA
TGGAAAAGACTTGGGAAATCCTTGAAAAACACGCTCAGAGAGACTGAGTA
CACGCGCAATGGCTCGACTGATAGACCTTGCTCAGCTGCACACGTCAGCC
AGTGTTTGGCGTGAATCCGTCCTGTGTTTGAAGAGCTACAGCATCTAGCA
TTTCACGTCCAGAAGATGTTCGTTTCCTCGGAAACGAAAACTTCGCTCCG
CCGTTCCTCGATAAGATATGCCCGTACAAAAAATACGACTCCGCGCAGCT
AAAGAGGTGATTTCGCGCGAAGATGGTCAGACAGTGGTGAGCACGGCATT
GAGTATACGGACATGAGTTAGCTTGGGCATGTGGTGGTTGTGTCTCGCTA
TTGTGCACATTTTTAGTGTGTCACCTGTCGAACTGGAACGTGAAATGCGG
GCGCGACGAGTGGCGATTCACTTGTTCCAACTCTATTTTGTTTTAGGGTT
CAGGGGATGAGCCTCTGTGTACGTTCAACTCTGAACGGGTTCACCCCGAA
CGATTGCTTTTTTTCAAAATTGAAGAAGCGCAATTTACGTCATTTAAAGA
TTGATGTAATATTTTGCTACGGTAAGATCTGGAATTTTCCTTAAAAGCCA
AAAAAAATCTTACTAGTTGAGCCTTTTGCAACCGTGATTTTTTTTTTTTA
AGTCCGTTCGAAAAGAATTCGCGGAGTTCAACCCTCACGCGGACCATATT
TTTTTCACTTGGAAATGATGTGCTCAAAATCTCTACAGTAGGGGTGGTGG
CGGTAGGGCTGTTGTTTCGCACGAGGAGGTAATCACGCATCGTGTGTAAT
GGGTTCTTTCGCACCATCGGAGCATAGTATTAGTCCTCCCCGTCACTAAA
CCAATAACGTACATGGAACGTTTAAACCTTCTTCCGTTTGTTTTTTCACC
GACCGAATTATATTTGCTTGCGGAAAAGATGCCTAGTAGCGAAGTTGGCT
CTCGCGAGCCATTTTTTTGTTCTCGAAATACGACACGCATACACACATCC
GCGGCCGCTTTCGACTGTGCGTCCTTGGTACTCGTTTCGTTCGTTTCTCT
GTGACAGCTCAAACTGGTTCACAAACAAGAGGAAGAGGCACTGGACCCCT
GTCATTAAAAAGCGAACCAGATCTCCGAGGGACTTCTTTGAGGTACGCTG
CAGCGGGTTTTCCGATTCGACGACCTATTCGAACATGGGACCAAAGGCAC
AATGGGTGGGGCAGCTCGTTGACTGCGAAGATCTAAGAGGAATATGTAGG
GTTTGAGTTGGTGAATGTCTCATTTCTCACTCGGTGTTCATACCCCCTGT
GCGCATGCCCTGTGCGCATGAAAGCACTCATCCGAGGTTTGTTATCCCCT
ACTACGCTGATGTCAACGGAGATGCGGCGGGTGGCATTCAAAATATAAGG
GTTGGGTAGATTTTAATAAACGAACAGGACAGAGGGTATTTTGGAGGTGC
ATCTCAAATATATCGATCCTGAAGACCCCTCTGGCATGTAGAGGTTGTGC
TGTCTAAGAAAAGCACGTGAATGTGGCACTATCTGACACAATTCGGGTTT
CAACAATTACAAAACAGTTTCCGTGTCATGGAAGAAAAAAAAAAAAACAC
TCCTCAGCAGTGAAAGTCACTGCCGCCATCACAGCAAGATCACAAGCACG
AGCTATGACCTATGAGCATATCTTTAAGCTGCGATTACTGCTCTTCCTTG
CGGGCGCTCAATGGCTTGGAACGTCCTCGTCGTCCCAGCGAACCAGCCTG
GTGTGCTGAGCCGAGGACATCGCAACGCATTGAGGCGCCCGTCGTCATGA
GCAAGACTATCGCGACTTGGCGGTGTACAGCTGAGCTTCTGCTGCGTGGC
GTCAATAGCTTGACGACTTGAGGGGTGCTTTTGTTTATATCCCTCGTGAC
AACACGCCTCTTGGGTAAAACGCGTGGTCCAGTATTATGTTGTACTGTAC
GTACATTGGTTTATGCATTCTGAATTTGTGAACAACTTTGAATTGCAGCG
CTCAAGTCCAAGGTGCGCCACTGCTGTCTGTGTTCATTGACTACAAGATG
CTATACACGACAAACAACGGAATTTTTTGTTTCTGTGGGATAACTCTCAA
CACGTCCCTGGGGCTTGGGTGTGTGGCAACCTTGTCGAGTTTTTTTTTCA
ATTTTGGCAGAGCCAAGAAGCACACCAATATATACATGGCTCACGAGCAC
CCGCAATATTGATTCCCAAAGACACGATGTTCGTGTGGGCCCGGATACTC
CTCTGTGTTGGAATACGCTAAAAACGTATTAAAACAAAAATTCGTTCAAC
ACGTGTCTGAAAATAGCTATACCTGTAGCACTCACCCTGGAGAGAACGAA
TTAATGACCAGGATGCAACTCGAAGATACATGATTACTAGTATCTGAAGA
GAAATCACGCTGGTGTGTGTGTGCCCTGACTTTCCTGAAGGCTAGCAGGC
CACCTCTGCGCCCTCAGCATTGACGGCAATGCAGATGAAGCTGTTGCCTC
GCCCTCCGTGTTTGTTTATCGGCGTCTTATCACAAGTAAATGTTGTGAGG
ACATGGTCAAGTTTCAATCTGTTCTGAAGTCCAGGGTCTGGGCTCTTGCT
TGCTTTCTTTCTGATACTATGGCCGCATGGCTCTCGGCAAGTCCAGTGAG
CACTACGTTTTGTGCTATCTCTTTCATGAATTGTAGGCTCGTCGGTCGTA
GCTATTTCACGCGTCTCGTACGGGAGTCTCCATCAGGGTGCACGCTGCAG
ATGTCAATTTGCGCGTGAGGTCTTTGCGCCAATGCGTGGAGCCGTCTTTG
TTTCTGACGAAAAATGCCGTCAAAAACTTGACTCATTTTTCACGTTGCTC
TGGTTTAGCTTGAAGACACTTCACAAGACTTCGTGCTGCTCTCGTGATTG
TCGCCGGCACAATATGTTGAACAGATCTCCATTTGCTTGGTTCCAACCTT
ATATGTTGTACATTTTGATTGGCGGGGTTGAGTTGCACCGCTAAAACTGC
TTCCCGTGGTACGCGGTCATTGTTTTTTACCGGGCGCTTGCGGTGGTCTT
CTGCTGATTGAGTCTCGAAACAGTCGAGACGTTTCTGCATCTGCCACATT
GACCCTAGGCTCGTCCTCGATTATTTACCTCCTTGACCATTGCCTTGGTT
ACTGTTTCATAAGCTTGTTCGCGACCAGCTTTTTGCCGTGTCTCATAGCA
TGCGTCTTTCAGTTGTAGGCTGGTTTCGGACAATCAATCTTTATGTTGAA
CAGTTATTGCGTACAAGGTAGAGGCTACAGTTCACCCTACTAGTCGTTAC
CCTTACCTTTGCTGATTCAGCTTGGAGTCCAATTATCAGCTTTTCTTTCC
ACCACGTGGGAACCTGACTCTCGGGTGAATGGCTGGATTTTTCTCGTTGG
TCGAGCCCAAGATGCGCGTCGTGTCTTGGAGCTCGACTTCTCTGATGTTT
ACTCGACTTCCTCTATGTGAACCCCACAGTCAGCAGAAATTCTATTGAAT
TATACTGGCTGTGGACTTTCCAGTCCAGCAGTCAAAGCCTCGGAGTTAGA
CCGCGGGTCTGCATGATCAGAAGATGTTCTGAAAAGTAAAAACAAACACA
AATATTCCTGAATTTGAACAAATCAAAGTGTATGGATCGAGTCAGATCAC
AATACGCATGGAAGTACAGGAGCATGCCCAGTGTTGCGCCTGTGCTTTTT
TTTCAACAACACCCTCAAATAATTTACTCGAAAAGCGCTTTTTTTTCAAC
AATGCCCTCAAATAATTTGCTCGAAAAGCGTGTGTGGGAAAGGAAAGAAC
CGCGTAGTTGCAAATACACCGCGATGGAGAACACATATAGCGACGTCTTA
CAAGAACTCTGGGTCAATTCCATCTGTATCAGCGCACAAACGGGTCTACG
ACTCGGGTAACAAACAGGCGATACTCCGGATTGGGGATTAACTTTCTTGT
TGGGATTGAAGTTCCGTTGAATTTGAATGGAATACTTCGAAAATGGTACC
AGCGAAGGGCACTCTCCGTGGAGATTCCGTGTCCATCTCACTGCTTTTTA
CTCTGCACAATGAACTTGGACATCTTTTCACACCTCGATTCGCACGGAAA
ATGCCTTCCGCTAGCACCATGTTTTCGAAGTATTCTATTCAAATTTAACG
GAACTTCAATCCCAACAAGAAAGTTAATCCCCAATCCCGAGTATCGCCTG
TTCTCTTGTGATTCGGGTAACAAATGAAAAATATGCGTTGATTGTACAAA
TGCCGGGAAGTTATTTCTAGCCTCTGGTCCAGTCCAGAAACCGTAATCGC
TGGAATACAACGCAAGGAACCGCGTAGCAAATCCATCATGTGATGCTCGC
TGTGGCCTTCACTCAGTTATCCGTGCCACTGACCTAGGCCGCCCCATCAT
AGCGGTCCTTGAGGAGGTCATGTATTTAGTTTTGTCGCTCGAATCGATCC
TGTCCTAAATCTGAAATGGTAGCACCCTGTTTATGCATATGCATAATTGC
TGCAGCTGTAACATGTTGTAATGGTGCAGATGGAATCTGTCAAAGCACAC
ACTCGAACTGGCTGGTGATTGTTGCGCTCTTCTGTAATAGCAAGCTGTCA
ATCAACGCCTTCGATTTCAGAAAAAAGACCCTGACTGGATGTGTACTGGA
AAGTGAGAATTTCCGTCGCGATTGCGGACACAAGCACCAAAAAGAAAATG
GGATGGCTAGTCGCGTGTGATCAGTACGTGTCCAAAGAAAAGGAAATCCG
CTACTCGAATCGCAACCGACTGAGGCTGACAAATGATCGGCAAGGTGGCA
TAGGGTGCCCCAGTGGCCATGTGCGTGTGTAGCGTAATCGCTATTCTCCA
GTCTGCCAATGAGCGAGCCAATATGTCCGGCACATTCACCTTGCTTTTCT
CACCATGCCATCCGTACAATCGCATAGTTCGAGGGCGACAAAGTCACATC
CAATCTACTATCTCCAAAGAAATAATGTGAAACAACAGTTGTTGCTGATG
CTCTAACTCAGCGGTCATATACTACTGCGTTGCATCTATCATGTCCACCT
ATCCACGAAGAAATCCACACTTGTTTTCCAAAAAAATGAGGATTGACAGA
TAAATGGATTAATTGCTTGATCATTGTAAAAATTCTTCCTGTTTGCTCTC
GTAACAGGATACATATATATCATTTTCGCTCTCCTCTAGAACGAATCTAC
TCTCCTTCTTACTGACGGCACACTACTCATCTTGCCTGTTCATATCCATG
CGTGCGTTCCACCTCCCACCCCCACAACTCTAACCTCAGTTCTGCGTGAT
GAACCCGAAGGAAGCCTTGATCCCAATGCGAAGCACGTCCCAGCTCCAGC
GACAGCAACAACAAAATCATCACACTATGCAGCACCTCCACCACCATCAC
CACCTGCACCGCGGTGCCCCCCATCCTCACACCATGACCGGCATCCACCC
GCAAGGCGCGAACGACATGCGCCTCTCTCTTTCCCCTTCGAGCGAGTCGC
GCAATCCCTACGGAGCCCAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2113:10202..18471+

>mRNA_H-paniculata_contig2113.5523.1 ID=mRNA_H-paniculata_contig2113.5523.1|Name=mRNA_H-paniculata_contig2113.5523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig2113:10202..18471+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCGCGGCGGCGACTAAGCTGACGACCCTGCAAATATGCTCGCGGCG
GCGACTAAGCTGACGACCCTGCAAATCTCAAACTGGTTCACAAACAAGAG
GAAGAGGCACTGGACCCCTGTCATTAAAAAGCGAACCAGATCTCCGAGGG
ACTTCTTTGAGCTCAAACTGGTTCACAAACAAGAGGAAGAGGCACTGGAC
CCCTGTCATTAAAAAGCGAACCAGATCTCCGAGGGACTTCTTTGAGTTCT
GCGTGATGAACCCGAAGGAAGCCTTGATCCCAATGCGAAGCACGTCCCAG
CTCCAGCGACAGCAACAACAAAATCATCACACTATGCAGCACCTCCACCA
CCATCACCACCTGCACCGCGGTGCCCCCCATCCTCACACCATGACCGGCA
TCCACCCGCAAGGCGCGAACGACATGCGCCTCTCTCTTTCCCCTTCGAGC
GAGTCGCGCAATCCCTACGGAGCCCACTTCTGCGTGATGAACCCGAAGGA
AGCCTTGATCCCAATGCGAAGCACGTCCCAGCTCCAGCGACAGCAACAAC
AAAATCATCACACTATGCAGCACCTCCACCACCATCACCACCTGCACCGC
GGTGCCCCCCATCCTCACACCATGACCGGCATCCACCCGCAAGGCGCGAA
CGACATGCGCCTCTCTCTTTCCCCTTCGAGCGAGTCGCGCAATCCCTACG
GAGCCCAC
back to top