prot_H-paniculata_contig2104.5498.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2104.5498.1
Unique Nameprot_H-paniculata_contig2104.5498.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length173
Homology
BLAST of mRNA_H-paniculata_contig2104.5498.1 vs. uniprot
Match: D8LCH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH0_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 3.000e-7
Identity = 49/109 (44.95%), Postives = 61/109 (55.96%), Query Frame = 0
Query:   50 DGSR-RKKRTLWSIAQQADELSQSNFVTGVFADVIGKTASPPXXXKAEVAPTSSATGSMTTRTRDRASLKSSRTTAAIVTAAAYGDASMYNSRPQQRTGTMGASSTSRL 157
            DGSR R+ RTLW+IAQ ADELSQSNFVTGVFAD+   +          +       G      + +A+    R   A VTAAAYGDA +YN    +R G+  A+S S L
Sbjct:  258 DGSRVRRGRTLWAIAQGADELSQSNFVTGVFADIKANS----------IGSVGGGAGG-----KPQAAKPGRR---AAVTAAAYGDARLYN----RRVGSSAAASASAL 344          
BLAST of mRNA_H-paniculata_contig2104.5498.1 vs. uniprot
Match: A0A6H5J8H1_9PHAE (Structure-specific endonuclease subunit SLX4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 5.700e-7
Identity = 54/127 (42.52%), Postives = 64/127 (50.39%), Query Frame = 0
Query:   16 LVRRRSSGGRKSESVATGVVNGERLGRRDDETSTDGSR-RKKRTLWSIAQQADELSQSNFVTGVFADVIGKTASPPXXXKAEVAPTSSATGSMTTRTRDRASLKSSRTTAAIVTAAAYGDASMYNSR 141
            L+RRRS GG           NG+R          DGSR R+ RTLW+IAQ ADELSQS+FVTGVFAD+   +             T    G    +     + K  R   A VTAAAYGDA +YN R
Sbjct:  583 LIRRRSGGGANG--------NGQR-----STPGGDGSRARRGRTLWAIAQGADELSQSDFVTGVFADIRANS-------------TGGVGGGAGGKPH---AAKPGRR--AAVTAAAYGDARLYNRR 678          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2104.5498.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCH0_ECTSI3.000e-744.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8H1_9PHAE5.700e-742.52Structure-specific endonuclease subunit SLX4 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2104contigH-paniculata_contig2104:12097..12615 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2104.5498.1mRNA_H-paniculata_contig2104.5498.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2104 12097..12617 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2104.5498.1 ID=prot_H-paniculata_contig2104.5498.1|Name=mRNA_H-paniculata_contig2104.5498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp
GDDADDVTVITRTATLVRRRSSGGRKSESVATGVVNGERLGRRDDETSTD
GSRRKKRTLWSIAQQADELSQSNFVTGVFADVIGKTASPPPPPKAEVAPT
SSATGSMTTRTRDRASLKSSRTTAAIVTAAAYGDASMYNSRPQQRTGTMG
ASSTSRLMAKCTSGGASGGAVDG
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