mRNA_H-paniculata_contig2104.5498.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2104.5498.1
Unique NamemRNA_H-paniculata_contig2104.5498.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2104.5498.1 vs. uniprot
Match: D8LCH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH0_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 3.000e-7
Identity = 49/109 (44.95%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:  148 DGSR-RKKRTLWSIAQQADELSQSNFVTGVFADVIGKTASPPXXXKAEVAPTSSATGSMTTRTRDRASLKSSRTTAAIVTAAAYGDASMYNSRPQQRTGTMGASSTSRL 471
            DGSR R+ RTLW+IAQ ADELSQSNFVTGVFAD+   +          +       G      + +A+    R   A VTAAAYGDA +YN    +R G+  A+S S L
Sbjct:  258 DGSRVRRGRTLWAIAQGADELSQSNFVTGVFADIKANS----------IGSVGGGAGG-----KPQAAKPGRR---AAVTAAAYGDARLYN----RRVGSSAAASASAL 344
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BLAST of mRNA_H-paniculata_contig2104.5498.1 vs. uniprot
Match: A0A6H5J8H1_9PHAE (Structure-specific endonuclease subunit SLX4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 5.700e-7
Identity = 54/127 (42.52%), Postives = 64/127 (50.39%), Query Frame = 1 
Query:   46 LVRRRSSGGRKSESVATGVVNGERLGRRDDETSTDGSR-RKKRTLWSIAQQADELSQSNFVTGVFADVIGKTASPPXXXKAEVAPTSSATGSMTTRTRDRASLKSSRTTAAIVTAAAYGDASMYNSR 423
            L+RRRS GG           NG+R          DGSR R+ RTLW+IAQ ADELSQS+FVTGVFAD+   +             T    G    +     + K  R   A VTAAAYGDA +YN R
Sbjct:  583 LIRRRSGGGANG--------NGQR-----STPGGDGSRARRGRTLWAIAQGADELSQSDFVTGVFADIRANS-------------TGGVGGGAGGKPH---AAKPGRR--AAVTAAAYGDARLYNRR 678
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2104.5498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCH0_ECTSI3.000e-744.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8H1_9PHAE5.700e-742.52Structure-specific endonuclease subunit SLX4 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2104contigH-paniculata_contig2104:12097..12617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size522
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929557.168551-CDS-H-paniculata_contig2104:12096..126151622929557.168551-CDS-H-paniculata_contig2104:12096..12615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2104 12097..12615 +
1691480912.6412978-CDS-H-paniculata_contig2104:12096..126151691480912.6412978-CDS-H-paniculata_contig2104:12096..12615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2104 12097..12615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2104.5498.1prot_H-paniculata_contig2104.5498.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2104 12097..12615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2104.5498.1

>prot_H-paniculata_contig2104.5498.1 ID=prot_H-paniculata_contig2104.5498.1|Name=mRNA_H-paniculata_contig2104.5498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp
GDDADDVTVITRTATLVRRRSSGGRKSESVATGVVNGERLGRRDDETSTD
GSRRKKRTLWSIAQQADELSQSNFVTGVFADVIGKTASPPPPPKAEVAPT
SSATGSMTTRTRDRASLKSSRTTAAIVTAAAYGDASMYNSRPQQRTGTMG
ASSTSRLMAKCTSGGASGGAVDG
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mRNA from alignment at H-paniculata_contig2104:12097..12617+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2104.5498.1 ID=mRNA_H-paniculata_contig2104.5498.1|Name=mRNA_H-paniculata_contig2104.5498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=521bp|location=Sequence derived from alignment at H-paniculata_contig2104:12097..12617+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGACGACGCCGACGATGTCACTGTTATAACACGAACGGCAACTCTTGT
CCGTCGGCGGAGCAGTGGAGGACGAAAAAGTGAGAGTGTTGCCACCGGTG
TCGTCAACGGCGAACGTCTAGGGAGGAGAGACGACGAAACCAGCACGGAC
GGATCGAGGAGGAAGAAAAGGACACTCTGGAGTATTGCGCAGCAGGCGGA
CGAACTCAGCCAGTCTAACTTCGTCACCGGAGTGTTCGCGGATGTTATCG
GTAAGACGGCATCGCCACCGCCGCCTCCGAAAGCGGAAGTGGCGCCAACT
TCGAGTGCCACCGGGTCGATGACGACGCGAACTCGAGACCGCGCTTCGTT
GAAATCATCCAGGACGACAGCGGCAATCGTCACCGCAGCAGCGTACGGCG
ACGCGAGCATGTACAACAGTCGTCCCCAACAGAGAACTGGCACGATGGGT
GCCTCCTCTACCTCGAGATTGATGGCGAAATGTACATCTGGAGGCGCCAG
CGGTGGTGCGGTTGATGGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2104:12097..12617+

>mRNA_H-paniculata_contig2104.5498.1 ID=mRNA_H-paniculata_contig2104.5498.1|Name=mRNA_H-paniculata_contig2104.5498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig2104:12097..12617+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGACGACGCCGACGATGTCACTGTTATAACACGAACGGCAACTCTTGT
CCGTCGGCGGAGCAGTGGAGGACGAAAAAGTGAGAGTGTTGCCACCGGTG
TCGTCAACGGCGAACGTCTAGGGAGGAGAGACGACGAAACCAGCACGGAC
GGATCGAGGAGGAAGAAAAGGACACTCTGGAGTATTGCGCAGCAGGCGGA
CGAACTCAGCCAGTCTAACTTCGTCACCGGAGTGTTCGCGGATGTTATCG
GTAAGACGGCATCGCCACCGCCGCCTCCGAAAGCGGAAGTGGCGCCAACT
TCGAGTGCCACCGGGTCGATGACGACGCGAACTCGAGACCGCGCTTCGTT
GAAATCATCCAGGACGACAGCGGCAATCGTCACCGCAGCAGCGTACGGCG
ACGCGAGCATGTACAACAGTCGTCCCCAACAGAGAACTGGCACGATGGGT
GCCTCCTCTACCTCGAGATTGATGGCGAAATGTACATCTGGAGGCGCCAG
CGGTGGTGCGGTTGATGGGGGCGACGACGCCGACGATGTCACTGTTATAA
CACGAACGGCAACTCTTGTCCGTCGGCGGAGCAGTGGAGGACGAAAAAGT
GAGAGTGTTGCCACCGGTGTCGTCAACGGCGAACGTCTAGGGAGGAGAGA
CGACGAAACCAGCACGGACGGATCGAGGAGGAAGAAAAGGACACTCTGGA
GTATTGCGCAGCAGGCGGACGAACTCAGCCAGTCTAACTTCGTCACCGGA
GTGTTCGCGGATGTTATCGGTAAGACGGCATCGCCACCGCCGCCTCCGAA
AGCGGAAGTGGCGCCAACTTCGAGTGCCACCGGGTCGATGACGACGCGAA
CTCGAGACCGCGCTTCGTTGAAATCATCCAGGACGACAGCGGCAATCGTC
ACCGCAGCAGCGTACGGCGACGCGAGCATGTACAACAGTCGTCCCCAACA
GAGAACTGGCACGATGGGTGCCTCCTCTACCTCGAGATTGATGGCGAAAT
GTACATCTGGAGGCGCCAGCGGTGGTGCGGTTGATGGG
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