prot_H-paniculata_contig20639.5361.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig20639.5361.1
Unique Nameprot_H-paniculata_contig20639.5361.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length38
Homology
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BLAST of mRNA_H-paniculata_contig20639.5361.1 vs. uniprot
Match: D8LKL2_ECTSI (Tubulin-specific chaperone A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL2_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 7.700e-12
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0 
Query:    1 MIKEVASYEKEAKENEAKVQKMRDDGKDPADIRKQEEV 38
            M+KEVASYE EAKENEAKVQKMRDDGKD  DIRKQEEV
Sbjct:   18 MVKEVASYEVEAKENEAKVQKMRDDGKDAYDIRKQEEV 55
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BLAST of mRNA_H-paniculata_contig20639.5361.1 vs. uniprot
Match: A0A835YMR5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR5_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 2.840e-5
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 0 
Query:    1 MIKEVASYEKEAKENEAKVQKMRDDGKDPADIRKQEEV 38
            + KEVASYEKEA  NEAKV+ M+D+G+D  D+RK EE+
Sbjct:   16 LAKEVASYEKEASTNEAKVRAMKDEGRDAHDVRKAEEI 53
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20639.5361.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKL2_ECTSI7.700e-1289.47Tubulin-specific chaperone A n=1 Tax=Ectocarpus si... [more]
A0A835YMR5_9STRA2.840e-563.16P-loop containing nucleoside triphosphate hydrolas... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 5..25
NoneNo IPR availableGENE3D1.20.58.90coord: 1..38
e-value: 8.2E-11
score: 43.8
NoneNo IPR availablePRODOMPD010430coord: 1..38
e-value: 0.003
score: 89.0
IPR004226Tubulin binding cofactor APFAMPF02970TBCAcoord: 1..38
e-value: 2.8E-10
score: 40.4
IPR036126Tubulin binding cofactor A superfamilySUPERFAMILY46988Tubulin chaperone cofactor Acoord: 2..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20639contigH-paniculata_contig20639:3124..3237 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20639.5361.1mRNA_H-paniculata_contig20639.5361.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig20639 3124..3240 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig20639.5361.1 ID=prot_H-paniculata_contig20639.5361.1|Name=mRNA_H-paniculata_contig20639.5361.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=38bp
MIKEVASYEKEAKENEAKVQKMRDDGKDPADIRKQEEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004226TBCA
IPR036126TBCA_sf