mRNA_H-paniculata_contig20639.5361.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20639.5361.1
Unique NamemRNA_H-paniculata_contig20639.5361.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20639.5361.1 vs. uniprot
Match: D8LKL2_ECTSI (Tubulin-specific chaperone A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL2_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.830e-12
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 RMIKEVASYEKEAKENEAKVQKMRDDGKDPADIRKQEEV 117
            RM+KEVASYE EAKENEAKVQKMRDDGKD  DIRKQEEV
Sbjct:   17 RMVKEVASYEVEAKENEAKVQKMRDDGKDAYDIRKQEEV 55
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BLAST of mRNA_H-paniculata_contig20639.5361.1 vs. uniprot
Match: A0A835YMR5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR5_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.160e-5
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 RMIKEVASYEKEAKENEAKVQKMRDDGKDPADIRKQEEV 117
            R+ KEVASYEKEA  NEAKV+ M+D+G+D  D+RK EE+
Sbjct:   15 RLAKEVASYEKEASTNEAKVRAMKDEGRDAHDVRKAEEI 53
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BLAST of mRNA_H-paniculata_contig20639.5361.1 vs. uniprot
Match: A0A7S2W3S2_9STRA (Tubulin-specific chaperone A n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3S2_9STRA)

HSP 1 Score: 46.6 bits (109), Expect = 4.590e-5
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 RMIKEVASYEKEAKENEAKVQKMRDDGKDPADIRKQEEV 117
            RM KEVA Y +EA+ENEA+VQK +D GKD  D++K EEV
Sbjct:   25 RMAKEVAFYHREAEENEARVQKFKDAGKDIHDVKKAEEV 63
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BLAST of mRNA_H-paniculata_contig20639.5361.1 vs. uniprot
Match: A0A6V2H5K8_9STRA (Tubulin-specific chaperone A n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2H5K8_9STRA)

HSP 1 Score: 45.8 bits (107), Expect = 7.290e-5
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 RMIKEVASYEKEAKENEAKVQKMRDDGKDPADIRKQEEV 117
            R+ KE   YEKE KENE K+ KM+ DG+DP DI+K EEV
Sbjct:   20 RLAKEAGYYEKEVKENEGKLAKMKADGRDPYDIKKFEEV 58
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BLAST of mRNA_H-paniculata_contig20639.5361.1 vs. uniprot
Match: A0A6U3QVJ1_9STRA (Tubulin-specific chaperone A n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3QVJ1_9STRA)

HSP 1 Score: 45.8 bits (107), Expect = 7.750e-5
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 RMIKEVASYEKEAKENEAKVQKMRDDGKDPADIRKQEEV 117
            R+ KE   YEKE KENE K+ KM+ DG+DP DI+K EEV
Sbjct:   24 RLAKEAGYYEKEVKENEGKLAKMKADGRDPYDIKKFEEV 62
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BLAST of mRNA_H-paniculata_contig20639.5361.1 vs. uniprot
Match: A0A482SNW4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNW4_9ARCH)

HSP 1 Score: 45.1 bits (105), Expect = 7.840e-5
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:    1 RMIKEVASYEKEAKENEAKVQKMRDDGKD 87
            RM+KEVASYEKE   NEA+VQKMRDDG+D
Sbjct:   26 RMLKEVASYEKEVITNEARVQKMRDDGRD 54
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20639.5361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LKL2_ECTSI2.830e-1289.74Tubulin-specific chaperone A n=1 Tax=Ectocarpus si... [more]
A0A835YMR5_9STRA1.160e-564.10P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2W3S2_9STRA4.590e-564.10Tubulin-specific chaperone A n=1 Tax=Rhizochromuli... [more]
A0A6V2H5K8_9STRA7.290e-561.54Tubulin-specific chaperone A n=2 Tax=Ditylum brigh... [more]
A0A6U3QVJ1_9STRA7.750e-561.54Tubulin-specific chaperone A n=1 Tax=Ditylum brigh... [more]
A0A482SNW4_9ARCH7.840e-579.31Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20639contigH-paniculata_contig20639:3124..3240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue5.3e-08
Seed eggNOG ortholog2880.D8LKL2
Preferred nameTBCA
KEGG koko:K17292
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0006457,GO:0007021,GO:0007023,GO:0008092,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0022607,GO:0031974,GO:0031981,GO:0034622,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044183,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048487,GO:0051087,GO:0065003,GO:0070013,GO:0071840
EggNOG free text desc.post-chaperonin tubulin folding pathway
EggNOG OGsKOG3470@1,KOG3470@2759
Ec32 ortholog descriptionputative: Beta-tubulin folding cofactor A
Ec32 orthologEc-16_003390.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147,ko04812
Exons1
Model size117
Cds size114
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929538.808522-CDS-H-paniculata_contig20639:3123..32371622929538.808522-CDS-H-paniculata_contig20639:3123..3237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20639 3124..3237 -
1691480904.3488376-CDS-H-paniculata_contig20639:3123..32371691480904.3488376-CDS-H-paniculata_contig20639:3123..3237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20639 3124..3237 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929538.8199759-UTR-H-paniculata_contig20639:3237..32401622929538.8199759-UTR-H-paniculata_contig20639:3237..3240Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20639 3238..3240 -
1691480904.3585851-UTR-H-paniculata_contig20639:3237..32401691480904.3585851-UTR-H-paniculata_contig20639:3237..3240Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20639 3238..3240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20639.5361.1prot_H-paniculata_contig20639.5361.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20639 3124..3237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20639.5361.1

>prot_H-paniculata_contig20639.5361.1 ID=prot_H-paniculata_contig20639.5361.1|Name=mRNA_H-paniculata_contig20639.5361.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=38bp
MIKEVASYEKEAKENEAKVQKMRDDGKDPADIRKQEEV
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mRNA from alignment at H-paniculata_contig20639:3124..3240-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20639.5361.1 ID=mRNA_H-paniculata_contig20639.5361.1|Name=mRNA_H-paniculata_contig20639.5361.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=117bp|location=Sequence derived from alignment at H-paniculata_contig20639:3124..3240- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGATGATAAAGGAGGTGGCGAGTTACGAGAAGGAAGCCAAGGAGAACGA
AGCTAAAGTGCAGAAGATGAGAGACGATGGGAAGGATCCTGCCGACATCC
GGAAGCAGGAAGAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig20639:3124..3240-

>mRNA_H-paniculata_contig20639.5361.1 ID=mRNA_H-paniculata_contig20639.5361.1|Name=mRNA_H-paniculata_contig20639.5361.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at H-paniculata_contig20639:3124..3240- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATAAAGGAGGTGGCGAGTTACGAGAAGGAAGCCAAGGAGAACGAAGC
TAAAGTGCAGAAGATGAGAGACGATGGGAAGGATCCTGCCGACATCCGGA
AGCAGGAAGAGGTGATGATAAAGGAGGTGGCGAGTTACGAGAAGGAAGCC
AAGGAGAACGAAGCTAAAGTGCAGAAGATGAGAGACGATGGGAAGGATCC
TGCCGACATCCGGAAGCAGGAAGAGGTG
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