prot_H-paniculata_contig1979.5040.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig1979.5040.1
Unique Name	prot_H-paniculata_contig1979.5040.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	581

Homology

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BLAST of mRNA_H-paniculata_contig1979.5040.1 vs. uniprot
Match: D8LM12_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM12_ECTSI)

HSP 1 Score: 508 bits (1307), Expect = 2.530e-171
Identity = 328/601 (54.58%), Postives = 382/601 (63.56%), Query Frame = 0

Query:    1 MDELWTKGRKHVKVSKLYMRALLRRGPSIFVALAWSQVFWLVLEASAGNEDSRGYVRISSVVCYATALHILAHFLLFRC----RKLSHHAFEFLLDLVTDVVGFAWINVADEMLAQVFYVRAKTAFTYAVLSCFLTWVAMAAGTGARDCLNWPVEFEETANQFVAGSCALPTSWLVTQAVHIGLYGFFYRTSAANGPQNGSGKGDGQDVDVHLAASLFLLVYALLCSVVASRVLGGTVAAAVAAGEMHAEGGDGHGSXXXXXXXXXGAGREGGGPQDSSDRVLRAVEAGGPFTAALASDVEHV------GSRHDNSATHHSGLSLGSLRDGAS-------SGRPRVPDGGGDKGGADCVAVDTPSGTDIHNEEGAVAAAARTRGQSLRRGTKIYLRLTAGMMVGWAYNLWGQVEFRQEELEFRFGPALGATVYALIATGLGVCIMVRGADRLDSVGVSGSGQPTGSDGAG-VVNDNLGRGEGDR--GWRFCCSSRARSRWDEDNSDGGEWRKAVFALHMKRMLVVVGGVSLMVGWAWEEAFDLMLEGCLGDSADVGMILAKVALAVFSTVVVLGLEIVKVK-----GGENRGHGGVGHNSG 576
            MDE++ KGR+H+K+SKLY++ LL+RGP+IFVALAWSQ FWL+LEA+AGNEDSRGYVR+SSV CYA ALH   H LL R     RKLSHHA EFLLDLVTDVVGFAWINVA+EMLAQVF VRAKT   YA L+   +  AM  G+ AR  L+WPV FEETANQF AGS ALPTSWLVTQ VHIGLYGFFYRT+   G + G G+ D   VDV LAASLFLL YALLCS +A+RV+GGTVAA                 XXXXXXXX      GG     SD V+RA+ + G  TAA ASD          G    +S     G    S R+G         S   +V DGGG++G A                  A    AR    SLRRG K Y+RLT GMMVGWAYNLWGQVEFRQEELEFRFGPALGA  YA ++T LGVC+MVRGAD+L       +G     +GAG  VND++G   G R  G  F        R +ED  +      AV + H +R+LVVVGGVSL+VGWAWEEAFDL LEG LGD AD   ++AK++LAV +TVVVLG E+ +       GG+   H G G   G
Sbjct:    1 MDEVYAKGRRHLKISKLYLKGLLKRGPNIFVALAWSQAFWLILEATAGNEDSRGYVRLSSVACYALALHAGGHLLLHRYSSGRRKLSHHALEFLLDLVTDVVGFAWINVAEEMLAQVFEVRAKTTLVYAALAFAASLGAMELGSLARSLLDWPVGFEETANQFDAGSFALPTSWLVTQGVHIGLYGFFYRTAGGQGGRGGDGEED-DVVDVRLAASLFLLAYALLCSALATRVIGGTVAAXXXXXXXX--------XXXXXXXXXLTRSNSGGSTGSRSDLVIRAISSYG-VTAAQASDAAXXXXXXXXGDVEASSTPSCGGGRNTSYREGGGDVADVGPSNSTKVGDGGGERGAAPLAXXXXXXXXXXXXXXAAGGEDARR--DSLRRGLKAYMRLTVGMMVGWAYNLWGQVEFRQEELEFRFGPALGAAAYAALSTALGVCVMVRGADKL-------AGSNRRKNGAGGAVNDSVGGALGSRPGGGYFHVE-----RPEEDGEETRRRDAAVRSYHARRLLVVVGGVSLVVGWAWEEAFDLALEGLLGDEADAATVVAKLSLAVAATVVVLGREVRRAGRRDAGGGDLHDHNGAGEGGG 577

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig1979.5040.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig1979.5040.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LM12_ECTSI	2.530e-171	54.58	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 21..43
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 430..500
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 107..120
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 55..77
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 205..226
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 186..204
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 559..581
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 394..404
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 44..54
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 376..393
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 537..558
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 518..536
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..20
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 227..375
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 78..88
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 405..429
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 139..158
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 501..517
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 89..106
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 159..185
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 121..138
None	No IPR available	TMHMM	TMhelix		coord: 376..395
None	No IPR available	TMHMM	TMhelix		coord: 120..142
None	No IPR available	TMHMM	TMhelix		coord: 21..43
None	No IPR available	TMHMM	TMhelix		coord: 536..558
None	No IPR available	TMHMM	TMhelix		coord: 58..77
None	No IPR available	TMHMM	TMhelix		coord: 405..427
None	No IPR available	TMHMM	TMhelix		coord: 502..521
None	No IPR available	TMHMM	TMhelix		coord: 209..231

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig1979	contig	H-paniculata_contig1979:3262..7138 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1979.5040.1	mRNA_H-paniculata_contig1979.5040.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig1979 3262..7138 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig1979.5040.1 ID=prot_H-paniculata_contig1979.5040.1|Name=mRNA_H-paniculata_contig1979.5040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=581bp
MDELWTKGRKHVKVSKLYMRALLRRGPSIFVALAWSQVFWLVLEASAGNE
DSRGYVRISSVVCYATALHILAHFLLFRCRKLSHHAFEFLLDLVTDVVGF
AWINVADEMLAQVFYVRAKTAFTYAVLSCFLTWVAMAAGTGARDCLNWPV
EFEETANQFVAGSCALPTSWLVTQAVHIGLYGFFYRTSAANGPQNGSGKG
DGQDVDVHLAASLFLLVYALLCSVVASRVLGGTVAAAVAAGEMHAEGGDG
HGSHGSGATAATGAGREGGGPQDSSDRVLRAVEAGGPFTAALASDVEHVG
SRHDNSATHHSGLSLGSLRDGASSGRPRVPDGGGDKGGADCVAVDTPSGT
DIHNEEGAVAAAARTRGQSLRRGTKIYLRLTAGMMVGWAYNLWGQVEFRQ
EELEFRFGPALGATVYALIATGLGVCIMVRGADRLDSVGVSGSGQPTGSD
GAGVVNDNLGRGEGDRGWRFCCSSRARSRWDEDNSDGGEWRKAVFALHMK
RMLVVVGGVSLMVGWAWEEAFDLMLEGCLGDSADVGMILAKVALAVFSTV
VVLGLEIVKVKGGENRGHGGVGHNSGVGANG