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Homology
BLAST of mRNA_H-paniculata_contig1979.5040.1 vs. uniprot
Match: D8LM12_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM12_ECTSI) HSP 1 Score: 508 bits (1307), Expect = 2.530e-171 Identity = 328/601 (54.58%), Postives = 382/601 (63.56%), Query Frame = 1
Query: 1 MDELWTKGRKHVKVSKLYMRALLRRGPSIFVALAWSQVFWLVLEASAGNEDSRGYVRISSVVCYATALHILAHFLLFRC----RKLSHHAFEFLLDLVTDVVGFAWINVADEMLAQVFYVRAKTAFTYAVLSCFLTWVAMAAGTGARDCLNWPVEFEETANQFVAGSCALPTSWLVTQAVHIGLYGFFYRTSAANGPQNGSGKGDGQDVDVHLAASLFLLVYALLCSVVASRVLGGTVAAAVAAGEMHAEGGDGHGSXXXXXXXXXGAGREGGGPQDSSDRVLRAVEAGGPFTAALASDVEHV------GSRHDNSATHHSGLSLGSLRDGAS-------SGRPRVPDGGGDKGGADCVAVDTPSGTDIHNEEGAVAAAARTRGQSLRRGTKIYLRLTAGMMVGWAYNLWGQVEFRQEELEFRFGPALGATVYALIATGLGVCIMVRGADRLDSVGVSGSGQPTGSDGAG-VVNDNLGRGEGDR--GWRFCCSSRARSRWDEDNSDGGEWRKAVFALHMKRMLVVVGGVSLMVGWAWEEAFDLMLEGCLGDSADVGMILAKVALAVFSTVVVLGLEIVKVK-----GGENRGHGGVGHNSG 1728
MDE++ KGR+H+K+SKLY++ LL+RGP+IFVALAWSQ FWL+LEA+AGNEDSRGYVR+SSV CYA ALH H LL R RKLSHHA EFLLDLVTDVVGFAWINVA+EMLAQVF VRAKT YA L+ + AM G+ AR L+WPV FEETANQF AGS ALPTSWLVTQ VHIGLYGFFYRT+ G + G G+ D VDV LAASLFLL YALLCS +A+RV+GGTVAA XXXXXXXX GG SD V+RA+ + G TAA ASD G +S G S R+G S +V DGGG++G A A AR SLRRG K Y+RLT GMMVGWAYNLWGQVEFRQEELEFRFGPALGA YA ++T LGVC+MVRGAD+L +G +GAG VND++G G R G F R +ED + AV + H +R+LVVVGGVSL+VGWAWEEAFDL LEG LGD AD ++AK++LAV +TVVVLG E+ + GG+ H G G G
Sbjct: 1 MDEVYAKGRRHLKISKLYLKGLLKRGPNIFVALAWSQAFWLILEATAGNEDSRGYVRLSSVACYALALHAGGHLLLHRYSSGRRKLSHHALEFLLDLVTDVVGFAWINVAEEMLAQVFEVRAKTTLVYAALAFAASLGAMELGSLARSLLDWPVGFEETANQFDAGSFALPTSWLVTQGVHIGLYGFFYRTAGGQGGRGGDGEED-DVVDVRLAASLFLLAYALLCSALATRVIGGTVAAXXXXXXXX--------XXXXXXXXXLTRSNSGGSTGSRSDLVIRAISSYG-VTAAQASDAAXXXXXXXXGDVEASSTPSCGGGRNTSYREGGGDVADVGPSNSTKVGDGGGERGAAPLAXXXXXXXXXXXXXXAAGGEDARR--DSLRRGLKAYMRLTVGMMVGWAYNLWGQVEFRQEELEFRFGPALGAAAYAALSTALGVCVMVRGADKL-------AGSNRRKNGAGGAVNDSVGGALGSRPGGGYFHVE-----RPEEDGEETRRRDAAVRSYHARRLLVVVGGVSLVVGWAWEEAFDLALEGLLGDEADAATVVAKLSLAVAATVVVLGREVRRAGRRDAGGGDLHDHNGAGEGGG 577
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-14_002440.1 |
| Exons | 5 |
| Model size | 1743 |
| Cds size | 1743 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1979.5040.1 >prot_H-paniculata_contig1979.5040.1 ID=prot_H-paniculata_contig1979.5040.1|Name=mRNA_H-paniculata_contig1979.5040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=581bp
MDELWTKGRKHVKVSKLYMRALLRRGPSIFVALAWSQVFWLVLEASAGNE
DSRGYVRISSVVCYATALHILAHFLLFRCRKLSHHAFEFLLDLVTDVVGF
AWINVADEMLAQVFYVRAKTAFTYAVLSCFLTWVAMAAGTGARDCLNWPV
EFEETANQFVAGSCALPTSWLVTQAVHIGLYGFFYRTSAANGPQNGSGKG
DGQDVDVHLAASLFLLVYALLCSVVASRVLGGTVAAAVAAGEMHAEGGDG
HGSHGSGATAATGAGREGGGPQDSSDRVLRAVEAGGPFTAALASDVEHVG
SRHDNSATHHSGLSLGSLRDGASSGRPRVPDGGGDKGGADCVAVDTPSGT
DIHNEEGAVAAAARTRGQSLRRGTKIYLRLTAGMMVGWAYNLWGQVEFRQ
EELEFRFGPALGATVYALIATGLGVCIMVRGADRLDSVGVSGSGQPTGSD
GAGVVNDNLGRGEGDRGWRFCCSSRARSRWDEDNSDGGEWRKAVFALHMK
RMLVVVGGVSLMVGWAWEEAFDLMLEGCLGDSADVGMILAKVALAVFSTV
VVLGLEIVKVKGGENRGHGGVGHNSGVGANG back to topmRNA from alignment at H-paniculata_contig1979:3262..7138- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1979.5040.1 ID=mRNA_H-paniculata_contig1979.5040.1|Name=mRNA_H-paniculata_contig1979.5040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3877bp|location=Sequence derived from alignment at H-paniculata_contig1979:3262..7138- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGAACTATGGACAAAAGGTCGGAAGCATGTGAAGGTATCCAAGCT
TTACATGAGAGCTTTGCTCAGACGGGGCCCTAGCATATTCGTGGCACTGG
CATGGTCTCAGGTAAGGAGAGAGCAAATTGGTTTGAACTGACAATGTTGG
AACATACCAGTAATGAAGTATTGTTGGGTCATACCGCACAATCTTTTACA
AGGAGTACAGTCAGTACAAGAGCACTGCATTGGCCCCCACCTCTACAGCC
TCCATAGCGGAGGAGCTATCGTGCGGTTGAAGGTGCCGTTGCGTGTGATG
TAAGCGTTTATTTTAAAAAGGTACCTTGTACTCGGAACACGGCTTTCGAT
ACTTCCTGTGCCCAAGCTAGCATGTCTGGGGCTCGATCCACATGCTTAAA
CTGAAAGGTCTGGTAGTTATGGACTTCAGCCCGCAGCCCGCTCAAACGAA
CGAAAAGACGAACCAAAGCACAACGACAAAGGAAAGGATGTCCGATCGGT
TTAGTCGTGTATCGCGGGTGTAATTAATACTTCAGGACATGGTGAACTAA
GCCCTAGAACAGCTAGTAGAGGGAATCGGTAGCATTTGTTTAGCTCCATT
AAAACTGAAGCACTCAGCACTCCTCTCTGTGATGTCCGTCACAGATCGTA
ATGGGCATCGTCTACGACGCTATTTGCCTGTGGAGCACATTCCTGGCGTT
CCTGGCGTTCCTGAACCCCGCCCATCCACAACAACCAATGGCATTTTGCC
CTTTTGGGGGGATAGCATTTCTAGCTCAGGATGACCAGTTCATTTACAGA
ACAAAACCCAATCTGCAGAGTAGGCGATATCCCCTCGAGAGCTAGTCTCT
CCTGGGAGCGTCGTGTTTTCATATAGCACTGTTTGTGTATTGTACTGTAA
AGATAACGTATTGTACTTGAGGTATGTCGCACCTACTAATTATTAGTTCA
CTGCCTAGCTCCAGCTCTATTTTTCGGCGTCTTGGTATTTGGCCCCTCTT
GCCCGTGCACAGAGGACGTTATCATCCAGGTCAGGAGTGAGTGCCTTCGT
TTTTTCGCCCGTTTCCAACCCTTCTGTCGCCGTTTACCCTCTATTTGAAT
CGCCAGTTCAAAATTTGAGATCGTTGTTTGGAAGCTCCGAGTCTCTCGGC
GTGTAACATTATTTGAAAGGATGAGCTACTTAGCAGGTTCACGACAAACA
CAAAGCAGCGCAGTGAGCAGTCCACCCAGCACCTTCCATACTTTCCCCCG
CTGTTCTGCGCACTCTGCCGATGGAATTTGTTCTGTGGCGCAGGTGTTTT
GGTTAGTACTGGAAGCGTCTGCTGGAAATGAGGACAGTAGAGGCTACGTT
CGCATCTCGAGCGTCGTGTGCTACGCTACGGCGCTGCATATATTGGCACA
CTTTCTCTTGTTCCGATGCCGTAAACTCAGTCACCACGCCTTCGAGTTTC
TTCTTGACCTCGTGACCGATGTCGTTGGCTTTGCGTGGATCAACGTTGCG
GACGAAATGCTTGCTCAGGTGAGACACTTTGCTAACGACAGATATGTAAT
CCCTTTGTTTTCCCCCGTTGCCTTCAAGATGACGGTGCTACCTACATGTT
TGCTCCTTTATGTTGATTTTTCGGTTGCTTTGGACTCAATAAACGATGGT
CAGAAGAAGGCAGGGCTATTGGCAAAGTAACGTATTAACCCCCCTCCAGT
GAGACACCCGCATGCAATAGTGCATGCTGTGCTTAGCTCATCACAAGCGC
CTCGAGTAGTGTCGCAACAGCGGAGACCCTAAGATCCCACGTTAGCCAAA
GCAATGTGTCCGATGTTACACGTACTCACGCGATACCCGCTGTTTTACAC
ACGCACGTTTTTTGCTCCAGGTGTTTTATGTCAGAGCAAAAACCGCCTTC
ACATATGCAGTGCTTTCGTGTTTCCTAACCTGGGTGGCTATGGCTGCAGG
GACTGGCGCTCGCGACTGCCTCAATTGGCCCGTCGAGTTCGAGGAAACGG
CCAATCAGTTTGTTGCCGGCTCTTGTGCTCTGCCAACGAGGTCAGTGATC
TGACAAGGCTCATCATAGCAATACATACACGAATAGAGCTACTGCAATGG
CGTGCAGTAGACGTTTTTTAGCTTGTGCGCCGGCTCTCGTTCCATCTGAT
GAGACATATTTTCTGGTGTTGGAACAAGGCTTTGAATTTCTGACGGCTTG
ATGTTCCCTCCCTTCACGGGCTTTTTATTGTTGGGAGTGACACCTTGCGC
AAGTGGATTGAAGTCCTGTTTGTCGCCCATGTTGTAGGAATCCACCAAGT
ATGCGGTGTACAGTCCTGAGTCGAAAGTGTGTACTTGGTGCACGGGACCG
TTGTACATGGGCGTTCTTGCAGCAGAAATGGCACTCTGCACCTGCGGTTT
TCATTATCGATTCAGTAAAAGCTTGAATGATACTATTCTATATTCACACA
AACTCAACCAACACGTATACTGAGTGTACCCCCCGTGCAGTGTAGTCGAG
TGATGAGTAACACGAATACACCGACAAGCCAAGACCCGCCCCAACCCCTC
TCTCCGACCCACTCGCCACTCTTATACCCCGCTCAATCGTTTCAGCTGGC
TCGTGACCCAGGCCGTACACATTGGTCTGTATGGCTTCTTCTATCGCACC
AGTGCAGCCAACGGCCCGCAGAACGGGAGCGGCAAGGGTGATGGGCAAGA
CGTGGACGTTCACCTTGCGGCGTCTCTGTTCCTCCTTGTGTACGCGCTCC
TCTGTTCGGTAGTAGCATCACGTGTCTTGGGAGGAACGGTGGCGGCGGCC
GTCGCGGCCGGCGAAATGCATGCGGAAGGCGGCGATGGCCATGGCAGCCA
CGGAAGCGGCGCAACCGCCGCTACAGGGGCAGGAAGAGAAGGAGGTGGGC
CGCAAGATAGCAGTGATCGTGTCTTGCGTGCCGTGGAAGCAGGGGGGCCG
TTCACGGCCGCCTTGGCGTCGGACGTCGAACACGTGGGTAGTCGTCACGA
CAATAGCGCTACTCATCACTCTGGGTTATCCTTAGGCTCTCTGAGGGACG
GTGCCTCGAGTGGTCGACCTCGTGTACCCGACGGCGGCGGCGACAAGGGG
GGCGCAGATTGCGTCGCTGTCGACACACCTTCAGGGACGGATATTCACAA
CGAAGAAGGCGTTTTCGGCGATGTTCCGCAGTCTGAGGAACAGTCTTTGG
CGGAGGCAGTTGCCGCTGCGGCGCGCACGAGGGGCCAATCTCTGCGTCGA
GGCACCAAGATTTACCTGCGACTTACCGCAGGTATGATGGTTGGATGGGC
GTACAATCTCTGGGGGCAAGTGGAGTTTCGGCAGGAAGAGCTTGAATTTC
GATTCGGGCCGGCTCTCGGCGCCACTGTCTATGCTCTGATTGCCACCGGC
CTCGGCGTGTGTATCATGGTGCGAGGGGCGGATCGGCTCGACAGCGTTGG
GGTTAGCGGAAGCGGGCAACCAACTGGAAGCGATGGCGCTGGTGTTGTGA
ACGACAATTTGGGGAGGGGAGAGGGAGATCGAGGTTGGAGATTTTGTTGC
AGCAGTAGGGCGCGATCGAGGTGGGACGAGGACAACAGTGATGGTGGAGA
GTGGAGAAAAGCGGTTTTCGCGTTGCACATGAAACGCATGCTGGTTGTCG
TCGGTGGTGTCAGCCTCATGGTGGGGTGGGCATGGGAAGAGGCGTTCGAC
TTGATGCTGGAGGGTTGCCTTGGGGACTCGGCTGATGTTGGCATGATTTT
GGCAAAGGTCGCCCTCGCCGTATTTTCAACGGTGGTCGTCCTAGGCTTGG
AGATTGTGAAAGTCAAAGGTGGAGAAAATCGTGGGCACGGTGGGGTAGGG
CATAATAGCGGAGTTGGGGCGAACGGT back to topCoding sequence (CDS) from alignment at H-paniculata_contig1979:3262..7138- >mRNA_H-paniculata_contig1979.5040.1 ID=mRNA_H-paniculata_contig1979.5040.1|Name=mRNA_H-paniculata_contig1979.5040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3486bp|location=Sequence derived from alignment at H-paniculata_contig1979:3262..7138- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGAACTATGGACAAAAGGTCGGAAGCATGTGAAGGTATCCAAGCT
TTACATGAGAGCTTTGCTCAGACGGGGCCCTAGCATATTCGTGGCACTGG
CATGGTCTCAGATGGACGAACTATGGACAAAAGGTCGGAAGCATGTGAAG
GTATCCAAGCTTTACATGAGAGCTTTGCTCAGACGGGGCCCTAGCATATT
CGTGGCACTGGCATGGTCTCAGGTGTTTTGGTTAGTACTGGAAGCGTCTG
CTGGAAATGAGGACAGTAGAGGCTACGTTCGCATCTCGAGCGTCGTGTGC
TACGCTACGGCGCTGCATATATTGGCACACTTTCTCTTGTTCCGATGCCG
TAAACTCAGTCACCACGCCTTCGAGTTTCTTCTTGACCTCGTGACCGATG
TCGTTGGCTTTGCGTGGATCAACGTTGCGGACGAAATGCTTGCTCAGGTG
TTTTGGTTAGTACTGGAAGCGTCTGCTGGAAATGAGGACAGTAGAGGCTA
CGTTCGCATCTCGAGCGTCGTGTGCTACGCTACGGCGCTGCATATATTGG
CACACTTTCTCTTGTTCCGATGCCGTAAACTCAGTCACCACGCCTTCGAG
TTTCTTCTTGACCTCGTGACCGATGTCGTTGGCTTTGCGTGGATCAACGT
TGCGGACGAAATGCTTGCTCAGGTGTTTTATGTCAGAGCAAAAACCGCCT
TCACATATGCAGTGCTTTCGTGTTTCCTAACCTGGGTGGCTATGGCTGCA
GGGACTGGCGCTCGCGACTGCCTCAATTGGCCCGTCGAGTTCGAGGAAAC
GGCCAATCAGTTTGTTGCCGGCTCTTGTGCTCTGCCAACGAGGTGTTTTA
TGTCAGAGCAAAAACCGCCTTCACATATGCAGTGCTTTCGTGTTTCCTAA
CCTGGGTGGCTATGGCTGCAGGGACTGGCGCTCGCGACTGCCTCAATTGG
CCCGTCGAGTTCGAGGAAACGGCCAATCAGTTTGTTGCCGGCTCTTGTGC
TCTGCCAACGAGCTGGCTCGTGACCCAGGCCGTACACATTGGTCTGTATG
GCTTCTTCTATCGCACCAGTGCAGCCAACGGCCCGCAGAACGGGAGCGGC
AAGGGTGATGGGCAAGACGTGGACGTTCACCTTGCGGCGTCTCTGTTCCT
CCTTGTGTACGCGCTCCTCTGTTCGGTAGTAGCATCACGTGTCTTGGGAG
GAACGGTGGCGGCGGCCGTCGCGGCCGGCGAAATGCATGCGGAAGGCGGC
GATGGCCATGGCAGCCACGGAAGCGGCGCAACCGCCGCTACAGGGGCAGG
AAGAGAAGGAGGTGGGCCGCAAGATAGCAGTGATCGTGTCTTGCGTGCCG
TGGAAGCAGGGGGGCCGTTCACGGCCGCCTTGGCGTCGGACGTCGAACAC
GTGGGTAGTCGTCACGACAATAGCGCTACTCATCACTCTGGGTTATCCTT
AGGCTCTCTGAGGGACGGTGCCTCGAGTGGTCGACCTCGTGTACCCGACG
GCGGCGGCGACAAGGGGGGCGCAGATTGCGTCGCTGTCGACACACCTTCA
GGGACGGATATTCACAACGAAGAAGGCCTGGCTCGTGACCCAGGCCGTAC
ACATTGGTCTGTATGGCTTCTTCTATCGCACCAGTGCAGCCAACGGCCCG
CAGAACGGGAGCGGCAAGGGTGATGGGCAAGACGTGGACGTTCACCTTGC
GGCGTCTCTGTTCCTCCTTGTGTACGCGCTCCTCTGTTCGGTAGTAGCAT
CACGTGTCTTGGGAGGAACGGTGGCGGCGGCCGTCGCGGCCGGCGAAATG
CATGCGGAAGGCGGCGATGGCCATGGCAGCCACGGAAGCGGCGCAACCGC
CGCTACAGGGGCAGGAAGAGAAGGAGGTGGGCCGCAAGATAGCAGTGATC
GTGTCTTGCGTGCCGTGGAAGCAGGGGGGCCGTTCACGGCCGCCTTGGCG
TCGGACGTCGAACACGTGGGTAGTCGTCACGACAATAGCGCTACTCATCA
CTCTGGGTTATCCTTAGGCTCTCTGAGGGACGGTGCCTCGAGTGGTCGAC
CTCGTGTACCCGACGGCGGCGGCGACAAGGGGGGCGCAGATTGCGTCGCT
GTCGACACACCTTCAGGGACGGATATTCACAACGAAGAAGGCGCAGTTGC
CGCTGCGGCGCGCACGAGGGGCCAATCTCTGCGTCGAGGCACCAAGATTT
ACCTGCGACTTACCGCAGGTATGATGGTTGGATGGGCGTACAATCTCTGG
GGGCAAGTGGAGTTTCGGCAGGAAGAGCTTGAATTTCGATTCGGGCCGGC
TCTCGGCGCCACTGTCTATGCTCTGATTGCCACCGGCCTCGGCGTGTGTA
TCATGGTGCGAGGGGCGGATCGGCTCGACAGCGTTGGGGTTAGCGGAAGC
GGGCAACCAACTGGAAGCGATGGCGCTGGTGTTGTGAACGACAATTTGGG
GAGGGGAGAGGGAGATCGAGGTTGGAGATTTTGTTGCAGCAGTAGGGCGC
GATCGAGGTGGGACGAGGACAACAGTGATGGTGGAGAGTGGAGAAAAGCG
GTTTTCGCGTTGCACATGAAACGCATGCTGGTTGTCGTCGGTGGTGTCAG
CCTCATGGTGGGGTGGGCATGGGAAGAGGCGTTCGACTTGATGCTGGAGG
GTTGCCTTGGGGACTCGGCTGATGTTGGCATGATTTTGGCAAAGGTCGCC
CTCGCCGTATTTTCAACGGTGGTCGTCCTAGGCTTGGAGATTGTGAAAGT
CAAAGGTGGAGAAAATCGTGGGCACGGTGGGGTAGGGCATAATAGCGGAG
TTGGGGCGAACGGTGCAGTTGCCGCTGCGGCGCGCACGAGGGGCCAATCT
CTGCGTCGAGGCACCAAGATTTACCTGCGACTTACCGCAGGTATGATGGT
TGGATGGGCGTACAATCTCTGGGGGCAAGTGGAGTTTCGGCAGGAAGAGC
TTGAATTTCGATTCGGGCCGGCTCTCGGCGCCACTGTCTATGCTCTGATT
GCCACCGGCCTCGGCGTGTGTATCATGGTGCGAGGGGCGGATCGGCTCGA
CAGCGTTGGGGTTAGCGGAAGCGGGCAACCAACTGGAAGCGATGGCGCTG
GTGTTGTGAACGACAATTTGGGGAGGGGAGAGGGAGATCGAGGTTGGAGA
TTTTGTTGCAGCAGTAGGGCGCGATCGAGGTGGGACGAGGACAACAGTGA
TGGTGGAGAGTGGAGAAAAGCGGTTTTCGCGTTGCACATGAAACGCATGC
TGGTTGTCGTCGGTGGTGTCAGCCTCATGGTGGGGTGGGCATGGGAAGAG
GCGTTCGACTTGATGCTGGAGGGTTGCCTTGGGGACTCGGCTGATGTTGG
CATGATTTTGGCAAAGGTCGCCCTCGCCGTATTTTCAACGGTGGTCGTCC
TAGGCTTGGAGATTGTGAAAGTCAAAGGTGGAGAAAATCGTGGGCACGGT
GGGGTAGGGCATAATAGCGGAGTTGGGGCGAACGGT back to top
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