prot_H-paniculata_contig17972.4328.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17972.4328.1
Unique Nameprot_H-paniculata_contig17972.4328.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length183
Homology
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BLAST of mRNA_H-paniculata_contig17972.4328.1 vs. uniprot
Match: A0A6H5JV23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV23_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 5.880e-13
Identity = 42/140 (30.00%), Postives = 77/140 (55.00%), Query Frame = 0 
Query:   24 AHSLVVIQYELLCKSGTSPSMAERCRQMKEDIDVWEASVDELSHIPFWFIMQEVARLLAGVIGLWAVFGKSAGAARIYMYSWPVLFLTGTIVQFGINY---RWHIGLRQDSAVVVMAFIFNIYWVLYYTKVAWSYHMRLK 160
            A ++V   Y++ CK   +P   E C +   +I+  E  V+   ++P    ++ V  ++AG +GL+AVF  +A +A+IY+++W   F  G + ++ +     ++ I    +  VV+   +  I+ +LYY KV WS+H RLK
Sbjct:   54 AIAIVQSLYDMDCKD--APVQTEDCLKRSHEIEQMEFQVELFENLPVIVYVEAVIAMIAGAVGLFAVFKSNALSAKIYLWTWLPRFFVGLVARYTMRAEMKQYGIDNNNEPGVVINELVTAIF-LLYYVKVTWSFHQRLK 190
[Close]
BLAST of mRNA_H-paniculata_contig17972.4328.1 vs. uniprot
Match: D8LNW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW7_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.370e-12
Identity = 43/138 (31.16%), Postives = 71/138 (51.45%), Query Frame = 0 
Query:   32 YELLCKSGTSPSMAERCRQMKEDIDVWEASVDELSHIPFWFIMQEVARLLAGVIGLWAVFGKSAGAARIYMYSWPVLFLTGTIV---------QFGINYRWHIGLRQDSAVVVMAFIFNIYWVLYYTKVAWSYHMRLK 160
            Y+  CK   +P   E C Q+  +I+  E  V+   ++P    ++ +  +LAG +GL+AVF  +A +A+IY++ W   F  G +          Q+GI+         D   VV+  + ++   LY+ KVAWS+H RLK
Sbjct:   87 YDKDCKD--APVQTEDCLQLSHNIEQAEFEVELFDNLPVIVYVEAIIAMLAGAVGLFAVFKSNALSAKIYLWMWLPRFFVGLVAKYTLRAVMKQYGID-------NSDGPGVVIGHLVDVVVFLYFVKVAWSFHQRLK 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17972.4328.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JV23_9PHAE5.880e-1330.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNW7_ECTSI2.370e-1231.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 154..182
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..67
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 68..91
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 120..130
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 100..119
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 92..99
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 131..153
NoneNo IPR availableTMHMMTMhelixcoord: 68..90
NoneNo IPR availableTMHMMTMhelixcoord: 134..156
NoneNo IPR availableTMHMMTMhelixcoord: 97..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17972contigH-paniculata_contig17972:1818..3807 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17972.4328.1mRNA_H-paniculata_contig17972.4328.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17972 418..4019 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17972.4328.1 ID=prot_H-paniculata_contig17972.4328.1|Name=mRNA_H-paniculata_contig17972.4328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp
MDSPYALAFRFSSRFLFLSCRTGAHSLVVIQYELLCKSGTSPSMAERCRQ
MKEDIDVWEASVDELSHIPFWFIMQEVARLLAGVIGLWAVFGKSAGAARI
YMYSWPVLFLTGTIVQFGINYRWHIGLRQDSAVVVMAFIFNIYWVLYYTK
VAWSYHMRLKMVRDYALANNAHKEEWMAGSRV*
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