prot_H-paniculata_contig16536.3720.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig16536.3720.1
Unique Nameprot_H-paniculata_contig16536.3720.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length48
Homology
BLAST of mRNA_H-paniculata_contig16536.3720.1 vs. uniprot
Match: D7G861_ECTSI (ADP-ribosylation factor GTPase-activating protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G861_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 3.240e-21
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0
Query:    1 MDRWDAGQVTRMELGGNGQLRAWFTKCKTENSQLEMKYRTKAATLYR 47
            MDRWDAGQV RMELGGNGQL+AWFTKC+TENS LEMKYRTKAATLYR
Sbjct:   42 MDRWDAGQVRRMELGGNGQLQAWFTKCQTENSALEMKYRTKAATLYR 88          
BLAST of mRNA_H-paniculata_contig16536.3720.1 vs. uniprot
Match: A0A835ZEM7_9STRA (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEM7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.890e-14
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 0
Query:    1 MDRWDAGQVTRMELGGNGQLRAWFTKCKTENSQLEMKYRTKAATLYR 47
            +DRW+   +  ++LGGN QL +W T+CK +NS +E+KYRTKAATLYR
Sbjct:   22 LDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYR 68          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16536.3720.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G861_ECTSI3.240e-2191.49ADP-ribosylation factor GTPase-activating protein,... [more]
A0A835ZEM7_9STRA4.890e-1457.45Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038508ArfGAP domain superfamilyGENE3D3.30.40.160coord: 1..47
e-value: 2.1E-7
score: 32.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16536contigH-paniculata_contig16536:4807..4950 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16536.3720.1mRNA_H-paniculata_contig16536.3720.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig16536 4801..4950 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig16536.3720.1 ID=prot_H-paniculata_contig16536.3720.1|Name=mRNA_H-paniculata_contig16536.3720.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
MDRWDAGQVTRMELGGNGQLRAWFTKCKTENSQLEMKYRTKAATLYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038508ArfGAP_dom_sf