mRNA_H-paniculata_contig16536.3720.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16536.3720.1
Unique NamemRNA_H-paniculata_contig16536.3720.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16536.3720.1 vs. uniprot
Match: D7G861_ECTSI (ADP-ribosylation factor GTPase-activating protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G861_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 7.470e-22
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 LTMDRWDAGQVTRMELGGNGQLRAWFTKCKTENSQLEMKYRTKAATLYR 147
            L MDRWDAGQV RMELGGNGQL+AWFTKC+TENS LEMKYRTKAATLYR
Sbjct:   40 LAMDRWDAGQVRRMELGGNGQLQAWFTKCQTENSALEMKYRTKAATLYR 88
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BLAST of mRNA_H-paniculata_contig16536.3720.1 vs. uniprot
Match: A0A835ZEM7_9STRA (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEM7_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.590e-15
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 LTMDRWDAGQVTRMELGGNGQLRAWFTKCKTENSQLEMKYRTKAATLYR 147
            LT+DRW+   +  ++LGGN QL +W T+CK +NS +E+KYRTKAATLYR
Sbjct:   20 LTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYR 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16536.3720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G861_ECTSI7.470e-2289.80ADP-ribosylation factor GTPase-activating protein,... [more]
A0A835ZEM7_9STRA1.590e-1559.18Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16536contigH-paniculata_contig16536:4801..4950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue2.1e-17
Seed eggNOG ortholog2880.D7G861
KEGG koko:K12492,ko:K12493,ko:K14480
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0706@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size150
Cds size144
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929316.0921237-UTR-H-paniculata_contig16536:4800..48061622929316.0921237-UTR-H-paniculata_contig16536:4800..4806Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16536 4801..4806 +
1691480812.499976-UTR-H-paniculata_contig16536:4800..48061691480812.499976-UTR-H-paniculata_contig16536:4800..4806Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16536 4801..4806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929316.101874-CDS-H-paniculata_contig16536:4806..49501622929316.101874-CDS-H-paniculata_contig16536:4806..4950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16536 4807..4950 +
1691480812.512134-CDS-H-paniculata_contig16536:4806..49501691480812.512134-CDS-H-paniculata_contig16536:4806..4950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16536 4807..4950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16536.3720.1prot_H-paniculata_contig16536.3720.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16536 4807..4950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16536.3720.1

>prot_H-paniculata_contig16536.3720.1 ID=prot_H-paniculata_contig16536.3720.1|Name=mRNA_H-paniculata_contig16536.3720.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
MDRWDAGQVTRMELGGNGQLRAWFTKCKTENSQLEMKYRTKAATLYR*
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mRNA from alignment at H-paniculata_contig16536:4801..4950+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16536.3720.1 ID=mRNA_H-paniculata_contig16536.3720.1|Name=mRNA_H-paniculata_contig16536.3720.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig16536:4801..4950+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGACCATGGACCGATGGGACGCAGGGCAGGTCACGAGAATGGAGCTCGG
CGGCAACGGCCAGCTGAGGGCCTGGTTCACGAAGTGCAAGACTGAGAACA
GCCAACTGGAGATGAAATACCGCACGAAGGCTGCCACGCTATACCGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig16536:4801..4950+

>mRNA_H-paniculata_contig16536.3720.1 ID=mRNA_H-paniculata_contig16536.3720.1|Name=mRNA_H-paniculata_contig16536.3720.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig16536:4801..4950+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCGATGGGACGCAGGGCAGGTCACGAGAATGGAGCTCGGCGGCAA
CGGCCAGCTGAGGGCCTGGTTCACGAAGTGCAAGACTGAGAACAGCCAAC
TGGAGATGAAATACCGCACGAAGGCTGCCACGCTATACCGGTGAATGGAC
CGATGGGACGCAGGGCAGGTCACGAGAATGGAGCTCGGCGGCAACGGCCA
GCTGAGGGCCTGGTTCACGAAGTGCAAGACTGAGAACAGCCAACTGGAGA
TGAAATACCGCACGAAGGCTGCCACGCTATACCGGTGA
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