prot_H-paniculata_contig1622.3582.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig1622.3582.1
Unique Name	prot_H-paniculata_contig1622.3582.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	120

Homology

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BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: W7TN89_9STRA (Ubiquitin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN89_9STRA)

HSP 1 Score: 226 bits (575), Expect = 1.350e-73
Identity = 114/119 (95.80%), Postives = 115/119 (96.64%), Query Frame = 0

Query:    1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 119
            GKTITLDVEPSDTIE VKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFN EKM+CRKCYARLPPRAKNCRKKKCGHTN LR KKKLK
Sbjct:   10 GKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128

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BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: A0A7S3H022_9STRA (Hypothetical protein n=5 Tax=Eukaryota TaxID=2759 RepID=A0A7S3H022_9STRA)

HSP 1 Score: 222 bits (565), Expect = 9.800e-73
Identity = 111/119 (93.28%), Postives = 116/119 (97.48%), Query Frame = 0

Query:    1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 119
            GKTITL+VEPSD+I+ VKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV+DPSLAALAKTFN EKM+CRKCYARLPPRAKNCRKKKCGHTNQLR KKKLK
Sbjct:   28 GKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVFDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKLK 146

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BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: B7G5H7_PHATC (Ubiquitin extension protein 1/2 n=9 Tax=Bacillariophyta TaxID=2836 RepID=B7G5H7_PHATC)

HSP 1 Score: 216 bits (550), Expect = 1.050e-70
Identity = 109/119 (91.60%), Postives = 112/119 (94.12%), Query Frame = 0

Query:    1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 119
            GKTITLDVEPSDTI+ VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLA LAK FN +K VCRKCYARLPPRA NCRKKKCGHT+QLRPKKKLK
Sbjct:   10 GKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLALLAKGFNCDKAVCRKCYARLPPRATNCRKKKCGHTSQLRPKKKLK 128

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BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: A0A1Z5JFA3_FISSO (Large subunit ribosomal protein L40e n=4 Tax=Stramenopiles TaxID=33634 RepID=A0A1Z5JFA3_FISSO)

HSP 1 Score: 215 bits (548), Expect = 2.120e-70
Identity = 108/119 (90.76%), Postives = 112/119 (94.12%), Query Frame = 0

Query:    1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 119
            GKTITLDVEPSDTI+ VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDP+LA LAK FN +K VCRKCYARLPPRA NCRKKKCGHT+QLRPKKKLK
Sbjct:   10 GKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPTLAMLAKKFNCDKAVCRKCYARLPPRATNCRKKKCGHTSQLRPKKKLK 128

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BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: A0A0G4EN71_VITBC (Ubiquitin-like domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EN71_VITBC)

HSP 1 Score: 216 bits (549), Expect = 7.000e-70
Identity = 108/119 (90.76%), Postives = 112/119 (94.12%), Query Frame = 0

Query:    1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 119
            GKTITLDVEPSDTIE VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV +PSLA LA+ +N EKM+CRKCYARLPPRA NCRKKKCGHTNQLRPKKKLK
Sbjct:   57 GKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLAVLARKYNCEKMICRKCYARLPPRAVNCRKKKCGHTNQLRPKKKLK 175

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BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: A0A448YZG3_9STRA (Ubiquitin-like domain-containing protein n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A448YZG3_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.740e-69
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 0

Query:    1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 119
            GKTITLDVEPSDTI+ VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLA LA+ +N EK +CRKCYARLPP+A NCRKKKCGHT QLRPKKKLK
Sbjct:   10 GKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAMLARKYNCEKAICRKCYARLPPKASNCRKKKCGHTAQLRPKKKLK 128

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BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: K0RS17_THAOC (Ubiquitin-like domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RS17_THAOC)

HSP 1 Score: 215 bits (547), Expect = 1.900e-69
Identity = 107/119 (89.92%), Postives = 112/119 (94.12%), Query Frame = 0

Query:    1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 119
            GKTITLDVEPSDTI+ VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLA LAK FN EK +CRKCYARLPP+A NCRKKKCGH++QLRPKKKLK
Sbjct:   66 GKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLALLAKKFNCEKQICRKCYARLPPKATNCRKKKCGHSSQLRPKKKLK 184

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BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: W3XAR8_PESFW (Ubiquitin-60S ribosomal protein L40 n=5 Tax=leotiomyceta TaxID=716546 RepID=W3XAR8_PESFW)

HSP 1 Score: 210 bits (535), Expect = 2.170e-68
Identity = 105/119 (88.24%), Postives = 110/119 (92.44%), Query Frame = 0

Query:    1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 119
            GKTITL+VE SDTI+ VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +PSL ALA  FN EKM+CRKCYARLPPRA NCRKKKCGHTNQLRPKKKLK
Sbjct:   12 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCEKMICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 130

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BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: RL40_NEUCR (Ubiquitin-60S ribosomal protein L40 n=7 Tax=Eukaryota TaxID=2759 RepID=RL40_NEUCR)

HSP 1 Score: 210 bits (534), Expect = 2.880e-68
Identity = 104/119 (87.39%), Postives = 111/119 (93.28%), Query Frame = 0

Query:    1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 119
            GKTITL+VE SDTI+ VKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +PSL ALA  FN +KM+CRKCYARLPPRA NCRK+KCGHTNQLRPKKKLK
Sbjct:   10 GKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 128

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BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: B6K0H2_SCHJY (Ribosomal-ubiquitin fusion protein Ubi1 n=8 Tax=Ascomycota TaxID=4890 RepID=B6K0H2_SCHJY)

HSP 1 Score: 209 bits (532), Expect = 5.820e-68
Identity = 104/119 (87.39%), Postives = 110/119 (92.44%), Query Frame = 0

Query:    1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 119
            GKTITL+VE SDTI+ VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +PSL ALA  +N EKM+CRKCYARLPPRA NCRKKKCGHTNQLRPKKKLK
Sbjct:   10 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKMICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 128

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
W7TN89_9STRA	1.350e-73	95.80	Ubiquitin n=2 Tax=Monodopsidaceae TaxID=425072 Rep...	[more]
A0A7S3H022_9STRA	9.800e-73	93.28	Hypothetical protein n=5 Tax=Eukaryota TaxID=2759 ...	[more]
B7G5H7_PHATC	1.050e-70	91.60	Ubiquitin extension protein 1/2 n=9 Tax=Bacillario...	[more]
A0A1Z5JFA3_FISSO	2.120e-70	90.76	Large subunit ribosomal protein L40e n=4 Tax=Stram...	[more]
A0A0G4EN71_VITBC	7.000e-70	90.76	Ubiquitin-like domain-containing protein n=1 Tax=V...	[more]
A0A448YZG3_9STRA	1.740e-69	89.08	Ubiquitin-like domain-containing protein n=6 Tax=B...	[more]
K0RS17_THAOC	1.900e-69	89.92	Ubiquitin-like domain-containing protein n=1 Tax=T...	[more]
W3XAR8_PESFW	2.170e-68	88.24	Ubiquitin-60S ribosomal protein L40 n=5 Tax=leotio...	[more]
RL40_NEUCR	2.880e-68	87.39	Ubiquitin-60S ribosomal protein L40 n=7 Tax=Eukary...	[more]
B6K0H2_SCHJY	5.820e-68	87.39	Ribosomal-ubiquitin fusion protein Ubi1 n=8 Tax=As...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019956	Ubiquitin	PRINTS	PR00348	UBIQUITIN	coord: 23..43 score: 95.05 coord: 44..65 score: 92.03 coord: 2..22 score: 74.21
IPR001975	Ribosomal protein L40e	SMART	SM01377	Ribosomal_L40e_3	coord: 68..119 e-value: 1.5E-29 score: 114.2
IPR001975	Ribosomal protein L40e	PFAM	PF01020	Ribosomal_L40e	coord: 70..118 e-value: 3.4E-28 score: 97.3
IPR000626	Ubiquitin domain	SMART	SM00213	ubq_7	coord: 1..63 e-value: 2.0E-25 score: 100.4
IPR000626	Ubiquitin domain	PFAM	PF00240	ubiquitin	coord: 1..65 e-value: 5.2E-30 score: 103.0
IPR000626	Ubiquitin domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..67 score: 27.338
IPR038587	Ribosomal protein L40e superfamily	GENE3D	2.20.28.70		coord: 69..119 e-value: 7.4E-28 score: 97.9
None	No IPR available	GENE3D	3.10.20.90		coord: 1..68 e-value: 3.5E-37 score: 128.7
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 1..118
None	No IPR available	PANTHER	PTHR10666:SF298		coord: 1..118
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 18..43
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 67..119
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..67

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig1622	contig	H-paniculata_contig1622:22138..23374 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1622.3582.1	mRNA_H-paniculata_contig1622.3582.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig1622 22138..23374 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig1622.3582.1 ID=prot_H-paniculata_contig1622.3582.1|Name=mRNA_H-paniculata_contig1622.3582.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
NIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKN
CRKKKCGHTNQLRPKKKLK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019956	Ubiquitin
IPR001975	Ribosomal_L40e
IPR000626	Ubiquitin_dom
IPR038587	L40e_sf
IPR019954	Ubiquitin_CS
IPR011332	Ribosomal_zn-bd
IPR029071	Ubiquitin-like_domsf