mRNA_H-paniculata_contig1622.3582.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: W7TN89_9STRA (Ubiquitin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN89_9STRA) HSP 1 Score: 226 bits (575), Expect = 1.350e-73 Identity = 114/119 (95.80%), Postives = 115/119 (96.64%), Query Frame = 1
Query: 1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 357
GKTITLDVEPSDTIE VKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFN EKM+CRKCYARLPPRAKNCRKKKCGHTN LR KKKLK
Sbjct: 10 GKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: A0A7S3H022_9STRA (Hypothetical protein n=5 Tax=Eukaryota TaxID=2759 RepID=A0A7S3H022_9STRA) HSP 1 Score: 222 bits (565), Expect = 9.800e-73 Identity = 111/119 (93.28%), Postives = 116/119 (97.48%), Query Frame = 1
Query: 1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 357
GKTITL+VEPSD+I+ VKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV+DPSLAALAKTFN EKM+CRKCYARLPPRAKNCRKKKCGHTNQLR KKKLK
Sbjct: 28 GKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVFDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKLK 146
BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: B7G5H7_PHATC (Ubiquitin extension protein 1/2 n=9 Tax=Bacillariophyta TaxID=2836 RepID=B7G5H7_PHATC) HSP 1 Score: 216 bits (550), Expect = 1.050e-70 Identity = 109/119 (91.60%), Postives = 112/119 (94.12%), Query Frame = 1
Query: 1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 357
GKTITLDVEPSDTI+ VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLA LAK FN +K VCRKCYARLPPRA NCRKKKCGHT+QLRPKKKLK
Sbjct: 10 GKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLALLAKGFNCDKAVCRKCYARLPPRATNCRKKKCGHTSQLRPKKKLK 128
BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: A0A1Z5JFA3_FISSO (Large subunit ribosomal protein L40e n=4 Tax=Stramenopiles TaxID=33634 RepID=A0A1Z5JFA3_FISSO) HSP 1 Score: 215 bits (548), Expect = 2.120e-70 Identity = 108/119 (90.76%), Postives = 112/119 (94.12%), Query Frame = 1
Query: 1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 357
GKTITLDVEPSDTI+ VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDP+LA LAK FN +K VCRKCYARLPPRA NCRKKKCGHT+QLRPKKKLK
Sbjct: 10 GKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPTLAMLAKKFNCDKAVCRKCYARLPPRATNCRKKKCGHTSQLRPKKKLK 128
BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: A0A0G4EN71_VITBC (Ubiquitin-like domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EN71_VITBC) HSP 1 Score: 216 bits (549), Expect = 7.000e-70 Identity = 108/119 (90.76%), Postives = 112/119 (94.12%), Query Frame = 1
Query: 1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 357
GKTITLDVEPSDTIE VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV +PSLA LA+ +N EKM+CRKCYARLPPRA NCRKKKCGHTNQLRPKKKLK
Sbjct: 57 GKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLAVLARKYNCEKMICRKCYARLPPRAVNCRKKKCGHTNQLRPKKKLK 175
BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: A0A448YZG3_9STRA (Ubiquitin-like domain-containing protein n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A448YZG3_9STRA) HSP 1 Score: 213 bits (542), Expect = 1.740e-69 Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 1
Query: 1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 357
GKTITLDVEPSDTI+ VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLA LA+ +N EK +CRKCYARLPP+A NCRKKKCGHT QLRPKKKLK
Sbjct: 10 GKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAMLARKYNCEKAICRKCYARLPPKASNCRKKKCGHTAQLRPKKKLK 128
BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: K0RS17_THAOC (Ubiquitin-like domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RS17_THAOC) HSP 1 Score: 215 bits (547), Expect = 1.900e-69 Identity = 107/119 (89.92%), Postives = 112/119 (94.12%), Query Frame = 1
Query: 1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 357
GKTITLDVEPSDTI+ VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLA LAK FN EK +CRKCYARLPP+A NCRKKKCGH++QLRPKKKLK
Sbjct: 66 GKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLALLAKKFNCEKQICRKCYARLPPKATNCRKKKCGHSSQLRPKKKLK 184
BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: W3XAR8_PESFW (Ubiquitin-60S ribosomal protein L40 n=5 Tax=leotiomyceta TaxID=716546 RepID=W3XAR8_PESFW) HSP 1 Score: 210 bits (535), Expect = 2.170e-68 Identity = 105/119 (88.24%), Postives = 110/119 (92.44%), Query Frame = 1
Query: 1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 357
GKTITL+VE SDTI+ VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +PSL ALA FN EKM+CRKCYARLPPRA NCRKKKCGHTNQLRPKKKLK
Sbjct: 12 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCEKMICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 130
BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: RL40_NEUCR (Ubiquitin-60S ribosomal protein L40 n=7 Tax=Eukaryota TaxID=2759 RepID=RL40_NEUCR) HSP 1 Score: 210 bits (534), Expect = 2.880e-68 Identity = 104/119 (87.39%), Postives = 111/119 (93.28%), Query Frame = 1
Query: 1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 357
GKTITL+VE SDTI+ VKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +PSL ALA FN +KM+CRKCYARLPPRA NCRK+KCGHTNQLRPKKKLK
Sbjct: 10 GKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 128
BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Match: B6K0H2_SCHJY (Ribosomal-ubiquitin fusion protein Ubi1 n=8 Tax=Ascomycota TaxID=4890 RepID=B6K0H2_SCHJY) HSP 1 Score: 209 bits (532), Expect = 5.820e-68 Identity = 104/119 (87.39%), Postives = 110/119 (92.44%), Query Frame = 1
Query: 1 GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 357
GKTITL+VE SDTI+ VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +PSL ALA +N EKM+CRKCYARLPPRA NCRKKKCGHTNQLRPKKKLK
Sbjct: 10 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKMICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 128 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1622.3582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1622.3582.1 >prot_H-paniculata_contig1622.3582.1 ID=prot_H-paniculata_contig1622.3582.1|Name=mRNA_H-paniculata_contig1622.3582.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp GKTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYback to top mRNA from alignment at H-paniculata_contig1622:22138..23374+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1622.3582.1 ID=mRNA_H-paniculata_contig1622.3582.1|Name=mRNA_H-paniculata_contig1622.3582.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1237bp|location=Sequence derived from alignment at H-paniculata_contig1622:22138..23374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1622:22138..23374+ >mRNA_H-paniculata_contig1622.3582.1 ID=mRNA_H-paniculata_contig1622.3582.1|Name=mRNA_H-paniculata_contig1622.3582.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig1622:22138..23374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |