prot_H-paniculata_contig14969.2950.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14969.2950.1
Unique Nameprot_H-paniculata_contig14969.2950.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length205
Homology
BLAST of mRNA_H-paniculata_contig14969.2950.1 vs. uniprot
Match: A0A438KER3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KER3_VITVI)

HSP 1 Score: 143 bits (361), Expect = 2.150e-39
Identity = 79/190 (41.58%), Postives = 125/190 (65.79%), Query Frame = 0
Query:   14 LLVAVYVDDLVITGRR-EKVDNFKHNINQRFRMKDLGSLSRVLGIKVRRDRPNGTITISQGSYIREVLKCTVLTRTRPDIAYAIHQAARRMEDPCREDFCTCKRIYCYLSTVSDLGITFSGTSNGHGLEGFVDPDWVENVDDRKSVTGYVFNLNGSAISSCSRKQQLVTWSSTEAEYVAAGEAGKETVYL 202
            +++ +YVDD++I G   EK++N    ++++F MKDLG+  ++LG+++ RD+ NGT+ +SQ  Y+++VL       +RPDI++A+    R M  P ++ +   K I  Y+    D  + F+G S    L+G+VD D+  ++D RKS TG+VF L G+AIS  S  Q++VT S+TEAEYVAA EAGKE ++L
Sbjct:   25 IILLLYVDDMLIVGFDIEKINNLNKQLSKQFAMKDLGATKQILGMRIIRDKTNGTLKLSQSEYVKKVL-------SRPDISHAVGVVNRFMSRPGKQHWEAVKWILRYVKGSLDTCLCFTGASLK--LQGYVDADFASDIDSRKSTTGFVFTLGGTAISWASNLQKIVTLSTTEAEYVAATEAGKEMIWL 205          
BLAST of mRNA_H-paniculata_contig14969.2950.1 vs. uniprot
Match: A0A438CLT8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CLT8_VITVI)

HSP 1 Score: 145 bits (366), Expect = 1.200e-36
Identity = 81/188 (43.09%), Postives = 125/188 (66.49%), Query Frame = 0
Query:   14 LLVAVYVDDLVITGRR-EKVDNFKHNINQRFRMKDLGSLSRVLGIKVRRDRPNGTITISQGSYIREVLKCTVLTRTRPDIAYAIHQAARRMEDPCREDFCTCKRIYCYLSTVSDLGITFSGTSNGHGLEGFVDPDWVENVDDRKSVTGYVFNLNGSAISSCSRKQQLVTWSSTEAEYVAAGEAGKETV 200
            +++ +YVDD++I G   EK++N K  ++++F MKDLG+  ++LG+++ RD+ NGT+ +SQ  Y+++VL       +RPDIA+A+   +R M  P ++ +   K I  YL    D  + F+G S    L+G+VD D+  ++D RKS TG+VF L G+AIS  S  Q++VT S+TEAEYVAA EAGKE +
Sbjct:  727 IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKVNGTLKLSQSEYVKKVL-------SRPDIAHAVGVVSRFMSRPGKQHWEAIKWILRYLKGSLDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMI 905          
BLAST of mRNA_H-paniculata_contig14969.2950.1 vs. uniprot
Match: A0A438HHN1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HHN1_VITVI)

HSP 1 Score: 133 bits (334), Expect = 3.240e-34
Identity = 83/237 (35.02%), Postives = 128/237 (54.01%), Query Frame = 0
Query:   14 LLVAVYVDDLVITGRR-EKVDNFKHNINQRFRMKDLGSLSRVLGIKVRRDRPNGTITISQGSYIREVLK-----------------------------------------------CTVLTRTRPDIAYAIHQAARRMEDPCREDFCTCKRIYCYLSTVSDLGITFSGTSNGHGLEGFVDPDWVENVDDRKSVTGYVFNLNGSAISSCSRKQQLVTWSSTEAEYVAAGEAGKETVYL 202
            +++ +YVDD++I G   EK++N K  ++++F MKDLG+  ++LG+++ RD+ NGT+ +SQ  Y+++VL                                                   +  TRPDIA+A+   +R M  P ++ +   K I  YL    D  + F+G S    L+G+VD D+  ++D RKS TG+VF L G+AIS  S  Q++VT S+TEAEYVAA EAGKE ++L
Sbjct:   41 IILLLYVDDMLIVGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWL 275          
BLAST of mRNA_H-paniculata_contig14969.2950.1 vs. uniprot
Match: A0A438GMI2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GMI2_VITVI)

HSP 1 Score: 131 bits (329), Expect = 4.950e-34
Identity = 74/173 (42.77%), Postives = 112/173 (64.74%), Query Frame = 0
Query:   30 EKVDNFKHNINQRFRMKDLGSLSRVLGIKVRRDRPNGTITISQGSYIREVLKCTVLTRTRPDIAYAIHQAARRMEDPCREDFCTCKRIYCYLSTVSDLGITFSGTSNGHGLEGFVDPDWVENVDDRKSVTGYVFNLNGSAISSCSRKQQLVTWSSTEAEYVAAGEAGKETVYL 202
            EK++N K  ++++F MKDLG+  ++LG+++ RD+ NGT+ +SQ  Y+++VL       +RPDIA+A+   +R M    ++ +   K I  YL    D  + F  TS    L+G+VD D+  ++D RKS TG+VF L G+AIS     Q++VT S+TEAEYVAA EAGKE ++L
Sbjct:   37 EKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSKYVKKVL-------SRPDIAHAVGVVSRFMSRAGKQHWEAVKWILRYLKGSLDTCLCF--TSASLKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWALNLQKIVTLSTTEAEYVAAIEAGKEMIWL 200          
BLAST of mRNA_H-paniculata_contig14969.2950.1 vs. uniprot
Match: A0A438EU98_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EU98_VITVI)

HSP 1 Score: 133 bits (334), Expect = 4.980e-34
Identity = 83/237 (35.02%), Postives = 128/237 (54.01%), Query Frame = 0
Query:   14 LLVAVYVDDLVITGRR-EKVDNFKHNINQRFRMKDLGSLSRVLGIKVRRDRPNGTITISQGSYIREVLK-----------------------------------------------CTVLTRTRPDIAYAIHQAARRMEDPCREDFCTCKRIYCYLSTVSDLGITFSGTSNGHGLEGFVDPDWVENVDDRKSVTGYVFNLNGSAISSCSRKQQLVTWSSTEAEYVAAGEAGKETVYL 202
            +++ +YVDD++I G   EK++N K  ++++F MKDLG+  ++LG+++ RD+ NGT+ +SQ  Y+++VL                                                   +  TRPDIA+A+   +R M  P ++ +   K I  YL    D  + F+G S    L+G+VD D+  ++D RKS TG+VF L G+AIS  S  Q++VT S+TEAEYVAA EAGKE ++L
Sbjct:   25 IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWL 259          
BLAST of mRNA_H-paniculata_contig14969.2950.1 vs. uniprot
Match: A0A438GMR2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GMR2_VITVI)

HSP 1 Score: 133 bits (334), Expect = 9.100e-34
Identity = 83/237 (35.02%), Postives = 128/237 (54.01%), Query Frame = 0
Query:   14 LLVAVYVDDLVITGRR-EKVDNFKHNINQRFRMKDLGSLSRVLGIKVRRDRPNGTITISQGSYIREVLK-----------------------------------------------CTVLTRTRPDIAYAIHQAARRMEDPCREDFCTCKRIYCYLSTVSDLGITFSGTSNGHGLEGFVDPDWVENVDDRKSVTGYVFNLNGSAISSCSRKQQLVTWSSTEAEYVAAGEAGKETVYL 202
            +++ +YVDD++I G   EK++N K  ++++F MKDLG+  ++LG+++ RD+ NGT+ +SQ  Y+++VL                                                   +  TRPDIA+A+   +R M  P ++ +   K I  YL    D  + F+G S    L+G+VD D+  ++D RKS TG+VF L G+AIS  S  Q++VT S+TEAEYVAA EAGKE ++L
Sbjct:   25 IILLLYVDDMLIVGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWL 259          
BLAST of mRNA_H-paniculata_contig14969.2950.1 vs. uniprot
Match: A0A7N2MM25_QUELO (CCHC-type domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2MM25_QUELO)

HSP 1 Score: 135 bits (341), Expect = 2.810e-33
Identity = 84/237 (35.44%), Postives = 129/237 (54.43%), Query Frame = 0
Query:   14 LLVAVYVDDLVITGRR-EKVDNFKHNINQRFRMKDLGSLSRVLGIKVRRDRPNGTITISQGSYIREVLK-----------------------------------------------CTVLTRTRPDIAYAIHQAARRMEDPCREDFCTCKRIYCYLSTVSDLGITFSGTSNGHGLEGFVDPDWVENVDDRKSVTGYVFNLNGSAISSCSRKQQLVTWSSTEAEYVAAGEAGKETVYL 202
            +++ +YVDD++I G   E+++N K  ++++F MKDLG+  ++LG+++ RD+ NGT+ +SQ  Y+++VL                                                   +  TRPDIA+A+   +R M  P ++ +   K I  YL   SD  + F+G S    L+G+VD D+  ++D RKS TG+VF L G+AIS  S  Q++VT SSTEAEYVAA EAGKE ++L
Sbjct:  932 IILLLYVDDMLIAGSSIEEINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEVERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSSDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWASNLQKIVTLSSTEAEYVAATEAGKEMIWL 1166          
BLAST of mRNA_H-paniculata_contig14969.2950.1 vs. uniprot
Match: A0A7N2LGJ4_QUELO (Uncharacterized protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2LGJ4_QUELO)

HSP 1 Score: 135 bits (341), Expect = 2.830e-33
Identity = 84/237 (35.44%), Postives = 129/237 (54.43%), Query Frame = 0
Query:   14 LLVAVYVDDLVITGRR-EKVDNFKHNINQRFRMKDLGSLSRVLGIKVRRDRPNGTITISQGSYIREVLK-----------------------------------------------CTVLTRTRPDIAYAIHQAARRMEDPCREDFCTCKRIYCYLSTVSDLGITFSGTSNGHGLEGFVDPDWVENVDDRKSVTGYVFNLNGSAISSCSRKQQLVTWSSTEAEYVAAGEAGKETVYL 202
            +++ +YVDD++I G   E+++N K  ++++F MKDLG+  ++LG+++ RD+ NGT+ +SQ  Y+++VL                                                   +  TRPDIA+A+   +R M  P ++ +   K I  YL   SD  + F+G S    L+G+VD D+  ++D RKS TG+VF L G+AIS  S  Q++VT SSTEAEYVAA EAGKE ++L
Sbjct:  974 IILLLYVDDMLIAGSSIEEINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEVERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSSDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWASNLQKIVTLSSTEAEYVAATEAGKEMIWL 1208          
BLAST of mRNA_H-paniculata_contig14969.2950.1 vs. uniprot
Match: A0A7N2KSK9_QUELO (Uncharacterized protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2KSK9_QUELO)

HSP 1 Score: 135 bits (341), Expect = 2.830e-33
Identity = 84/237 (35.44%), Postives = 129/237 (54.43%), Query Frame = 0
Query:   14 LLVAVYVDDLVITGRR-EKVDNFKHNINQRFRMKDLGSLSRVLGIKVRRDRPNGTITISQGSYIREVLK-----------------------------------------------CTVLTRTRPDIAYAIHQAARRMEDPCREDFCTCKRIYCYLSTVSDLGITFSGTSNGHGLEGFVDPDWVENVDDRKSVTGYVFNLNGSAISSCSRKQQLVTWSSTEAEYVAAGEAGKETVYL 202
            +++ +YVDD++I G   E+++N K  ++++F MKDLG+  ++LG+++ RD+ NGT+ +SQ  Y+++VL                                                   +  TRPDIA+A+   +R M  P ++ +   K I  YL   SD  + F+G S    L+G+VD D+  ++D RKS TG+VF L G+AIS  S  Q++VT SSTEAEYVAA EAGKE ++L
Sbjct:  974 IILLLYVDDMLIAGSSIEEINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEVEMDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSSDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWASNLQKIVTLSSTEAEYVAATEAGKEMIWL 1208          
BLAST of mRNA_H-paniculata_contig14969.2950.1 vs. uniprot
Match: A0A7N2LGG4_QUELO (Uncharacterized protein n=2 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2LGG4_QUELO)

HSP 1 Score: 135 bits (341), Expect = 2.830e-33
Identity = 84/237 (35.44%), Postives = 129/237 (54.43%), Query Frame = 0
Query:   14 LLVAVYVDDLVITGRR-EKVDNFKHNINQRFRMKDLGSLSRVLGIKVRRDRPNGTITISQGSYIREVLK-----------------------------------------------CTVLTRTRPDIAYAIHQAARRMEDPCREDFCTCKRIYCYLSTVSDLGITFSGTSNGHGLEGFVDPDWVENVDDRKSVTGYVFNLNGSAISSCSRKQQLVTWSSTEAEYVAAGEAGKETVYL 202
            +++ +YVDD++I G   E+++N K  ++++F MKDLG+  ++LG+++ RD+ NGT+ +SQ  Y+++VL                                                   +  TRPDIA+A+   +R M  P ++ +   K I  YL   SD  + F+G S    L+G+VD D+  ++D RKS TG+VF L G+AIS  S  Q++VT SSTEAEYVAA EAGKE ++L
Sbjct:  974 IILLLYVDDMLIAGSSIEEINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEVERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSSDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWASNLQKIVTLSSTEAEYVAATEAGKEMIWL 1208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14969.2950.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438KER3_VITVI2.150e-3941.58Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CLT8_VITVI1.200e-3643.09Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HHN1_VITVI3.240e-3435.02Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GMI2_VITVI4.950e-3442.77Retrovirus-related Pol polyprotein from transposon... [more]
A0A438EU98_VITVI4.980e-3435.02Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GMR2_VITVI9.100e-3435.02Retrovirus-related Pol polyprotein from transposon... [more]
A0A7N2MM25_QUELO2.810e-3335.44CCHC-type domain-containing protein n=1 Tax=Quercu... [more]
A0A7N2LGJ4_QUELO2.830e-3335.44Uncharacterized protein n=1 Tax=Quercus lobata Tax... [more]
A0A7N2KSK9_QUELO2.830e-3335.44Uncharacterized protein n=1 Tax=Quercus lobata Tax... [more]
A0A7N2LGG4_QUELO2.830e-3335.44Uncharacterized protein n=2 Tax=Quercus lobata Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 4..89
e-value: 2.2E-16
score: 60.3
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 84..203
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 84..203

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14969contigH-paniculata_contig14969:4037..4850 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14969.2950.1mRNA_H-paniculata_contig14969.2950.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14969 3782..5263 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14969.2950.1 ID=prot_H-paniculata_contig14969.2950.1|Name=mRNA_H-paniculata_contig14969.2950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
MLVLYRDDGGEADLLVAVYVDDLVITGRREKVDNFKHNINQRFRMKDLGS
LSRVLGIKVRRDRPNGTITISQGSYIREVLKCTVLTRTRPDIAYAIHQAA
RRMEDPCREDFCTCKRIYCYLSTVSDLGITFSGTSNGHGLEGFVDPDWVE
NVDDRKSVTGYVFNLNGSAISSCSRKQQLVTWSSTEAEYVAAGEAGKETV
YLRD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like