prot_H-paniculata_contig1487.2903.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1487.2903.1
Unique Nameprot_H-paniculata_contig1487.2903.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length522
Homology
BLAST of mRNA_H-paniculata_contig1487.2903.1 vs. uniprot
Match: A0A6H5L8Z2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Z2_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 4.870e-44
Identity = 125/333 (37.54%), Postives = 156/333 (46.85%), Query Frame = 0
Query:   28 SFIPSGFECVAHPVFFQTQPAQATSSAEERRHSHRRLRFQPHQQHRAAASVANGVTVNASNGGGTPTGRSVMEPQHHDFVTGSSLVSSELFFETRHSTQGSNSPFCGDEGKGTSSIGSGERQGAGGSAREVDRVCPICLSKFEEPVTLTSCLHSFCHTCILGWYEHTVAVALARGGVSILRE----------------------TAGSRRRGNEEAIPAPYRCPLCQVPGPYFLAVQTNARSTPLSAGGGVTFHNRKANDSDMHTPKLKFKLLGARTVLGGGREAGQEVAEAADVVGVAEVSNAGDGNGSA----VVGYPT--MEELRAAVRT 332
            + +PSGFECVAHPVFF+   +  +S               P   + AA S  N  T         PT  +  + +                     + +G +      +  G +SI SG         REV  VCPICL +FEEPVTLTSCLH+FCHTCILGWYEHTVAVAL+RG +S                          + G+R  G +   P PYRCPLCQVPGP+FLAV+   RS+            R+AN       KLKF+LLGA TV GGG    +         GVA   +AG G G        GYP+  M +LRAAV+T
Sbjct:   17 TLVPSGFECVAHPVFFRNDVSDGSSDYAA-----------PPTSNTAARSAMNSTTTI------DPTAAAAWDVE---------------------ALEGGDDSGRDTDAPGNASIISGR------GGREVHSVCPICLGRFEEPVTLTSCLHTFCHTCILGWYEHTVAVALSRGNLSAFHPERGNSNTWRGGSSNDISGSSGTSTGNRDGGRKRPAPVPYRCPLCQVPGPFFLAVE-RPRSSSFKG-------KREANPKSSKPSKLKFRLLGAPTVFGGGGPVSR---------GVAVDEHAGGGRGKGGDGGTAGYPSPSMADLRAAVQT 288          
BLAST of mRNA_H-paniculata_contig1487.2903.1 vs. uniprot
Match: D8LPV3_ECTSI (zf-RING_UBOX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV3_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 7.000e-9
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0
Query:  151 AGGSAREVDRVCPICLSKFEEPVTLTSCLHSFCHT 185
            +G   REV  VCPICL KFEEPVTLTSCLH+FCHT
Sbjct:   40 SGRGGREVHSVCPICLGKFEEPVTLTSCLHTFCHT 74          
BLAST of mRNA_H-paniculata_contig1487.2903.1 vs. uniprot
Match: A0A669QXE3_PHACC (Uncharacterized protein n=3 Tax=Phasianinae TaxID=9072 RepID=A0A669QXE3_PHACC)

HSP 1 Score: 60.5 bits (145), Expect = 4.960e-6
Identity = 43/121 (35.54%), Postives = 52/121 (42.98%), Query Frame = 0
Query:  154 SAREVDRVCPICLSKFEEPVTLTSCLHSFCHTCILGWYEHTVAVALARGGVSILRETAGSRRRG--NEEAIPAPYRCPLCQ----VP--GPYFLAVQTNA-------RSTPLSAGGGVTFH 259
            S  E    C +CLS FEEPVTL  C H+FC  C+L       A  L +     LR   G + +G   E+A  A   CPLC+    +P  G   L V T         RS    AGG    H
Sbjct:   87 SQMEASLTCAVCLSLFEEPVTLPLCSHNFCRGCVLECLASAEAARLQQRSHGQLRGARGGQGQGADGEDAAGARVSCPLCRKLCPLPRGGAAALPVNTTLAEVVRLYRSNAARAGGSCQKH 207          
BLAST of mRNA_H-paniculata_contig1487.2903.1 vs. uniprot
Match: A0A672U625_STRHB (RING-type domain-containing protein n=1 Tax=Strigops habroptila TaxID=2489341 RepID=A0A672U625_STRHB)

HSP 1 Score: 52.8 bits (125), Expect = 9.590e-5
Identity = 27/69 (39.13%), Postives = 33/69 (47.83%), Query Frame = 0
Query:  139 GTSSIGSGERQGAGGSAREVDRVCPICLSKFEEPVTLTSCLHSFCHTCILGWYEHTVAVALARGGVSIL 207
            G  + G  E   +G    E    C +CLS FEEPVTL  C H+FC  C+L          L RGG + L
Sbjct:    5 GRRAAGRAESAWSGRLRMEASLTCAVCLSLFEEPVTLPLCSHNFCRDCVLECLASAELCPLPRGGAAAL 73          
BLAST of mRNA_H-paniculata_contig1487.2903.1 vs. uniprot
Match: A0A8C5WUD6_LATLA (Uncharacterized protein n=1 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5WUD6_LATLA)

HSP 1 Score: 55.8 bits (133), Expect = 9.890e-5
Identity = 30/89 (33.71%), Postives = 39/89 (43.82%), Query Frame = 0
Query:  157 EVDRVCPICLSKFEEPVTLTSCLHSFCHTCILGWYEHTVAVALARGGVSILRETAGSR-----------RRGNEEAIPAPYRCPLCQVP 234
            E    C +CLS FE+PVTL +C H+FC  C++        VAL     S  R +  SR           R G    +P P    LC +P
Sbjct:    2 EASLTCAVCLSLFEDPVTLPACSHNFCRHCVVECLSQAAGVALPSSSSSASRPSPRSRDSLQETPGRPSRDGGSLILPCPLCRKLCSLP 90          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1487.2903.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L8Z2_9PHAE4.870e-4437.54RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LPV3_ECTSI7.000e-977.14zf-RING_UBOX domain-containing protein n=1 Tax=Ect... [more]
A0A669QXE3_PHACC4.960e-635.54Uncharacterized protein n=3 Tax=Phasianinae TaxID=... [more]
A0A672U625_STRHB9.590e-539.13RING-type domain-containing protein n=1 Tax=Strigo... [more]
A0A8C5WUD6_LATLA9.890e-533.71Uncharacterized protein n=1 Tax=Laticauda laticaud... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 497..517
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 160..235
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 162..231
e-value: 9.2E-9
score: 45.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 162..232
score: 11.014
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 152..268
e-value: 5.5E-13
score: 50.7
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 162..190
e-value: 4.2E-9
score: 36.3
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 178..187

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1487contigH-paniculata_contig1487:22393..25309 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1487.2903.1mRNA_H-paniculata_contig1487.2903.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1487 22241..25905 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1487.2903.1 ID=prot_H-paniculata_contig1487.2903.1|Name=mRNA_H-paniculata_contig1487.2903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=522bp
MATPQIRRQQQHRQQQLPPRNTTSSGQSFIPSGFECVAHPVFFQTQPAQA
TSSAEERRHSHRRLRFQPHQQHRAAASVANGVTVNASNGGGTPTGRSVME
PQHHDFVTGSSLVSSELFFETRHSTQGSNSPFCGDEGKGTSSIGSGERQG
AGGSAREVDRVCPICLSKFEEPVTLTSCLHSFCHTCILGWYEHTVAVALA
RGGVSILRETAGSRRRGNEEAIPAPYRCPLCQVPGPYFLAVQTNARSTPL
SAGGGVTFHNRKANDSDMHTPKLKFKLLGARTVLGGGREAGQEVAEAADV
VGVAEVSNAGDGNGSAVVGYPTMEELRAAVRTQLALKAAMTMLEADEEDA
SGTTRERATDEARDNCANLEGRRERSWHRRRGLHSKDQADEESIRGRSSR
RGSEKEGGEAKHLRSSPTSSKIDVPAVSPTQHDSDSDGRSERNERRKKKR
GDGRRSDEDDERCTHDRGRRERGKGDASGRIRIGDKAASALLWEPGSMSA
EDALRAVETMLEREKEKLLPS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR027370Znf-RING_LisH
IPR017907Znf_RING_CS