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Homology
BLAST of mRNA_H-paniculata_contig1487.2903.1 vs. uniprot
Match: A0A6H5L8Z2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Z2_9PHAE) HSP 1 Score: 174 bits (440), Expect = 2.030e-43 Identity = 125/333 (37.54%), Postives = 156/333 (46.85%), Query Frame = 2
Query: 185 SFIPSGFECVAHPVFFQTQPAQATSSAEERRHSHRRLRFQPHQQHRAAASVANGVTVNASNGGGTPTGRSVMEPQHHDFVTGSSLVSSELFFETRHSTQGSNSPFCGDEGKGTSSIGSGERQGAGGSAREVDRVCPICLSKFEEPVTLTSCLHSFCHTCILGWYEHTVAVALARGGVSILRE----------------------TAGSRRRGNEEAIPAPYRCPLCQVPGPYFLAVQTNARSTPLSAGGGVTFHNRKANDSDMHTPKLKFKLLGARTVLGGGREAGQEVAEAADVVGVAEVSNAGDGNGSA----VVGYPT--MEELRAAVRT 1099
+ +PSGFECVAHPVFF+ + +S P + AA S N T PT + + + + +G + + G +SI SG REV VCPICL +FEEPVTLTSCLH+FCHTCILGWYEHTVAVAL+RG +S + G+R G + P PYRCPLCQVPGP+FLAV+ RS+ R+AN KLKF+LLGA TV GGG + GVA +AG G G GYP+ M +LRAAV+T
Sbjct: 17 TLVPSGFECVAHPVFFRNDVSDGSSDYAA-----------PPTSNTAARSAMNSTTTI------DPTAAAAWDVE---------------------ALEGGDDSGRDTDAPGNASIISGR------GGREVHSVCPICLGRFEEPVTLTSCLHTFCHTCILGWYEHTVAVALSRGNLSAFHPERGNSNTWRGGSSNDISGSSGTSTGNRDGGRKRPAPVPYRCPLCQVPGPFFLAVE-RPRSSSFKG-------KREANPKSSKPSKLKFRLLGAPTVFGGGGPVSR---------GVAVDEHAGGGRGKGGDGGTAGYPSPSMADLRAAVQT 288
BLAST of mRNA_H-paniculata_contig1487.2903.1 vs. uniprot
Match: D8LPV3_ECTSI (zf-RING_UBOX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV3_ECTSI) HSP 1 Score: 63.9 bits (154), Expect = 8.260e-9 Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 2
Query: 554 AGGSAREVDRVCPICLSKFEEPVTLTSCLHSFCHT 658
+G REV VCPICL KFEEPVTLTSCLH+FCHT
Sbjct: 40 SGRGGREVHSVCPICLGKFEEPVTLTSCLHTFCHT 74
BLAST of mRNA_H-paniculata_contig1487.2903.1 vs. uniprot
Match: A0A669QXE3_PHACC (Uncharacterized protein n=3 Tax=Phasianinae TaxID=9072 RepID=A0A669QXE3_PHACC) HSP 1 Score: 60.5 bits (145), Expect = 6.380e-6 Identity = 43/121 (35.54%), Postives = 52/121 (42.98%), Query Frame = 2
Query: 563 SAREVDRVCPICLSKFEEPVTLTSCLHSFCHTCILGWYEHTVAVALARGGVSILRETAGSRRRG--NEEAIPAPYRCPLCQ----VP--GPYFLAVQTNA-------RSTPLSAGGGVTFH 880
S E C +CLS FEEPVTL C H+FC C+L A L + LR G + +G E+A A CPLC+ +P G L V T RS AGG H
Sbjct: 87 SQMEASLTCAVCLSLFEEPVTLPLCSHNFCRGCVLECLASAEAARLQQRSHGQLRGARGGQGQGADGEDAAGARVSCPLCRKLCPLPRGGAAALPVNTTLAEVVRLYRSNAARAGGSCQKH 207
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1821 |
| Cds size | 1566 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1487.2903.1 >prot_H-paniculata_contig1487.2903.1 ID=prot_H-paniculata_contig1487.2903.1|Name=mRNA_H-paniculata_contig1487.2903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=522bp
MATPQIRRQQQHRQQQLPPRNTTSSGQSFIPSGFECVAHPVFFQTQPAQA
TSSAEERRHSHRRLRFQPHQQHRAAASVANGVTVNASNGGGTPTGRSVME
PQHHDFVTGSSLVSSELFFETRHSTQGSNSPFCGDEGKGTSSIGSGERQG
AGGSAREVDRVCPICLSKFEEPVTLTSCLHSFCHTCILGWYEHTVAVALA
RGGVSILRETAGSRRRGNEEAIPAPYRCPLCQVPGPYFLAVQTNARSTPL
SAGGGVTFHNRKANDSDMHTPKLKFKLLGARTVLGGGREAGQEVAEAADV
VGVAEVSNAGDGNGSAVVGYPTMEELRAAVRTQLALKAAMTMLEADEEDA
SGTTRERATDEARDNCANLEGRRERSWHRRRGLHSKDQADEESIRGRSSR
RGSEKEGGEAKHLRSSPTSSKIDVPAVSPTQHDSDSDGRSERNERRKKKR
GDGRRSDEDDERCTHDRGRRERGKGDASGRIRIGDKAASALLWEPGSMSA
EDALRAVETMLEREKEKLLPS* back to topmRNA from alignment at H-paniculata_contig1487:22241..25905- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1487.2903.1 ID=mRNA_H-paniculata_contig1487.2903.1|Name=mRNA_H-paniculata_contig1487.2903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3665bp|location=Sequence derived from alignment at H-paniculata_contig1487:22241..25905- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACTGTGGTAGCCCCTCTCCTGAACCGGGTGTCTCCGGACCGTATGGTA
CCTTCGAGAAGTACAAGGTATGATATGCACTTGATGTGTTGGTGCCTTGT
TGTCTTGCTGAACTGCATCGCTTCTACAGACTCGTTCACGTGTACCAACA
TACGGTACCACTCTACTGTTGTTGCACTTGATGTTGATTTTTGCCCTTTC
TCCGCGCCGATCTCTTCGGTATAGCCGTGTTTGCCTTCCTTGCTGCGAGG
TGCACCATTCTTCATTATTCCTGTCGAGAGCTACGGCCTCTCGTTGTACT
GTACTTATTATGATCAGGTTCTGGGGTGCTGCGTTGATATACATTGTGAT
GAATTGCTGCCGTCATGACTTCAGCAGTCATATCCATAGTAGAGATCAAA
TTCTCTTTCCCTACAGTTTTGGTGCAATAATATACTGTGCCTCTCTTGGC
CGTTTTGCAGACTGTTTTATTTATAGTGCATCTCGATCGTTCTTCTAACT
TCTTCCCCTGCTTGCGTCGTGTTGTTCTTATGCCTATCTGGCGGTATTTA
AAACAACTAGGTCTCAGTACCATCAACGACGCCCAGAAATTCTTAAATGG
CGACACCTCAAATCCGGCGACAGCAGCAGCACAGGCAACAGCAGCTTCCA
CCGAGAAACACAACTTCCTCGGGTCAAAGCTTCATACCCAGCGGATTCGA
GTGCGTAGCGCATCCCGTGTTCTTCCAAACTCAGCCAGCACAAGCAACAT
CAAGCGCGGAAGAACGACGACATTCCCACCGCCGGCTGCGTTTTCAGCCT
CATCAACAACATCGCGCTGCTGCGAGTGTAGCGAATGGTGTTACTGTCAA
TGCCAGCAACGGTGGTGGCACACCGACTGGGAGGTCTGTAATGGAACCCC
AACACCATGATTTTGTTACAGGAAGCAGTTTGGTCAGCAGCGAACTGTTT
TTTGAGACACGTCACAGTACCCAGGGGAGTAATTCGCCTTTTTGCGGCGA
CGAAGGGAAGGGAACTAGTAGCATTGGATCTGGAGAGAGACAAGGGGCTG
GAGGGAGTGCAAGGGAGGTTGATCGTGTGTGTCCCATTTGCTTGAGCAAA
TTTGAAGAGCCCGTGACCTTGACATCATGCCTTCACAGCTTCTGTCATAC
CTGGTGAGACATGGTCCGCAATGATATACTCGTACAAGACGACGAATTAT
TTGTCGTTCGCGTACATTGATTCTACATGACCTTTGGTGGAAGCTCACCA
CCCTCCACCTTGTTCAAATCTAGCACGACAGCTTAGGGGTAGGAATCAAA
GTGCGAGCTTCCCGCGCCTGGTACGTAGGTCTTGTGTGGCACGAGTATAG
TCGTGACTCTGACGACAATATTCCATTCATGTCTACTAATATCAATAGCA
GCGAGACCCTGTCGTTCTGGTACTGTCAGAAGCACGTATATGCTAGCCGA
ATATGCGAATGATAACAGTAGTAGTTTACTGGGTTAGTGCTCTGTACTTC
GCTGACTGCAGTAGACCGTCCGTGACTTTTGCAGTTAGGTACTTGGTAGT
TTGTGGATCTACATATCTACCACTAACCGTATTTTGACAGTGCGCAAACA
AGCTTTGAGGCCTAGGCTGACAGACGAGATACATCTTATTGGAGTCATTG
CGATGGTCGATTCATCGCACCAATGAGCACACCCGCTTTTTTGGTCCAGG
GGTAATCACTCCTAGGACAGACTACATATTTCACCCCTTTAGGGGATAAT
TAAAAATGTACGTTTCGCGGAAAACCACCACACGGCTGGCTCAAATATCC
CCTATAGATAACACCGATAAACGCAAAACACAGCAGTAAGGTTGATTTAG
TCAAGAGTTTTAGATAAGTCACTGACTAGCTCCAAAACAGATTCCTGTAC
CTCTTTCGTAGGACGACGCAATAGTGCCTGGCTGGTTCAGTGTTCTCCGT
TTGCTCCATGAGGAAGGACACTGCAGGCATATGAGGGGTGTGCCGTTATG
ACTGAACCTCCTAGTTGTTATTCCCCCGCCGGTAACACCGAGTCCAAGAG
TCAACAGTCCGCAATCTTGGCGCTGTTGTCGTGAAAAAGCAACCTACAAC
AGTATGCGATATGATGGACCAGGTAGGGACTTTCTTGCAAAACCCAAGGA
CGTGGCTGCTTGTCCTGTCGATGAGTTTCCTCGAGGAACTTTCAGCAACA
CTTAGTTCAATATGATGTATTAGAAATACAGATATTAATACTGTCCTTTT
GTGGAATGTTGCGGTTACACCTCCACTTGAAGAATATAGCCCCAATACGT
CTACAATTACGCCAACTCTTGCCCCTCGGCCTGCTTCATGTTGTCATCGC
GGGATGTGTGAATACCATGAGTCACATCTAAGACTTATTGTCTGATTCCA
GCCGCTGTATACCCCCCCCCCACACCCTCCGCCTCTCCTTCCTCACTGCC
AATCACGGTTGATGACACATCATCAACCCTCGCAATCGCCTCAACCCTTT
ACAGCATATTAGGGTGGTACGAGCACACGGTGGCTGTCGCTCTCGCTCGC
GGTGGCGTGTCAATCTTGCGAGAAACAGCAGGTTCACGACGACGGGGGAA
CGAAGAGGCTATCCCTGCGCCCTACCGTTGCCCATTGTGCCAAGTGCCGG
GCCCTTACTTTTTGGCCGTTCAAACGAATGCTCGCTCGACGCCCCTCTCC
GCGGGCGGGGGCGTAACATTTCACAACAGGAAAGCCAACGATAGCGACAT
GCATACGCCCAAGCTTAAGTTTAAGCTACTGGGGGCTAGGACGGTGTTGG
GGGGAGGAAGGGAGGCAGGACAGGAGGTGGCCGAAGCTGCAGATGTGGTC
GGGGTAGCCGAGGTTAGCAATGCTGGCGATGGCAATGGTTCAGCTGTGGT
TGGGTACCCTACAATGGAGGAGTTGAGGGCGGCGGTGCGGACGCAGCTCG
CGCTGAAGGCAGCAATGACGATGTTAGAGGCAGACGAAGAAGATGCGAGC
GGTACGACCCGTGAAAGAGCCACCGACGAAGCTCGCGATAATTGTGCCAA
TCTTGAGGGCAGACGTGAGCGTAGTTGGCATCGTAGGCGTGGGCTGCACT
CAAAAGACCAAGCTGACGAGGAATCTATCAGGGGTAGGTCAAGTCGCCGA
GGTAGCGAAAAGGAGGGGGGGGAAGCGAAACATCTCCGATCATCGCCAAC
TTCTTCGAAGATAGACGTACCAGCAGTGTCTCCAACGCAACATGACAGTG
ATAGTGATGGGCGCAGCGAGAGGAATGAAAGACGAAAGAAAAAACGGGGC
GACGGGCGGCGGAGTGACGAAGACGACGAACGATGTACACATGACAGGGG
AAGGCGAGAGAGGGGCAAAGGCGATGCCTCTGGCAGAATTCGTATTGGTG
ATAAGGCAGCCAGTGCGCTTCTTTGGGAGCCTGGTTCTATGTCGGCCGAG
GATGCACTACGAGCCGTTGAGACCATGTTAGAGCGGGAGAAGGAAAAACT
CCTTCCATCGTAATTTAGCGAGCGTGGAGTGTGAATGTGAAAGACCTGCC
GCCACAGCAGGCACTCTGCTTTTTACTTGGGTGACAAATGACCTTCCCAC
GCGGATATTGCAAAATATGGAATCAAAACTGTTAGCCGAACGAGTTGCGC
GTGCATGCTGTGTCC back to topCoding sequence (CDS) from alignment at H-paniculata_contig1487:22241..25905- >mRNA_H-paniculata_contig1487.2903.1 ID=mRNA_H-paniculata_contig1487.2903.1|Name=mRNA_H-paniculata_contig1487.2903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3132bp|location=Sequence derived from alignment at H-paniculata_contig1487:22241..25905- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACACCTCAAATCCGGCGACAGCAGCAGCACAGGCAACAGCAGCT
TCCACCGAGAAACACAACTTCCTCGGGTCAAAGCTTCATACCCAGCGGAT
TCGAGTGCGTAGCGCATCCCGTGTTCTTCCAAACTCAGCCAGCACAAGCA
ACATCAAGCGCGGAAGAACGACGACATTCCCACCGCCGGCTGCGTTTTCA
GCCTCATCAACAACATCGCGCTGCTGCGAGTGTAGCGAATGGTGTTACTG
TCAATGCCAGCAACGGTGGTGGCACACCGACTGGGAGGTCTGTAATGGAA
CCCCAACACCATGATTTTGTTACAGGAAGCAGTTTGGTCAGCAGCGAACT
GTTTTTTGAGACACGTCACAGTACCCAGGGGAGTAATTCGCCTTTTTGCG
GCGACGAAGGGAAGGGAACTAGTAGCATTGGATCTGGAGAGAGACAAGGG
GCTGGAGGGAGTGCAAGGGAGGTTGATCGTGTGTGTCCCATTTGCTTGAG
CAAATTTGAAGAGCCCGTGACCTTGACATCATGCCTTCACAGCTTCTGTC
ATACCTGATGGCGACACCTCAAATCCGGCGACAGCAGCAGCACAGGCAAC
AGCAGCTTCCACCGAGAAACACAACTTCCTCGGGTCAAAGCTTCATACCC
AGCGGATTCGAGTGCGTAGCGCATCCCGTGTTCTTCCAAACTCAGCCAGC
ACAAGCAACATCAAGCGCGGAAGAACGACGACATTCCCACCGCCGGCTGC
GTTTTCAGCCTCATCAACAACATCGCGCTGCTGCGAGTGTAGCGAATGGT
GTTACTGTCAATGCCAGCAACGGTGGTGGCACACCGACTGGGAGGTCTGT
AATGGAACCCCAACACCATGATTTTGTTACAGGAAGCAGTTTGGTCAGCA
GCGAACTGTTTTTTGAGACACGTCACAGTACCCAGGGGAGTAATTCGCCT
TTTTGCGGCGACGAAGGGAAGGGAACTAGTAGCATTGGATCTGGAGAGAG
ACAAGGGGCTGGAGGGAGTGCAAGGGAGGTTGATCGTGTGTGTCCCATTT
GCTTGAGCAAATTTGAAGAGCCCGTGACCTTGACATCATGCCTTCACAGC
TTCTGTCATACCTGCATATTAGGGTGGTACGAGCACACGGTGGCTGTCGC
TCTCGCTCGCGGTGGCGTGTCAATCTTGCGAGAAACAGCAGGTTCACGAC
GACGGGGGAACGAAGAGGCTATCCCTGCGCCCTACCGTTGCCCATTGTGC
CAAGTGCCGGGCCCTTACTTTTTGGCCGTTCAAACGAATGCTCGCTCGAC
GCCCCTCTCCGCGGGCGGGGGCGTAACATTTCACAACAGGAAAGCCAACG
ATAGCGACATGCATACGCCCAAGCTTAAGTTTAAGCTACTGGGGGCTAGG
ACGGTGTTGGGGGGAGGAAGGGAGGCAGGACAGGAGGTGGCCGAAGCTGC
AGATGTGGTCGGGGTAGCCGAGGTTAGCAATGCTGGCGATGGCAATGGTT
CAGCTGTGGTTGGGTACCCTACAATGGAGGAGTTGAGGGCGGCGGTGCGG
ACGCAGCTCGCGCTGAAGGCAGCAATGACGATGTTAGAGGCAGACGAAGA
AGATGCGAGCGGTACGACCCGTGAAAGAGCCACCGACGAAGCTCGCGATA
ATTGTGCCAATCTTGAGGGCAGACGTGAGCGTAGTTGGCATCGTAGGCGT
GGGCTGCACTCAAAAGACCAAGCTGACGAGGAATCTATCAGGGGTAGGTC
AAGTCGCCGAGGTAGCGAAAAGGAGGGGGGGGAAGCGAAACATCTCCGAT
CATCGCCAACTTCTTCGAAGATAGACGTACCAGCAGTGTCTCCAACGCAA
CATGACAGTGATAGTGATGGGCGCAGCGAGAGGAATGAAAGACGAAAGAA
AAAACGGGGCGACGGGCGGCGGAGTGACGAAGACGACGAACGATGTACAC
ATGACAGGGGAAGGCGAGAGAGGGGCAAAGGCGATGCCTCTGGCAGAATT
CGTATTGGTGATAAGGCAGCCAGTGCGCTTCTTTGGGAGCCTGGTTCTAT
GTCGGCCGAGGATGCACTACGAGCCGTTGAGACCATGTTAGAGCGGGAGA
AGGAAAAACTCCTTCCATCGTAACATATTAGGGTGGTACGAGCACACGGT
GGCTGTCGCTCTCGCTCGCGGTGGCGTGTCAATCTTGCGAGAAACAGCAG
GTTCACGACGACGGGGGAACGAAGAGGCTATCCCTGCGCCCTACCGTTGC
CCATTGTGCCAAGTGCCGGGCCCTTACTTTTTGGCCGTTCAAACGAATGC
TCGCTCGACGCCCCTCTCCGCGGGCGGGGGCGTAACATTTCACAACAGGA
AAGCCAACGATAGCGACATGCATACGCCCAAGCTTAAGTTTAAGCTACTG
GGGGCTAGGACGGTGTTGGGGGGAGGAAGGGAGGCAGGACAGGAGGTGGC
CGAAGCTGCAGATGTGGTCGGGGTAGCCGAGGTTAGCAATGCTGGCGATG
GCAATGGTTCAGCTGTGGTTGGGTACCCTACAATGGAGGAGTTGAGGGCG
GCGGTGCGGACGCAGCTCGCGCTGAAGGCAGCAATGACGATGTTAGAGGC
AGACGAAGAAGATGCGAGCGGTACGACCCGTGAAAGAGCCACCGACGAAG
CTCGCGATAATTGTGCCAATCTTGAGGGCAGACGTGAGCGTAGTTGGCAT
CGTAGGCGTGGGCTGCACTCAAAAGACCAAGCTGACGAGGAATCTATCAG
GGGTAGGTCAAGTCGCCGAGGTAGCGAAAAGGAGGGGGGGGAAGCGAAAC
ATCTCCGATCATCGCCAACTTCTTCGAAGATAGACGTACCAGCAGTGTCT
CCAACGCAACATGACAGTGATAGTGATGGGCGCAGCGAGAGGAATGAAAG
ACGAAAGAAAAAACGGGGCGACGGGCGGCGGAGTGACGAAGACGACGAAC
GATGTACACATGACAGGGGAAGGCGAGAGAGGGGCAAAGGCGATGCCTCT
GGCAGAATTCGTATTGGTGATAAGGCAGCCAGTGCGCTTCTTTGGGAGCC
TGGTTCTATGTCGGCCGAGGATGCACTACGAGCCGTTGAGACCATGTTAG
AGCGGGAGAAGGAAAAACTCCTTCCATCGTAA back to top
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