prot_H-paniculata_contig14172.2534.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14172.2534.1
Unique Nameprot_H-paniculata_contig14172.2534.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length105
Homology
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BLAST of mRNA_H-paniculata_contig14172.2534.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.790e-9
Identity = 29/75 (38.67%), Postives = 50/75 (66.67%), Query Frame = 0 
Query:    2 WDGLIAEYQNSSKQRRRILIRQLDGMTMKQDQDPDVFLAHVFQLRDELAHMGEEISEERLTDIVLEGLTDDYEQI 76
            W  L +++Q + + RRR L R+L+  TM+   DPD+F+ HV+ L ++L  +G  +++E+L DI+L+GL  +Y  I
Sbjct:  236 WKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEYHLI 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14172.2534.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE5.790e-938.67Integrase catalytic domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..91
e-value: 5.0E-14
score: 52.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14172contigH-paniculata_contig14172:6219..6533 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14172.2534.1mRNA_H-paniculata_contig14172.2534.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14172 6219..6533 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14172.2534.1 ID=prot_H-paniculata_contig14172.2534.1|Name=mRNA_H-paniculata_contig14172.2534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
AWDGLIAEYQNSSKQRRRILIRQLDGMTMKQDQDPDVFLAHVFQLRDELA
HMGEEISEERLTDIVLEGLTDDYEQIEYNVERDPDFSINEIEVTMRNMFA
NRVA*
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