mRNA_H-paniculata_contig14172.2534.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14172.2534.1
Unique NamemRNA_H-paniculata_contig14172.2534.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14172.2534.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.790e-9
Identity = 29/75 (38.67%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    4 WDGLIAEYQNSSKQRRRILIRQLDGMTMKQDQDPDVFLAHVFQLRDELAHMGEEISEERLTDIVLEGLTDDYEQI 228
            W  L +++Q + + RRR L R+L+  TM+   DPD+F+ HV+ L ++L  +G  +++E+L DI+L+GL  +Y  I
Sbjct:  236 WKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEYHLI 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14172.2534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE5.790e-938.67Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14172contigH-paniculata_contig14172:6219..6533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929126.792572-CDS-H-paniculata_contig14172:6218..65331622929126.792572-CDS-H-paniculata_contig14172:6218..6533Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14172 6219..6533 -
1691480741.2392395-CDS-H-paniculata_contig14172:6218..65331691480741.2392395-CDS-H-paniculata_contig14172:6218..6533Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14172 6219..6533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14172.2534.1prot_H-paniculata_contig14172.2534.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14172 6219..6533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14172.2534.1

>prot_H-paniculata_contig14172.2534.1 ID=prot_H-paniculata_contig14172.2534.1|Name=mRNA_H-paniculata_contig14172.2534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
AWDGLIAEYQNSSKQRRRILIRQLDGMTMKQDQDPDVFLAHVFQLRDELA
HMGEEISEERLTDIVLEGLTDDYEQIEYNVERDPDFSINEIEVTMRNMFA
NRVA*
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mRNA from alignment at H-paniculata_contig14172:6219..6533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14172.2534.1 ID=mRNA_H-paniculata_contig14172.2534.1|Name=mRNA_H-paniculata_contig14172.2534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at H-paniculata_contig14172:6219..6533- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTGGGACGGCTTGATTGCAGAATACCAAAATTCTTCGAAGCAGAGACG
CCGTATATTAATACGGCAGCTAGATGGCATGACCATGAAGCAGGATCAGG
ACCCCGACGTTTTTTTGGCCCATGTTTTTCAGCTTAGGGACGAACTAGCT
CACATGGGGGAAGAAATTTCTGAAGAGCGATTGACAGATATTGTTCTGGA
AGGTCTGACTGATGACTATGAACAAATAGAATATAATGTGGAGCGTGACC
CTGATTTTAGCATCAATGAAATTGAGGTCACAATGCGCAATATGTTTGCC
AATCGTGTAGCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig14172:6219..6533-

>mRNA_H-paniculata_contig14172.2534.1 ID=mRNA_H-paniculata_contig14172.2534.1|Name=mRNA_H-paniculata_contig14172.2534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig14172:6219..6533- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTGGGACGGCTTGATTGCAGAATACCAAAATTCTTCGAAGCAGAGACG
CCGTATATTAATACGGCAGCTAGATGGCATGACCATGAAGCAGGATCAGG
ACCCCGACGTTTTTTTGGCCCATGTTTTTCAGCTTAGGGACGAACTAGCT
CACATGGGGGAAGAAATTTCTGAAGAGCGATTGACAGATATTGTTCTGGA
AGGTCTGACTGATGACTATGAACAAATAGAATATAATGTGGAGCGTGACC
CTGATTTTAGCATCAATGAAATTGAGGTCACAATGCGCAATATGTTTGCC
AATCGTGTAGCATGAGCGTGGGACGGCTTGATTGCAGAATACCAAAATTC
TTCGAAGCAGAGACGCCGTATATTAATACGGCAGCTAGATGGCATGACCA
TGAAGCAGGATCAGGACCCCGACGTTTTTTTGGCCCATGTTTTTCAGCTT
AGGGACGAACTAGCTCACATGGGGGAAGAAATTTCTGAAGAGCGATTGAC
AGATATTGTTCTGGAAGGTCTGACTGATGACTATGAACAAATAGAATATA
ATGTGGAGCGTGACCCTGATTTTAGCATCAATGAAATTGAGGTCACAATG
CGCAATATGTTTGCCAATCGTGTAGCATGA
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