prot_H-paniculata_contig14048.2474.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14048.2474.1
Unique Nameprot_H-paniculata_contig14048.2474.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length37
Homology
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BLAST of mRNA_H-paniculata_contig14048.2474.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 6.280e-7
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 
Query:    5 SVVHAVSKYLDPHVLASLGSRSE-YVALRNILQ 36
            SV HAVSKYLDPHVLASLG RSE Y ALR++LQ
Sbjct:  736 SVTHAVSKYLDPHVLASLGGRSELYPALRDVLQ 768
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BLAST of mRNA_H-paniculata_contig14048.2474.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.610e-6
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 0 
Query:    5 SVVHAVSKYLDPHVLASLGSRSE-YVALRNILQ 36
            SV HAVSKYLDPHVL+SLG RSE Y+ALR+++Q
Sbjct:  652 SVTHAVSKYLDPHVLSSLGGRSELYLALRDVVQ 684
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14048.2474.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWM1_9PHAE6.280e-781.82RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
D8LBR1_ECTSI1.610e-675.76RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14048contigH-paniculata_contig14048:5410..5520 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14048.2474.1mRNA_H-paniculata_contig14048.2474.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14048 5410..5520 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14048.2474.1 ID=prot_H-paniculata_contig14048.2474.1|Name=mRNA_H-paniculata_contig14048.2474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
MPTGSVVHAVSKYLDPHVLASLGSRSEYVALRNILQA
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