mRNA_H-paniculata_contig14048.2474.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14048.2474.1
Unique NamemRNA_H-paniculata_contig14048.2474.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14048.2474.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 6.280e-7
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   13 SVVHAVSKYLDPHVLASLGSRSE-YVALRNILQ 108
            SV HAVSKYLDPHVLASLG RSE Y ALR++LQ
Sbjct:  736 SVTHAVSKYLDPHVLASLGGRSELYPALRDVLQ 768
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BLAST of mRNA_H-paniculata_contig14048.2474.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.610e-6
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   13 SVVHAVSKYLDPHVLASLGSRSE-YVALRNILQ 108
            SV HAVSKYLDPHVL+SLG RSE Y+ALR+++Q
Sbjct:  652 SVTHAVSKYLDPHVLSSLGGRSELYLALRDVVQ 684
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14048.2474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWM1_9PHAE6.280e-781.82RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
D8LBR1_ECTSI1.610e-675.76RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14048contigH-paniculata_contig14048:5410..5520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size112
Cds size111
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929119.5498922-CDS-H-paniculata_contig14048:5409..55201622929119.5498922-CDS-H-paniculata_contig14048:5409..5520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14048 5410..5520 -
1691480738.2353156-CDS-H-paniculata_contig14048:5409..55201691480738.2353156-CDS-H-paniculata_contig14048:5409..5520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14048 5410..5520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14048.2474.1prot_H-paniculata_contig14048.2474.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14048 5410..5520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14048.2474.1

>prot_H-paniculata_contig14048.2474.1 ID=prot_H-paniculata_contig14048.2474.1|Name=mRNA_H-paniculata_contig14048.2474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
MPTGSVVHAVSKYLDPHVLASLGSRSEYVALRNILQA
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mRNA from alignment at H-paniculata_contig14048:5410..5520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14048.2474.1 ID=mRNA_H-paniculata_contig14048.2474.1|Name=mRNA_H-paniculata_contig14048.2474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=111bp|location=Sequence derived from alignment at H-paniculata_contig14048:5410..5520- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAACCGGCAGTGTTGTGCATGCTGTGTCCAAGTATTTGGACCCTCA
CGTGCTGGCCAGTCTGGGGAGTCGCTCCGAGTACGTGGCCCTACGAAACA
TTTTGCAGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig14048:5410..5520-

>mRNA_H-paniculata_contig14048.2474.1 ID=mRNA_H-paniculata_contig14048.2474.1|Name=mRNA_H-paniculata_contig14048.2474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at H-paniculata_contig14048:5410..5520- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAACCGGCAGTGTTGTGCATGCTGTGTCCAAGTATTTGGACCCTCA
CGTGCTGGCCAGTCTGGGGAGTCGCTCCGAGTACGTGGCCCTACGAAACA
TTTTGCAGGCAATGCCAACCGGCAGTGTTGTGCATGCTGTGTCCAAGTAT
TTGGACCCTCACGTGCTGGCCAGTCTGGGGAGTCGCTCCGAGTACGTGGC
CCTACGAAACATTTTGCAGGCA
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