prot_H-paniculata_contig1401.2450.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig1401.2450.1
Unique Name	prot_H-paniculata_contig1401.2450.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	335

Homology

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BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: A0A6H5JJW9_9PHAE (Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJW9_9PHAE)

HSP 1 Score: 323 bits (829), Expect = 2.400e-106
Identity = 166/246 (67.48%), Postives = 192/246 (78.05%), Query Frame = 0

Query:  108 TATAKKANTRALGRTREERRREEGFGMVIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKI----------------PSGTKPFVLIDGNFTPPGL--SHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSFLKKMEAQG-KLPQYKE 334
            TA+ +K     LGRTRE R+  EGF  VIG+DEAGRGPFAGPVVAAAC +PP+V+I GIQDSKK+TQ SDRE L++EL  T GV WAT EVGS RIDEINILEATKEAMT C+LE+C K                  S  KPFVL+DGNFTPPGL  + V+AECV+GGDGLE+CIAAASIIAKVTRDR+MIE+ +RWPVFGFE+HKGYGT  HRDAIR+HG ++IHRRSFLK ME+ G KL +YKE
Sbjct:  103 TASVQKKTKSTLGRTRENRKLAEGFDAVIGLDEAGRGPFAGPVVAAACMIPPDVNILGIQDSKKITQHSDRETLFKELTETPGVIWATSEVGSSRIDEINILEATKEAMTNCVLEVCSKSVEPSANKGMKTNWKKNASDKKPFVLVDGNFTPPGLGDAKVEAECVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVFGFERHKGYGTAAHRDAIREHGMVEIHRRSFLKNMESSGGKLAEYKE 348

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BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: D8RCY3_SELML (Ribonuclease (Fragment) n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RCY3_SELML)

HSP 1 Score: 207 bits (528), Expect = 4.840e-63
Identity = 108/185 (58.38%), Postives = 129/185 (69.73%), Query Frame = 0

Query:  135 VIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSF 319
            VIGVDEAGRGP AGPVVAAAC +P +V I GI DSKK+T    RE LY ++  T GVR++ C V + RIDEINIL+AT EAM  C+ EL         P++LIDGN  P GLS   A  V+ GD     IAAASI+AKVTRDR+M +Y KRWP++GF+ HKGYGT  H  A+ +HGP  IHRRSF
Sbjct:    3 VIGVDEAGRGPLAGPVVAAACIIPEDVDIQGIDDSKKLTA-EKREQLYSQITSTPGVRFSICVVDAPRIDEINILQATMEAMETCVEELTGN-GRDHPPYILIDGNRIPGGLSGKHARSVVKGDAESHVIAAASILAKVTRDRLMEDYDKRWPLYGFKDHKGYGTASHTAALLKHGPCDIHRRSF 185

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BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: A0A2K1L292_PHYPA (Ribonuclease n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L292_PHYPA)

HSP 1 Score: 201 bits (511), Expect = 1.290e-58
Identity = 105/191 (54.97%), Postives = 132/191 (69.11%), Query Frame = 0

Query:  129 EEGFGMVIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSF 319
            E GF  V GVDEAGRGP AGPVVAAAC +P    I G+ DSKK+T+ + RE+LY ++V T GV +A   V + +IDEINIL+AT  AM+ C+ +L  +       ++LIDGN  P  LS  +A+ VI GD     IAAASI+AKVTRDRMM++Y +RWPV+GF+ HKGYGT  H  A+  HGP  IHRRSF
Sbjct:  138 ELGFRNVAGVDEAGRGPLAGPVVAAACIIPASATIPGVDDSKKLTE-AQREELYAQIVATPGVAYAIHVVDAAKIDEINILQATLLAMSTCVKKLRKERGGEAPDYILIDGNRIPDELSKEEAQFVIKGDAECHVIAAASILAKVTRDRMMVDYDRRWPVYGFKAHKGYGTAAHIGALLNHGPCDIHRRSF 327

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BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: G4Z1P2_PHYSP (Ribonuclease n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z1P2_PHYSP)

HSP 1 Score: 195 bits (496), Expect = 2.040e-57
Identity = 110/213 (51.64%), Postives = 143/213 (67.14%), Query Frame = 0

Query:  115 NTRALGRTREERRREEGFGMVIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSF--LKKMEA 325
            +T  L RT E R + +G+  VIGVDEAGRGP AGPVVAAAC+VP +V I G+ DSKK+++   RE L+E L     + +A     + RIDEINIL+A+ E+MTK   E+ +++    K FVL+DGN  PP L  + AE V+ GD   + IAAASIIAKVTRDR+M EY +++P +G  KHKGY T+ H  AI +HGP  IHR +F  LK  EA
Sbjct:   32 STSTLARTFETRYQAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIEGVDDSKKISE-PQREALFELLTNHPSITYAVHVNSAQRIDEINILQASLESMTKSANEVAERLQQTDKTFVLVDGNKLPPTL-ELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMREYDEQYPQYGLAKHKGYPTRDHVAAIAKHGPCAIHRMTFAPLKPKEA 242

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BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: W2QYI7_PHYPN (Ribonuclease n=12 Tax=Phytophthora TaxID=4783 RepID=W2QYI7_PHYPN)

HSP 1 Score: 192 bits (489), Expect = 5.080e-56
Identity = 108/209 (51.67%), Postives = 140/209 (66.99%), Query Frame = 0

Query:  119 LGRTREERRREEGFGMVIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSF--LKKMEA 325
            L R  E R   +G+  VIGVDEAGRGP  GPVVAAAC+VP +V I G+ DSKK+ +   RE L+E L     + +A     + RIDEINIL+A+ E+MTK + E+ +++    K FVL+DGN  PP L  + AE VI GD   + IAAASIIAKVTRDR+M EY +++P +G  +HKGY T+GH  AI +HGP +IHR +F  LK  EA
Sbjct:   63 LSRIFETRYEAKGYTTVIGVDEAGRGPLVGPVVAAACHVPLDVTIPGVDDSKKILE-PQREALFELLTTHPSITYAVHVNSAQRIDEINILQASLESMTKSVNEVAERLQQKDKTFVLVDGNKLPPTL-ELPAEAVIKGDSKVYSIAAASIIAKVTRDRLMREYDEKFPQYGLAQHKGYPTRGHVAAIAKHGPCEIHRMTFAPLKPKEA 269

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BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: A0A225WDA0_9STRA (Ribonuclease n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDA0_9STRA)

HSP 1 Score: 192 bits (487), Expect = 9.540e-56
Identity = 116/232 (50.00%), Postives = 153/232 (65.95%), Query Frame = 0

Query:   97 SRSKRAKKAPSTATA-KKANTRALGRTREERRREEGFGMVIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSF--LKKMEA 325
            SR+ RA K   TA   +K +   L R  E R   +G+  VIGVDEAGRGP AGPVVAAAC+VP +V I G+ DSKK+++   RE+L+E L     + +A     + RIDEINIL+A+ E+MTK + E+ +K+    K FVL+DGN  PP L  + AE V+ GD   + IAAASIIAKVTRDR+M EY +++P +G  +HKGY T+ H  AI +HGP +IHR +F  LK  EA
Sbjct:   40 SRAPRASKPKKTAKKDEKQSISTLSRVFETRYEAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIEGVDDSKKISE-PQREELFELLTNHPKITYAVHVNSAQRIDEINILQASLESMTKSVNEVAEKLQQD-KTFVLVDGNKLPPTL-ELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMREYDEKFPQYGLAQHKGYPTRAHVAAIAKHGPCEIHRMTFAPLKPKEA 268

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BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: M4BHL7_HYAAE (Ribonuclease n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BHL7_HYAAE)

HSP 1 Score: 190 bits (483), Expect = 7.100e-55
Identity = 103/209 (49.28%), Postives = 141/209 (67.46%), Query Frame = 0

Query:  111 AKKANTRALGRTREERRREEGFGMVIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSF 319
            AK+  T  L R  E R    G+ +VIGVDEAGRGP AGPVVAAAC+VP +V IAG+ DSKK+ + S RE+L+E +     + +A     + RIDE+NIL+A+ E+M K + ++ +++    + FVL+DGN  PP L  + AE V+ GD   + IAAASIIAKVTRDR+M EY +++P +G  +HKGY T+ H  AI +HGP  IHR +F
Sbjct:   58 AKEGPTFTLSRVFETRYEARGYSVVIGVDEAGRGPLAGPVVAAACHVPLDVTIAGVNDSKKIVE-SQREELFELVTTHPRITYAVHINSAQRIDEMNILQASLESMAKSVHDVAERLQQTDRTFVLVDGNKLPPTL-ELSAETVVKGDTKVYSIAAASIIAKVTRDRLMREYDQQYPQYGLAQHKGYPTKAHVAAIAKHGPCAIHRMTF 264

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BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: A0A836CIH6_9STRA (Ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH6_9STRA)

HSP 1 Score: 186 bits (472), Expect = 2.040e-54
Identity = 101/194 (52.06%), Postives = 127/194 (65.46%), Query Frame = 0

Query:  127 RREEGFGMVIGVDEAGRGPFAGPVVAAACYVPPE-VHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSF 319
            R + G   VIGVDEAGRGP AGPV AAA  +P   + IAG+ DSK + +  +RE LYEEL    G  W+     + RIDEINIL+AT E+M     ++  + P   K  VLIDGN  P  +  + AEC+I GDG E+ IAAASIIAKVTRDR+M +Y +++P +GFE+HKGYGT  H  AI QHG   IHR +F
Sbjct:   13 RLQAGIDWVIGVDEAGRGPLAGPVCAAAYALPATGLRIAGVVDSKLIAE-PERERLYEELTAVRGALWSATVTSAQRIDEINILQATMESMQISAHDVMRQCPPAAKAAVLIDGNRVPDNM-ELPAECIIKGDGKEYSIAAASIIAKVTRDRLMRQYHEQYPAYGFERHKGYGTAAHMAAIAQHGACPIHRMTF 204

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BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: A0A2R6XCN5_MARPO (Ribonuclease n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XCN5_MARPO)

HSP 1 Score: 189 bits (479), Expect = 3.610e-54
Identity = 99/190 (52.11%), Postives = 130/190 (68.42%), Query Frame = 0

Query:  131 GFGMVIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKP-FVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSF 319
            GF  V GVDEAGRGP AGPVVAAAC +P  V+I GI DSKK+T+ + RE+LYE++  T G+ +A   V +  IDE+NIL+AT +AM+ C+  L        +P F+L+DGN  P G    ++  V+ GD +   IAAASI+AKVTRDR+M+ Y K WP +GF+ HKGYGT  H  A+ ++GP  IHRRSF
Sbjct:  110 GFQHVAGVDEAGRGPLAGPVVAAACIIPSSVNIEGIDDSKKLTE-AKREELYEKITSTPGISYAIHVVDAAIIDEVNILQATMQAMSACVQVLSCASQENPRPDFILVDGNRLPDGFPE-NSRSVVKGDAVCQVIAAASILAKVTRDRLMLSYDKTWPNYGFKAHKGYGTATHMAALLKYGPCDIHRRSF 297

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BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: A0A0P1ACX4_PLAHL (Ribonuclease n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACX4_PLAHL)

HSP 1 Score: 187 bits (474), Expect = 5.400e-54
Identity = 104/203 (51.23%), Postives = 134/203 (66.01%), Query Frame = 0

Query:  117 RALGRTREERRREEGFGMVIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSF 319
            R L R  E R + +G+  VIGVDEAGRGP AGPVVAAAC+VP +V I G+ DSKK+ Q   RE L+E L     + +A     + RIDEINIL+A+ EAMTK + ++  ++      FVL+DGN  PP L  + AE V+ GD   F IAAASIIAKVTRDR+M  Y  ++P +G  +HKGY T+ H  AI +HGP +IHR +F
Sbjct:   52 RTLSRQFETRYKAKGYSTVIGVDEAGRGPLAGPVVAAACHVPLDVVIEGVDDSKKILQ-ERREALFELLTTHPSITYAVHVNSAQRIDEINILQASLEAMTKAVNDVTKRLLQKDNIFVLVDGNKLPPTLD-LPAEAVVKGDSKVFSIAAASIIAKVTRDRIMRNYDDQYPQYGLAQHKGYPTRAHVAAIAKHGPCKIHRMTF 252

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JJW9_9PHAE	2.400e-106	67.48	Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
D8RCY3_SELML	4.840e-63	58.38	Ribonuclease (Fragment) n=5 Tax=Selaginella moelle...	[more]
A0A2K1L292_PHYPA	1.290e-58	54.97	Ribonuclease n=1 Tax=Physcomitrium patens TaxID=32...	[more]
G4Z1P2_PHYSP	2.040e-57	51.64	Ribonuclease n=4 Tax=Phytophthora TaxID=4783 RepID...	[more]
W2QYI7_PHYPN	5.080e-56	51.67	Ribonuclease n=12 Tax=Phytophthora TaxID=4783 RepI...	[more]
A0A225WDA0_9STRA	9.540e-56	50.00	Ribonuclease n=1 Tax=Phytophthora megakarya TaxID=...	[more]
M4BHL7_HYAAE	7.100e-55	49.28	Ribonuclease n=1 Tax=Hyaloperonospora arabidopsidi...	[more]
A0A836CIH6_9STRA	2.040e-54	52.06	Ribonuclease n=1 Tax=Tribonema minus TaxID=303371 ...	[more]
A0A2R6XCN5_MARPO	3.610e-54	52.11	Ribonuclease n=2 Tax=Marchantia polymorpha TaxID=3...	[more]
A0A0P1ACX4_PLAHL	5.400e-54	51.23	Ribonuclease n=1 Tax=Plasmopara halstedii TaxID=47...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 112..333 e-value: 1.2E-65 score: 223.3
IPR024567	Ribonuclease HII/HIII domain	PFAM	PF01351	RNase_HII	coord: 136..320 e-value: 2.0E-33 score: 115.9
IPR022898	Ribonuclease HII	PANTHER	PTHR10954:SF18	RIBONUCLEASE HII	coord: 100..324
IPR001352	Ribonuclease HII/HIII	PANTHER	PTHR10954	RIBONUCLEASE H2 SUBUNIT A	coord: 100..324
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..22
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..22
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 23..334
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..18 score: 0.656
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 127..320

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig1401	contig	H-paniculata_contig1401:11087..15429 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1401.2450.1	mRNA_H-paniculata_contig1401.2450.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig1401 10343..15709 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig1401.2450.1 ID=prot_H-paniculata_contig1401.2450.1|Name=mRNA_H-paniculata_contig1401.2450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=335bp
MRAAVSCCLLPLILRASGVVNSSIGFMAIQRGVSTRRSARLAGGKVGASD
SVIREARRPHAEIAKTSCDKGLKHAKKSKKTGEGGVSKGSSVAVARSRSK
RAKKAPSTATAKKANTRALGRTREERRREEGFGMVIGVDEAGRGPFAGPV
VAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGS
DRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVD
AECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQ
GHRDAIRQHGPIQIHRRSFLKKMEAQGKLPQYKE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR024567	RNase_HII/HIII_dom
IPR022898	RNase_HII
IPR001352	RNase_HII/HIII
IPR012337	RNaseH-like_sf