mRNA_H-paniculata_contig1401.2450.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1401.2450.1
Unique NamemRNA_H-paniculata_contig1401.2450.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: A0A6H5JJW9_9PHAE (Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJW9_9PHAE)

HSP 1 Score: 326 bits (836), Expect = 9.190e-103
Identity = 166/246 (67.48%), Postives = 192/246 (78.05%), Query Frame = 2 
Query:  602 TATAKKANTRALGRTREERRREEGFGMVIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKI----------------PSGTKPFVLIDGNFTPPGL--SHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSFLKKMEAQG-KLPQYKE 1282
            TA+ +K     LGRTRE R+  EGF  VIG+DEAGRGPFAGPVVAAAC +PP+V+I GIQDSKK+TQ SDRE L++EL  T GV WAT EVGS RIDEINILEATKEAMT C+LE+C K                  S  KPFVL+DGNFTPPGL  + V+AECV+GGDGLE+CIAAASIIAKVTRDR+MIE+ +RWPVFGFE+HKGYGT  HRDAIR+HG ++IHRRSFLK ME+ G KL +YKE
Sbjct:  103 TASVQKKTKSTLGRTRENRKLAEGFDAVIGLDEAGRGPFAGPVVAAACMIPPDVNILGIQDSKKITQHSDRETLFKELTETPGVIWATSEVGSSRIDEINILEATKEAMTNCVLEVCSKSVEPSANKGMKTNWKKNASDKKPFVLVDGNFTPPGLGDAKVEAECVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVFGFERHKGYGTAAHRDAIREHGMVEIHRRSFLKNMESSGGKLAEYKE 348
[Close]
BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: D8RCY3_SELML (Ribonuclease (Fragment) n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RCY3_SELML)

HSP 1 Score: 207 bits (528), Expect = 1.610e-59
Identity = 108/185 (58.38%), Postives = 129/185 (69.73%), Query Frame = 2 
Query:  683 VIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSF 1237
            VIGVDEAGRGP AGPVVAAAC +P +V I GI DSKK+T    RE LY ++  T GVR++ C V + RIDEINIL+AT EAM  C+ EL         P++LIDGN  P GLS   A  V+ GD     IAAASI+AKVTRDR+M +Y KRWP++GF+ HKGYGT  H  A+ +HGP  IHRRSF
Sbjct:    3 VIGVDEAGRGPLAGPVVAAACIIPEDVDIQGIDDSKKLTA-EKREQLYSQITSTPGVRFSICVVDAPRIDEINILQATMEAMETCVEELTGN-GRDHPPYILIDGNRIPGGLSGKHARSVVKGDAESHVIAAASILAKVTRDRLMEDYDKRWPLYGFKDHKGYGTASHTAALLKHGPCDIHRRSF 185
[Close]
BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: A0A2K1L292_PHYPA (Ribonuclease n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L292_PHYPA)

HSP 1 Score: 201 bits (511), Expect = 3.430e-55
Identity = 105/191 (54.97%), Postives = 132/191 (69.11%), Query Frame = 2 
Query:  665 EEGFGMVIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSF 1237
            E GF  V GVDEAGRGP AGPVVAAAC +P    I G+ DSKK+T+ + RE+LY ++V T GV +A   V + +IDEINIL+AT  AM+ C+ +L  +       ++LIDGN  P  LS  +A+ VI GD     IAAASI+AKVTRDRMM++Y +RWPV+GF+ HKGYGT  H  A+  HGP  IHRRSF
Sbjct:  138 ELGFRNVAGVDEAGRGPLAGPVVAAACIIPASATIPGVDDSKKLTE-AQREELYAQIVATPGVAYAIHVVDAAKIDEINILQATLLAMSTCVKKLRKERGGEAPDYILIDGNRIPDELSKEEAQFVIKGDAECHVIAAASILAKVTRDRMMVDYDRRWPVYGFKAHKGYGTAAHIGALLNHGPCDIHRRSF 327
[Close]
BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: G4Z1P2_PHYSP (Ribonuclease n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z1P2_PHYSP)

HSP 1 Score: 197 bits (500), Expect = 1.170e-54
Identity = 108/219 (49.32%), Postives = 143/219 (65.30%), Query Frame = 2 
Query:  623 NTRALGRTREERRREEGFGMVIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSFLKKMEAQGKLPQYK 1279
            +T  L RT E R + +G+  VIGVDEAGRGP AGPVVAAAC+VP +V I G+ DSKK+++   RE L+E L     + +A     + RIDEINIL+A+ E+MTK   E+ +++    K FVL+DGN  PP L  + AE V+ GD   + IAAASIIAKVTRDR+M EY +++P +G  KHKGY T+ H  AI +HGP  IHR +F      +   P+ K
Sbjct:   32 STSTLARTFETRYQAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIEGVDDSKKISE-PQREALFELLTNHPSITYAVHVNSAQRIDEINILQASLESMTKSANEVAERLQQTDKTFVLVDGNKLPPTL-ELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMREYDEQYPQYGLAKHKGYPTRDHVAAIAKHGPCAIHRMTFAPLKPKEAPKPKAK 248
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BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: W2QYI7_PHYPN (Ribonuclease n=12 Tax=Phytophthora TaxID=4783 RepID=W2QYI7_PHYPN)

HSP 1 Score: 194 bits (493), Expect = 2.630e-53
Identity = 106/215 (49.30%), Postives = 140/215 (65.12%), Query Frame = 2 
Query:  635 LGRTREERRREEGFGMVIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSFLKKMEAQGKLPQYK 1279
            L R  E R   +G+  VIGVDEAGRGP  GPVVAAAC+VP +V I G+ DSKK+ +   RE L+E L     + +A     + RIDEINIL+A+ E+MTK + E+ +++    K FVL+DGN  PP L  + AE VI GD   + IAAASIIAKVTRDR+M EY +++P +G  +HKGY T+GH  AI +HGP +IHR +F      +   P+ K
Sbjct:   63 LSRIFETRYEAKGYTTVIGVDEAGRGPLVGPVVAAACHVPLDVTIPGVDDSKKILE-PQREALFELLTTHPSITYAVHVNSAQRIDEINILQASLESMTKSVNEVAERLQQKDKTFVLVDGNKLPPTL-ELPAEAVIKGDSKVYSIAAASIIAKVTRDRLMREYDEKFPQYGLAQHKGYPTRGHVAAIAKHGPCEIHRMTFAPLKPKEAPKPKAK 275
[Close]
BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: A0A225WDA0_9STRA (Ribonuclease n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDA0_9STRA)

HSP 1 Score: 193 bits (491), Expect = 4.810e-53
Identity = 114/238 (47.90%), Postives = 153/238 (64.29%), Query Frame = 2 
Query:  569 SRSKRAKKAPSTATA-KKANTRALGRTREERRREEGFGMVIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSFLKKMEAQGKLPQYK 1279
            SR+ RA K   TA   +K +   L R  E R   +G+  VIGVDEAGRGP AGPVVAAAC+VP +V I G+ DSKK+++   RE+L+E L     + +A     + RIDEINIL+A+ E+MTK + E+ +K+    K FVL+DGN  PP L  + AE V+ GD   + IAAASIIAKVTRDR+M EY +++P +G  +HKGY T+ H  AI +HGP +IHR +F      +   P+ K
Sbjct:   40 SRAPRASKPKKTAKKDEKQSISTLSRVFETRYEAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIEGVDDSKKISE-PQREELFELLTNHPKITYAVHVNSAQRIDEINILQASLESMTKSVNEVAEKLQQD-KTFVLVDGNKLPPTL-ELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMREYDEKFPQYGLAQHKGYPTRAHVAAIAKHGPCEIHRMTFAPLKPKEAPKPKAK 274
[Close]
BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: M4BHL7_HYAAE (Ribonuclease n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BHL7_HYAAE)

HSP 1 Score: 190 bits (483), Expect = 1.260e-51
Identity = 103/209 (49.28%), Postives = 141/209 (67.46%), Query Frame = 2 
Query:  611 AKKANTRALGRTREERRREEGFGMVIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSF 1237
            AK+  T  L R  E R    G+ +VIGVDEAGRGP AGPVVAAAC+VP +V IAG+ DSKK+ + S RE+L+E +     + +A     + RIDE+NIL+A+ E+M K + ++ +++    + FVL+DGN  PP L  + AE V+ GD   + IAAASIIAKVTRDR+M EY +++P +G  +HKGY T+ H  AI +HGP  IHR +F
Sbjct:   58 AKEGPTFTLSRVFETRYEARGYSVVIGVDEAGRGPLAGPVVAAACHVPLDVTIAGVNDSKKIVE-SQREELFELVTTHPRITYAVHINSAQRIDEMNILQASLESMAKSVHDVAERLQQTDRTFVLVDGNKLPPTL-ELSAETVVKGDTKVYSIAAASIIAKVTRDRLMREYDQQYPQYGLAQHKGYPTKAHVAAIAKHGPCAIHRMTF 264
[Close]
BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: A0A5D6XRI3_9STRA (Ribonuclease n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRI3_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.910e-51
Identity = 102/201 (50.75%), Postives = 133/201 (66.17%), Query Frame = 2 
Query:  668 EGFGMVIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSFLKKMEAQGKLP 1270
            +GF  V+GVDEAGRGP AGPVVAAAC+VP +V + G+ DSKK+ + + RE LYE+L     V+WA     + RIDEINIL+A+ E+M K   E  +++P     FV +DGN  PP +   DAE V+ GD   F IAAASIIAKVTRDR+M+ Y  ++P F F++HKGY T+ H  AI +HGP +IHR +F        K P
Sbjct:   16 KGFKYVVGVDEAGRGPLAGPVVAAACHVPLDVLLEGVHDSKKLNE-AQREALYEQLTTHPRVQWAVHVNSAQRIDEINILQASLESMVKAA-EALNQMPD----FVFVDGNRMPPTIPW-DAETVVKGDSKVFSIAAASIIAKVTRDRLMVAYDAQFPQFNFKQHKGYPTKDHMTAIAKHGPCEIHRMTFAPLKPKDAKKP 209
[Close]
BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: A0A836CIH6_9STRA (Ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH6_9STRA)

HSP 1 Score: 186 bits (472), Expect = 3.040e-51
Identity = 101/194 (52.06%), Postives = 127/194 (65.46%), Query Frame = 2 
Query:  659 RREEGFGMVIGVDEAGRGPFAGPVVAAACYVPPE-VHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSF 1237
            R + G   VIGVDEAGRGP AGPV AAA  +P   + IAG+ DSK + +  +RE LYEEL    G  W+     + RIDEINIL+AT E+M     ++  + P   K  VLIDGN  P  +  + AEC+I GDG E+ IAAASIIAKVTRDR+M +Y +++P +GFE+HKGYGT  H  AI QHG   IHR +F
Sbjct:   13 RLQAGIDWVIGVDEAGRGPLAGPVCAAAYALPATGLRIAGVVDSKLIAE-PERERLYEELTAVRGALWSATVTSAQRIDEINILQATMESMQISAHDVMRQCPPAAKAAVLIDGNRVPDNM-ELPAECIIKGDGKEYSIAAASIIAKVTRDRLMRQYHEQYPAYGFERHKGYGTAAHMAAIAQHGACPIHRMTF 204
[Close]
BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Match: A0A2R6XCN5_MARPO (Ribonuclease n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XCN5_MARPO)

HSP 1 Score: 189 bits (479), Expect = 6.030e-51
Identity = 99/190 (52.11%), Postives = 130/190 (68.42%), Query Frame = 2 
Query:  671 GFGMVIGVDEAGRGPFAGPVVAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGSDRIDEINILEATKEAMTKCILELCDKIPSGTKP-FVLIDGNFTPPGLSHVDAECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQGHRDAIRQHGPIQIHRRSF 1237
            GF  V GVDEAGRGP AGPVVAAAC +P  V+I GI DSKK+T+ + RE+LYE++  T G+ +A   V +  IDE+NIL+AT +AM+ C+  L        +P F+L+DGN  P G    ++  V+ GD +   IAAASI+AKVTRDR+M+ Y K WP +GF+ HKGYGT  H  A+ ++GP  IHRRSF
Sbjct:  110 GFQHVAGVDEAGRGPLAGPVVAAACIIPSSVNIEGIDDSKKLTE-AKREELYEKITSTPGISYAIHVVDAAIIDEVNILQATMQAMSACVQVLSCASQENPRPDFILVDGNRLPDGFPE-NSRSVVKGDAVCQVIAAASILAKVTRDRLMLSYDKTWPNYGFKAHKGYGTATHMAALLKYGPCDIHRRSF 297
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1401.2450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJW9_9PHAE9.190e-10367.48Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D8RCY3_SELML1.610e-5958.38Ribonuclease (Fragment) n=5 Tax=Selaginella moelle... [more]
A0A2K1L292_PHYPA3.430e-5554.97Ribonuclease n=1 Tax=Physcomitrium patens TaxID=32... [more]
G4Z1P2_PHYSP1.170e-5449.32Ribonuclease n=4 Tax=Phytophthora TaxID=4783 RepID... [more]
W2QYI7_PHYPN2.630e-5349.30Ribonuclease n=12 Tax=Phytophthora TaxID=4783 RepI... [more]
A0A225WDA0_9STRA4.810e-5347.90Ribonuclease n=1 Tax=Phytophthora megakarya TaxID=... [more]
M4BHL7_HYAAE1.260e-5149.28Ribonuclease n=1 Tax=Hyaloperonospora arabidopsidi... [more]
A0A5D6XRI3_9STRA1.910e-5150.75Ribonuclease n=1 Tax=Pythium brassicum TaxID=14850... [more]
A0A836CIH6_9STRA3.040e-5152.06Ribonuclease n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A2R6XCN5_MARPO6.030e-5152.11Ribonuclease n=2 Tax=Marchantia polymorpha TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1401contigH-paniculata_contig1401:10343..15709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.9
Seed ortholog evalue2.3e-86
Seed eggNOG ortholog2880.D7FM98
KEGG koko:K03470,ko:K10743
KEGG Pathwayko03030,map03030
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576
EggNOG free text desc.RNA-DNA hybrid ribonuclease activity
EggNOG OGsCOG0164@1,KOG2299@2759
Ec32 ortholog descriptionRibonuclease HII/HIII
Ec32 orthologEc-17_003740.1
EC3.1.26.4
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032
Exons7
Model size2029
Cds size1005
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929113.59637-UTR-H-paniculata_contig1401:10342..110861622929113.59637-UTR-H-paniculata_contig1401:10342..11086Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1401 10343..11086 -
1691480736.6495767-UTR-H-paniculata_contig1401:10342..110861691480736.6495767-UTR-H-paniculata_contig1401:10342..11086Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1401 10343..11086 -
1622929113.7256396-UTR-H-paniculata_contig1401:15429..157091622929113.7256396-UTR-H-paniculata_contig1401:15429..15709Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1401 15430..15709 -
1691480736.760675-UTR-H-paniculata_contig1401:15429..157091691480736.760675-UTR-H-paniculata_contig1401:15429..15709Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1401 15430..15709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929113.6133962-CDS-H-paniculata_contig1401:11086..112541622929113.6133962-CDS-H-paniculata_contig1401:11086..11254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1401 11087..11254 -
1691480736.670864-CDS-H-paniculata_contig1401:11086..112541691480736.670864-CDS-H-paniculata_contig1401:11086..11254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1401 11087..11254 -
1622929113.625528-CDS-H-paniculata_contig1401:11484..116701622929113.625528-CDS-H-paniculata_contig1401:11484..11670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1401 11485..11670 -
1691480736.6819525-CDS-H-paniculata_contig1401:11484..116701691480736.6819525-CDS-H-paniculata_contig1401:11484..11670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1401 11485..11670 -
1622929113.6388886-CDS-H-paniculata_contig1401:11964..121021622929113.6388886-CDS-H-paniculata_contig1401:11964..12102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1401 11965..12102 -
1691480736.6974406-CDS-H-paniculata_contig1401:11964..121021691480736.6974406-CDS-H-paniculata_contig1401:11964..12102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1401 11965..12102 -
1622929113.6503744-CDS-H-paniculata_contig1401:12902..129731622929113.6503744-CDS-H-paniculata_contig1401:12902..12973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1401 12903..12973 -
1691480736.706801-CDS-H-paniculata_contig1401:12902..129731691480736.706801-CDS-H-paniculata_contig1401:12902..12973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1401 12903..12973 -
1622929113.6722035-CDS-H-paniculata_contig1401:13356..134231622929113.6722035-CDS-H-paniculata_contig1401:13356..13423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1401 13357..13423 -
1691480736.71549-CDS-H-paniculata_contig1401:13356..134231691480736.71549-CDS-H-paniculata_contig1401:13356..13423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1401 13357..13423 -
1622929113.6873546-CDS-H-paniculata_contig1401:14737..149771622929113.6873546-CDS-H-paniculata_contig1401:14737..14977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1401 14738..14977 -
1691480736.7331786-CDS-H-paniculata_contig1401:14737..149771691480736.7331786-CDS-H-paniculata_contig1401:14737..14977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1401 14738..14977 -
1622929113.7089503-CDS-H-paniculata_contig1401:15294..154291622929113.7089503-CDS-H-paniculata_contig1401:15294..15429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1401 15295..15429 -
1691480736.7508583-CDS-H-paniculata_contig1401:15294..154291691480736.7508583-CDS-H-paniculata_contig1401:15294..15429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1401 15295..15429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1401.2450.1prot_H-paniculata_contig1401.2450.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1401 11087..15429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1401.2450.1

>prot_H-paniculata_contig1401.2450.1 ID=prot_H-paniculata_contig1401.2450.1|Name=mRNA_H-paniculata_contig1401.2450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=335bp
MRAAVSCCLLPLILRASGVVNSSIGFMAIQRGVSTRRSARLAGGKVGASD
SVIREARRPHAEIAKTSCDKGLKHAKKSKKTGEGGVSKGSSVAVARSRSK
RAKKAPSTATAKKANTRALGRTREERRREEGFGMVIGVDEAGRGPFAGPV
VAAACYVPPEVHIAGIQDSKKVTQISDREDLYEELVRTSGVRWATCEVGS
DRIDEINILEATKEAMTKCILELCDKIPSGTKPFVLIDGNFTPPGLSHVD
AECVIGGDGLEFCIAAASIIAKVTRDRMMIEYAKRWPVFGFEKHKGYGTQ
GHRDAIRQHGPIQIHRRSFLKKMEAQGKLPQYKE*
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mRNA from alignment at H-paniculata_contig1401:10343..15709-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1401.2450.1 ID=mRNA_H-paniculata_contig1401.2450.1|Name=mRNA_H-paniculata_contig1401.2450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5367bp|location=Sequence derived from alignment at H-paniculata_contig1401:10343..15709- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACGATATACACACCCACATTCCCTACGATTGTTATGTGATAAGTGTAT
AAAATAGTCTAGATTCATTTGATTTAGTACGAGAGGCTGTTCCTTCCATT
TGCTGGTCGTAAATACATTATGATTGATTGTTGGACTGTTTTTGTTCTGG
AGGAAAGATGTGCTCACTAATGCGGGTCTGAGCGATTGCGTAACCATTGA
AGAACAACAAGTAAAGCAACGGAGGAGATACGGTTGGATACAAAACTTGA
CTGTGGGCTGGAGGGCTGATGGGGTTATAGATGCGTGCGGCTGTGAGCTG
CTGTTTACTCCCCTTGATATTGCGGGCAAGTGGTGTGGTCAATAGTAGTA
TTGGGTTCATGGCTATTCAGCGCGGAGTATCAACTAGGCGATCGGCGCGC
TTAGCTGGAGGCAAGGTAAATCATAAATCACAGATCAGTTTGACAGTTTA
TGACCCGGAGTTGAGTTAGTAAATAGACTTTAGGCGCTCTCTGAAGATGG
TTCACTGTTATGTAGCCATGTATATGATCCAATGTGCGCAGCAGATTCCT
GCTTAAGGATGATGACAACAACTTCACGGTGTAGACAGACGTCGTTGCTA
CCTCCTTGTCCTCCATGAGTGCAACGGAGATCGAGGCATTGCTTTCATTC
AACCTTTTCCTGTTAAGGTTCTGCTGTGTCGGTTTTCTGTTCCGAAAAGA
ATGCCGCCTACAAACAATGTACCACAAAACAGGTCGGTGCGAGTGACTCG
GTGATACGCGAGGCGCGGCGGCCTCACGCAGAAATTGCAAAGACATCGTG
TGATAAGGGATTGAAACATGCCAAGAAGAGCAAGAAAACAGGTGAAGGTG
GTGTTAGCAAAGGCTCCTCGGTAGCGGTGGCGAGAAGTCGATCGAAGAGG
GCGAAAAAGGCGCCAAGTACAGCGACAGCAAAAAAGGCTAACACTCGTGC
GTTGGGGCGCACTCGAGAAGAGGTAATTAAGCTATGCGACGTTCATGCGA
CTGCGGGAAGTGGTTAGGGGCTTAGGGGATGGAAGGGTGTTGTGGTAGGG
CAGCCATGTGCTCACAGACTTCGTATGTCTTATGTTGCTGACCTGTCTGC
TTGGTGTACAACGCAGTGAGTTATCTTGCGAATGTATTCGTCCGTCGTGT
GCTTCATGTCAGTGCCGATCAGATATTCAAATATTTCATGTTTTGAGGGA
CGCGATATGAGGTTCGGAAATCGACATTTGGAAGTAATTTGCATCAATAG
AAGATGGCGGTTCCTCTTGAAGCGTACGCTGCTAGCCCGCTCAAACGCAT
CGCAAAAAGTATCGCCCAAAAACACGATCACCCAGTACCCCCTCGGTGCC
AGTAGTGTCTCCCGAAAACAGTGTTGGCAATCGGACGTTTTCCACTCCGA
TACGATATCCAGTAGTATCATGTTTTTTTTCTGATGGCTCGATACGATAC
GGCATGTTGTGACGCCGAGATGCCGAGTCAGGTCGACAAATCACGACGAT
ATTCTTGTACTAATCGTGCAGACGTGAAGACTAATTGCATGCAATGGCCT
ACCGTAAGATCGTGCGTCGTGAAGTTGTACACCACCGATATTTACAACAT
CTAGTGTCATAAACAATCAATTCGCATAGACACACGCAAGCAGGTACAAC
AGTTTGTGCAACGAGTGTTCGTAACACCTGCCCAAAACCCAAATCATCTC
GGGTCCCGGCAGAATACAGGTCTCAGATCCGAACGGTTACTAGAAGGGTA
AACGGGTCAAGCAACCGACGGTAGATCCGTGTTGTGAGATGTACCGACTG
AAGCCCAAAGGAGCAAGAAAGGCCACGGTTGGTGAGGGTGAACCCATCTT
AATTTGTCACTGAACTTCCCTCTCACATCTCACGGAAGGATAAGAAAGCC
TTGACCTACTGTCTCGTTAAAGTCACGGAATGTCACGCTTCACACCGGTG
ACCCCGGTGAGATTAGAACTCACTTGTGCGAAGCACAATGCATCACGCAT
TCACAGCTACGTGCATATCAATAGTATTTCTTCACATCGCAATTGCAACC
AAACGGAAGATCCTGTTGTTGGAACACGATAACCATTACCGAAACATCAA
TGGAACATGACCATGGTATCATATATCGGTATATCGGAACTAATTATATA
TACAAAATATCGAACAATAAAATTTAAAAAGATATCACGATATCAGGCGA
TTCGACGCGATATTTTTCTCCGATAGGATACGATCTTCAATTTTCAACAG
TGCTTATTGCTATTTTTTTCACCACACACAAAACAGAGAAGACGCGAAGA
GGGGTTTGGGATGGTGATTGGCGTTGACGAGGCTGGACGAGGACCATTCG
CAGGTAATATCATGTATGACTTTACGAGACATATTTCCCTCAACGCAGCA
TGGATTACAGGTAGTCCGTCACCACAATCCGGACCATTGTTGCCTTTGAG
GTTCGGACACTGTAGGAACCAGTTTAGAGGTGGCATGTGAAGCGGTGTGT
CCAAGCGTGTATCCATGATAATCAAGTCGAATGCCGCCCAAAATAGCTGG
AAGGGCGACATATCGTTGTAGCCGTAGTCGTTGCGAGTTGTAGCTGCATG
TCCAATGCTATGCACCTGTGATGGATTTATTTCACCGTTTATCGCTTTTT
TCGCTGCTAAAGCTTTGTCCTAGGTTGGATGAACCTCCGTCAATGGATTA
CGCGTCATCATTTTGTGTGTCTTTTGCCTCTCGTAGGGCCTGTTGTGGCG
GCCGCGTGCTACGTCCCGCCCGAGGTTCATATTGCTGGCATCCAGGACAG
CAAAAAGGTGCGGCAGACCCTAGTGTTTGCATAGCGTCGGTTTGTAGAAA
GAAGCGTAAACTATGACAACCCCTTCTATCTGCTTCCCAGCAGAAATTTT
TGCTGGTAATGGCTTCTCGCGAAGGCTGTGTTTTCACGTTTTGTCGGTGA
AACCTACCCGCCAAGGTCAATACCTAAACACGATATTCTGCCTCAGCTTT
CAGGTTTATATTGCAAGGGTGCACCTGTCAACATATCATTTTGCGATTTC
GGACTCGCGATACGACCCGCGATACTTCGATAACAATCGCACGGAGCGCA
GCAAGGAAACTTCTGTTAGGAAAAATTACTATCATCGAAAGCTATGATGG
GGAATAAACCATGTGGTATTAGCTGTCGAACTTACCGAGAGTTTCACTCT
TCTGATGGATGAAAAGAACAATAAAATTGGCATCCATTTTGTAGATTTCG
CGAAGGCAATAGCCAGTGACCGACCCCACCTGATCTCAATTATCTGGGTA
TGCTTTATCTCGAACCGTACGAGGTGCTACTAATATCACCCCCCCCCACG
CTGGCCGGGAATTCTCACACACTAAATCTCACTGTACCTTCTATTGCGTG
ACCGGATAAACATGGGTCCTCGAAAGATGCATGTTTCTCTAGGATGGGTC
TTGCGAACAGACGAAGCCTCTGGGTAGTCATTAGTTGAGGATTGGTGAGC
TATCTTGTATCGTGAAAAGCATATGGCCAACATTATTGCTTGCTTATGTA
GCATTCGTGGTGTAACCCGTTTGCTCTCTTCGTTGTGTTTTCTGCTCTTC
TCGTCAGGTGACGCAGATCAGTGATCGGGAAGATCTTTATGAGGAGTTGG
TGAGAACGTCCGGCGTGCGATGGGCCACGTGCGAGGTTGGGAGTGATCGC
ATCGATGAAATCAATATTCTTGAGGCCACCAAAGAGGCCATGACGGTGAG
CAAACCAAAGTGAAAGAGAATTGGCTCATGGCCAAAAGGTCCAATTTTTC
GAGTACCTGACCTCGCTGAACGTCTTGATACGTACGACTTTTGGGTGGTT
TAATATATATATAACAAGAACAAACATTATCCAGTTAACGTCTGATGAAT
CAGAATTGCCAGTGACCCTTCAAGTATTTCACGTCCGACGGGTATTTTAC
GCGACTTCTGGATGCCTAGAATTCGCACTCAATTTTTTCTTCGCAATTCT
TTTACACGCGTGTCGGGTGCTCCGCCCAATGATCTTCAGAAATGCATATT
AGAATTGTGCGACAAGATCCCTAGCGGCACGAAGCCATTCGTGTTGATCG
ATGGCAATTTTACGCCACCTGGGTTATCGCATGTGGACGCCGAGTGCGTG
ATCGGGGGTGACGGGCTTGAATTCTGCATCGCGGCAGCAAGCATTATCGC
GAAGGTTACTCGAGATCGAATGATGGTGAGCCGCGAGACAGGGATGCAAT
TTTCTTTGGAAATGAGTGGAGTAGCGCAGGGGCTCGTCTAAGCTTTTGTT
ATCTCAGGCCAATCAAAGGCGCTGTCGCGCTTTTCCGAACAGGGTTTGTA
AGAACACGCCTCGCGTACTCTTTGCCTCTCTTTTTGACGCTGCCTCGCAC
ACTGTATTCAGTGGTGATTAAGAAACAGTGTACCGCTTGCTTCATTGCCG
CGCAGATTGAGTACGCTAAACGGTGGCCAGTTTTCGGGTTCGAGAAACAC
AAGGGCTACGGAACGCAGGGGCACCGCGACGCGATTCGGCAGCACGGACC
CATACAGATACACCGGCGGAGTTTCCTCAAGAAGATGGAGGCGCAGGGGA
AGCTACCCCAGTACAAGGAATAATGGCATGGTTGGCCATCCTGGAAGATG
TGCTGGTGGGGTGCTAGGCGTACAACAACAGTAGCGGACACCAAAAACAG
ATGGTTTTGTCCGAGATCACAAGCAGTCGTCGCTGGACAACGGCTGGGAC
CATCACAGCGGCCACGACAACCCCATTGTAGAGAGTTAGCACTTCGCCAT
ATTTGTTCTGTGGGCGATGAACACTCACTTGTTGATGTTGAAGATGCTGT
CAGTCAGCGGGACATGTCTTCAACAGCAGTTCCTCATTTTTGGGGTTGCC
CGCTGCAGTGCGAATGGCGCGGTAAGTGGTCGGTGCCGTGTAGGAGCACA
ACATCAACAAGGAGACGACGTACACATTACGGTACTGTAGAGGCGAGGAA
GGTGTTTCGTGGATGTTCTTGTATTCAACTAGAATCGCCACGGGGTTCAG
CAATCTTACTTGGTGACAACCGGGCCTTTTTGTAACGGGGAACAGTTGCT
TTGGGTATGGGATACAGAGGCACCGAGGGAATTACGGTATTATTGGGCGT
ACTGTCTGCGTTTTGTGTCTTTTTTTTCACGAAATACCAGTCAGAGGCTG
AGGATGAAGCCGAGAAACATAACACAATCAATGGTCGATGGAAGAAGAAA
TTCCAAAGTGGCGCCTATTCTTCGGGTAATTTGCCATCATGTATTGATGT
TGGGCATACGTGTGTGTCGCCGATACCGCCCCAAGTGACGCGGTGAAATT
CCGAAAATAAACGCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig1401:10343..15709-

>mRNA_H-paniculata_contig1401.2450.1 ID=mRNA_H-paniculata_contig1401.2450.1|Name=mRNA_H-paniculata_contig1401.2450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2010bp|location=Sequence derived from alignment at H-paniculata_contig1401:10343..15709- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTGCGGCTGTGAGCTGCTGTTTACTCCCCTTGATATTGCGGGCAAG
TGGTGTGGTCAATAGTAGTATTGGGTTCATGGCTATTCAGCGCGGAGTAT
CAACTAGGCGATCGGCGCGCTTAGCTGGAGGCAAGATGCGTGCGGCTGTG
AGCTGCTGTTTACTCCCCTTGATATTGCGGGCAAGTGGTGTGGTCAATAG
TAGTATTGGGTTCATGGCTATTCAGCGCGGAGTATCAACTAGGCGATCGG
CGCGCTTAGCTGGAGGCAAGGTCGGTGCGAGTGACTCGGTGATACGCGAG
GCGCGGCGGCCTCACGCAGAAATTGCAAAGACATCGTGTGATAAGGGATT
GAAACATGCCAAGAAGAGCAAGAAAACAGGTGAAGGTGGTGTTAGCAAAG
GCTCCTCGGTAGCGGTGGCGAGAAGTCGATCGAAGAGGGCGAAAAAGGCG
CCAAGTACAGCGACAGCAAAAAAGGCTAACACTCGTGCGTTGGGGCGCAC
TCGAGAAGAGGTCGGTGCGAGTGACTCGGTGATACGCGAGGCGCGGCGGC
CTCACGCAGAAATTGCAAAGACATCGTGTGATAAGGGATTGAAACATGCC
AAGAAGAGCAAGAAAACAGGTGAAGGTGGTGTTAGCAAAGGCTCCTCGGT
AGCGGTGGCGAGAAGTCGATCGAAGAGGGCGAAAAAGGCGCCAAGTACAG
CGACAGCAAAAAAGGCTAACACTCGTGCGTTGGGGCGCACTCGAGAAGAG
AGAAGACGCGAAGAGGGGTTTGGGATGGTGATTGGCGTTGACGAGGCTGG
ACGAGGACCATTCGCAGAGAAGACGCGAAGAGGGGTTTGGGATGGTGATT
GGCGTTGACGAGGCTGGACGAGGACCATTCGCAGGGCCTGTTGTGGCGGC
CGCGTGCTACGTCCCGCCCGAGGTTCATATTGCTGGCATCCAGGACAGCA
AAAAGGGCCTGTTGTGGCGGCCGCGTGCTACGTCCCGCCCGAGGTTCATA
TTGCTGGCATCCAGGACAGCAAAAAGGTGACGCAGATCAGTGATCGGGAA
GATCTTTATGAGGAGTTGGTGAGAACGTCCGGCGTGCGATGGGCCACGTG
CGAGGTTGGGAGTGATCGCATCGATGAAATCAATATTCTTGAGGCCACCA
AAGAGGCCATGACGGTGACGCAGATCAGTGATCGGGAAGATCTTTATGAG
GAGTTGGTGAGAACGTCCGGCGTGCGATGGGCCACGTGCGAGGTTGGGAG
TGATCGCATCGATGAAATCAATATTCTTGAGGCCACCAAAGAGGCCATGA
CGAAATGCATATTAGAATTGTGCGACAAGATCCCTAGCGGCACGAAGCCA
TTCGTGTTGATCGATGGCAATTTTACGCCACCTGGGTTATCGCATGTGGA
CGCCGAGTGCGTGATCGGGGGTGACGGGCTTGAATTCTGCATCGCGGCAG
CAAGCATTATCGCGAAGGTTACTCGAGATCGAATGATGAAATGCATATTA
GAATTGTGCGACAAGATCCCTAGCGGCACGAAGCCATTCGTGTTGATCGA
TGGCAATTTTACGCCACCTGGGTTATCGCATGTGGACGCCGAGTGCGTGA
TCGGGGGTGACGGGCTTGAATTCTGCATCGCGGCAGCAAGCATTATCGCG
AAGGTTACTCGAGATCGAATGATGATTGAGTACGCTAAACGGTGGCCAGT
TTTCGGGTTCGAGAAACACAAGGGCTACGGAACGCAGGGGCACCGCGACG
CGATTCGGCAGCACGGACCCATACAGATACACCGGCGGAGTTTCCTCAAG
AAGATGGAGGCGCAGGGGAAGCTACCCCAGTACAAGGAATAAATTGAGTA
CGCTAAACGGTGGCCAGTTTTCGGGTTCGAGAAACACAAGGGCTACGGAA
CGCAGGGGCACCGCGACGCGATTCGGCAGCACGGACCCATACAGATACAC
CGGCGGAGTTTCCTCAAGAAGATGGAGGCGCAGGGGAAGCTACCCCAGTA
CAAGGAATAA
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