prot_H-paniculata_contig13897.2387.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig13897.2387.1
Unique Nameprot_H-paniculata_contig13897.2387.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length199
Homology
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 8.140e-41
Identity = 78/196 (39.80%), Postives = 121/196 (61.73%), Query Frame = 0
Query:    3 GHTKTGTPTVVSD-SEGKKPLRGQFTFSCKTNEMKDVVKFKARFVADGRAQIQDIDYDGVFPPIPSATAAKMVLPLEVQNDLQLFHFYTTQAFAQGRLDHTIFMKLPAGCGSLSGKTVKLDRALYGLKQAGRQWNTSLVDELVDFGVEQRMAKPCVFCEMVDDKVTVILSVHVDDMVVTGKKVDCNRLFDAISGIF 197
            GH KTGT T V +  EG+K +  ++ FS KTNE   ++ FKAR VA G +QI  ID+       PSA + K V+ +  +   +L H+   QA+   +L   I+++ P GCGS+SGK VK++RALYGLKQ+GR+W     D L+++G EQ    PC+F ++VD +V  ++ ++VDD++V   + +   LF +++  F
Sbjct:   41 GHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEYGYEQCRVDPCIFRKVVDGEVVGLIVINVDDILVAADEGEREDLFASLNNRF 236          
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 9.850e-40
Identity = 80/196 (40.82%), Postives = 120/196 (61.22%), Query Frame = 0
Query:    3 GHTKTGTPTVVSD-SEGKKPLRGQFTFSCKTNEMKDVVKFKARFVADGRAQIQDIDYDGVFPPIPSATAAKMVLPLEVQNDLQLFHFYTTQAFAQGRLDHTIFMKLPAGCGSLSGKTVKLDRALYGLKQAGRQWNTSLVDELVDFGVEQRMAKPCVFCEMVDDKVTVILSVHVDDMVVTGKKVDCNRLFDAISGIF 197
            GH KTGT T V +  EG+K +  ++ FS KTNE   +V FKAR VA G +QI  ID+       PSA + K V+ +  +   +L H+   QA+   +L   I+++ P GCGS+SGK VK++RALYGLKQ+GR+W     D L++ G EQ    PCVF ++VD +V  ++ ++VDD++V   + +   LF +++  F
Sbjct:  238 GHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAADEGEREELFASLNKKF 433          
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.990e-39
Identity = 80/196 (40.82%), Postives = 120/196 (61.22%), Query Frame = 0
Query:    3 GHTKTGTPTVVSD-SEGKKPLRGQFTFSCKTNEMKDVVKFKARFVADGRAQIQDIDYDGVFPPIPSATAAKMVLPLEVQNDLQLFHFYTTQAFAQGRLDHTIFMKLPAGCGSLSGKTVKLDRALYGLKQAGRQWNTSLVDELVDFGVEQRMAKPCVFCEMVDDKVTVILSVHVDDMVVTGKKVDCNRLFDAISGIF 197
            GH KTGT T V +  EG+K +  ++ FS KTNE   +V FKAR VA G +QI  ID+       PSA + K V+ +  +   +L H+   QA+   +L   I+++ P GCGS+SGK VK++RALYGLKQ+GR+W     D L++ G EQ    PCVF ++VD +V  ++ ++VDD++V   + +   LF +++  F
Sbjct:  483 GHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKF 678          
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 5.060e-39
Identity = 80/196 (40.82%), Postives = 119/196 (60.71%), Query Frame = 0
Query:    3 GHTKTGTPTVVSD-SEGKKPLRGQFTFSCKTNEMKDVVKFKARFVADGRAQIQDIDYDGVFPPIPSATAAKMVLPLEVQNDLQLFHFYTTQAFAQGRLDHTIFMKLPAGCGSLSGKTVKLDRALYGLKQAGRQWNTSLVDELVDFGVEQRMAKPCVFCEMVDDKVTVILSVHVDDMVVTGKKVDCNRLFDAISGIF 197
            GH KTGT T V +  EG+K +  ++ FS KTNE   +V FKAR VA G +QI  ID+       PSA + K V+ +  +   +L H+   QA+   +L   I+++ P GCGS+SGK VK++RALYGLKQ GR+W     D L++ G EQ    PCVF ++VD +V  ++ ++VDD++V   + +   LF +++  F
Sbjct:  525 GHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKF 720          
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 6.830e-39
Identity = 80/196 (40.82%), Postives = 120/196 (61.22%), Query Frame = 0
Query:    3 GHTKTGTPTVVSD-SEGKKPLRGQFTFSCKTNEMKDVVKFKARFVADGRAQIQDIDYDGVFPPIPSATAAKMVLPLEVQNDLQLFHFYTTQAFAQGRLDHTIFMKLPAGCGSLSGKTVKLDRALYGLKQAGRQWNTSLVDELVDFGVEQRMAKPCVFCEMVDDKVTVILSVHVDDMVVTGKKVDCNRLFDAISGIF 197
            GH KTGT T V +  EG+K +  ++ FS KTNE   +V FKAR VA G +QI  ID+       PSA + K V+ +  +   +L H+   QA+   +L   I+++ P GCGS+SGK VK++RALYGLKQ+GR+W     D L++ G EQ    PCVF ++VD +V  ++ ++VDD++V   + +   LF +++  F
Sbjct:  384 GHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILVAADEGEREELFASLNKKF 579          
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5KZ24_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ24_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 8.910e-39
Identity = 79/196 (40.31%), Postives = 119/196 (60.71%), Query Frame = 0
Query:    3 GHTKTGTPTVVSD-SEGKKPLRGQFTFSCKTNEMKDVVKFKARFVADGRAQIQDIDYDGVFPPIPSATAAKMVLPLEVQNDLQLFHFYTTQAFAQGRLDHTIFMKLPAGCGSLSGKTVKLDRALYGLKQAGRQWNTSLVDELVDFGVEQRMAKPCVFCEMVDDKVTVILSVHVDDMVVTGKKVDCNRLFDAISGIF 197
            GH KTGT T V +  EG+K +  ++ FS K NE   +V FKAR VA G +QI  ID+       PSA + K V+ +  +   +L H+   QA+   +L   I+++ P GCGS+SGK VK++RALYGLKQ+GR+W     D L++ G EQ    PCVF ++VD +V  ++ ++VDD++V   + +   LF +++  F
Sbjct:  290 GHDKTGTFTKVKELPEGRKAIGSKWVFSWKKNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFQKVVDGEVVGLIVIYVDDIIVAADEGEPEELFASLNKKF 485          
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 9.990e-39
Identity = 78/196 (39.80%), Postives = 121/196 (61.73%), Query Frame = 0
Query:    3 GHTKTGTPTVVSD-SEGKKPLRGQFTFSCKTNEMKDVVKFKARFVADGRAQIQDIDYDGVFPPIPSATAAKMVLPLEVQNDLQLFHFYTTQAFAQGRLDHTIFMKLPAGCGSLSGKTVKLDRALYGLKQAGRQWNTSLVDELVDFGVEQRMAKPCVFCEMVDDKVTVILSVHVDDMVVTGKKVDCNRLFDAISGIF 197
            GH KTGT T V +  EG++ +  ++ FS KTN    +V FKAR VA G +QI  ID+       PSA + K V+ +  +   +L H+   QA+   +L   I+++LP GCGS+SGK VK++RALYGLKQ+GR+W   + D L++ G EQ    PCVF ++VD +V  ++ ++VD+++V   + +   LF +++  F
Sbjct:  308 GHDKTGTFTKVKELPEGREAIGSKWVFSSKTNGKGLIVDFKARMVARGFSQIPGIDFHHSSSAFPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIENGCEQCRVDPCVFRKVVDGEVVGLIVIYVDEILVAADEGEREELFASLNKKF 503          
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5JG17_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG17_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 8.410e-38
Identity = 70/177 (39.55%), Postives = 108/177 (61.02%), Query Frame = 0
Query:   21 PLRGQFTFSCKTNEMKDVVKFKARFVADGRAQIQDIDYDGVFPPIPSATAAKMVLPLEVQNDLQLFHFYTTQAFAQGRLDHTIFMKLPAGCGSLSGKTVKLDRALYGLKQAGRQWNTSLVDELVDFGVEQRMAKPCVFCEMVDDKVTVILSVHVDDMVVTGKKVDCNRLFDAISGIF 197
            P+  ++ FS KTN+   + KFKAR V  G + I ++DY     P PS+ + K++L +  +  + L H+   QA+    L+  +F+++PAGCG  S K VK + A+YGLKQ+GRQW     D LV+ G+EQ  A PCVF +M D+ V +I+ ++VDD++V G   DC  L  +++  F
Sbjct:   12 PVSSKWCFSWKTNQEGKIDKFKARLVDRGFSHIPNVDYFHSSFPCPSSGSIKLMLAVANEKGMNLNHWDVKQAYTHAALEEEVFLRIPAGCGDKSHKIVKAEGAIYGLKQSGRQWGYHAADTLVENGLEQYKADPCVFRKMADEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKF 188          
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5K236_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K236_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 3.510e-37
Identity = 72/180 (40.00%), Postives = 107/180 (59.44%), Query Frame = 0
Query:    3 GHTKTGTPTVVSD-SEGKKPLRGQFTFSCKTNEMKDVVKFKARFVADGRAQIQDIDYDGVFPPIPSATAAKMVLPLEVQNDLQLFHFYTTQAFAQGRLDHTIFMKLPAGCGSLSGKTVKLDRALYGLKQAGRQWNTSLVDELVDFGVEQRMAKPCVFCEMVDDKVTVILSVHVDDMVVTG 181
            GH KTGT T V +  EG+K +  ++ FS KT E   +V FKAR VA G ++I  ID+       PSA +   V+ +  +    L H+   QA+   +L   I+++ P GCGS+SGK VK+ RALYGLKQ+G +W     D L++ G EQ   +PCV  ++VD +V  ++ ++VDD++V  
Sbjct:   41 GHDKTGTFTKVKELPEGRKAIGSKWVFSWKTKEKGLIVDFKARMVARGFSRIPGIDFHHSSSACPSAASINTVIAVATEKGKMLAHWNVKQAYINAKLKEEIYLRFPEGCGSMSGKVVKVKRALYGLKQSGHEWGFEAADALIENGYEQCKVEPCVVRKVVDGEVVGLIVIYVDDILVAA 220          
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5JI89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI89_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 3.870e-37
Identity = 78/195 (40.00%), Postives = 117/195 (60.00%), Query Frame = 0
Query:    3 GHTKTGTPTVVSD-SEGKKPLRGQFTFSCKTNEMKDVVKFKARFVADGRAQIQDIDYDGVFPPIPSATAAKMVLPLEVQNDLQLFHFYTTQAFAQGRLDHTIFMKLPAGCGSLSGKTVKLDRALYGLKQAGRQWNTSLVDELVDFGVEQRMAKPCVFCEMVDDKVTVILSVHVDDMVVTGKKVDCNRLFDAISGI 196
            GH +TGT T V +  EG+K +  ++ FS KTNE   +V FKAR VA G +QI  ID+       PSA + K V+ +  +   +L H+   QA+   +L   I+++ P GCGS+SGK VK++RALYGLKQ+GR+W     D L++ G EQ    PCVF ++VD +V  ++ ++VD+++V   + +     D   GI
Sbjct:  552 GHDRTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDNILVAADEGERLIAMDVEKGI 746          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUN0_9PHAE8.140e-4139.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE9.850e-4040.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE1.990e-3940.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE5.060e-3940.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE6.830e-3940.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZ24_9PHAE8.910e-3940.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK49_9PHAE9.990e-3939.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JG17_9PHAE8.410e-3839.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K236_9PHAE3.510e-3740.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI89_9PHAE3.870e-3740.00Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 11..185
e-value: 1.7E-35
score: 122.8
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 37..178
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 37..178

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13897contigH-paniculata_contig13897:3766..4362 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13897.2387.1mRNA_H-paniculata_contig13897.2387.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig13897 1032..5815 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig13897.2387.1 ID=prot_H-paniculata_contig13897.2387.1|Name=mRNA_H-paniculata_contig13897.2387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
MGGHTKTGTPTVVSDSEGKKPLRGQFTFSCKTNEMKDVVKFKARFVADGR
AQIQDIDYDGVFPPIPSATAAKMVLPLEVQNDLQLFHFYTTQAFAQGRLD
HTIFMKLPAGCGSLSGKTVKLDRALYGLKQAGRQWNTSLVDELVDFGVEQ
RMAKPCVFCEMVDDKVTVILSVHVDDMVVTGKKVDCNRLFDAISGIFQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like