mRNA_H-paniculata_contig13897.2387.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13897.2387.1
Unique NamemRNA_H-paniculata_contig13897.2387.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 3.890e-54
Identity = 100/207 (48.31%), Postives = 138/207 (66.67%), Query Frame = 2 
Query: 2018 RNFPMTNLGELTWYTGCSFNRDWSKDILTIDQTVFVDNLMERFEIPSVSELHAISLADLGPRRDYEEGGDWPFRAAVGCLLWLATMTRPDISNAVRAVTRHSHNPCTRH*AGVLKIMSYLKKISSLGLTYARGSKLNLGVYADADFAGKALNRRSVSEMAVMLGGVAVSFSSSTQRCVTVSFTEAEYVALEKGAEQRLSVKGVLAFL 2638
            + FP  NLGE  W+ GC+  RD     L I QT ++D+++ERF++ S S + A   ADLGP+R+ EEGG+WP R A+G ++W++T +RPD+S AVRAV RH+H P  RH   + KI+ YLK    LG+TY RGS L L VY DA +A    +RRSVS +A  +GG  VS  S TQ  V++S TEAEY+A  +G ++ L V+ VL+F+
Sbjct:  178 KKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPQREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKESLFVRAVLSFV 383
[Close]
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 3.370e-53
Identity = 99/207 (47.83%), Postives = 137/207 (66.18%), Query Frame = 2 
Query: 2018 RNFPMTNLGELTWYTGCSFNRDWSKDILTIDQTVFVDNLMERFEIPSVSELHAISLADLGPRRDYEEGGDWPFRAAVGCLLWLATMTRPDISNAVRAVTRHSHNPCTRH*AGVLKIMSYLKKISSLGLTYARGSKLNLGVYADADFAGKALNRRSVSEMAVMLGGVAVSFSSSTQRCVTVSFTEAEYVALEKGAEQRLSVKGVLAFL 2638
            + FP  NLGE  W+ GC+  RD     L I QT ++D+++ERF++ S S + A   ADLGP+R+ EEGG+WP R A+G ++W++T +RPD+S AVRAV RH+H P  RH   + KI+ YLK    LG+TY RGS L L VY DA +A    +RRSVS +A  +GG  VS  S TQ  V++S TEAEY+A  +G E+ L ++  L+F+
Sbjct:  242 KKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVEEALFLRAELSFV 447
[Close]
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 2.520e-52
Identity = 97/205 (47.32%), Postives = 138/205 (67.32%), Query Frame = 2 
Query: 2024 FPMTNLGELTWYTGCSFNRDWSKDILTIDQTVFVDNLMERFEIPSVSELHAISLADLGPRRDYEEGGDWPFRAAVGCLLWLATMTRPDISNAVRAVTRHSHNPCTRH*AGVLKIMSYLKKISSLGLTYARGSKLNLGVYADADFAGKALNRRSVSEMAVMLGGVAVSFSSSTQRCVTVSFTEAEYVALEKGAEQRLSVKGVLAFL 2638
            FP  +LGE  W+ GC+  RD     L I QT ++D+++ RF++ S S + A    D+GP+RD E GG+WP R A+G ++W++T +RPDIS AVRAV RH+H P  RH   ++KI++YLK+   LG+TY RGS L L VY DA +A  A +RRSVS +A  +GG  +S  S TQ  V++S TEAEY+A  +G ++ L V+ VL+F+
Sbjct:  220 FPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFI 423
[Close]
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 1.650e-50
Identity = 100/207 (48.31%), Postives = 138/207 (66.67%), Query Frame = 2 
Query: 2018 RNFPMTNLGELTWYTGCSFNRDWSKDILTIDQTVFVDNLMERFEIPSVSELHAISLADLGPRRDYEEGGDWPFRAAVGCLLWLATMTRPDISNAVRAVTRHSHNPCTRH*AGVLKIMSYLKKISSLGLTYARGSKLNLGVYADADFAGKALNRRSVSEMAVMLGGVAVSFSSSTQRCVTVSFTEAEYVALEKGAEQRLSVKGVLAFL 2638
            + FP  NLGE  W+ GC+  RD     L I QT ++D+++ERF++ S S + A   ADLGP+R+ EEGG+WP R A+G ++W++T +RPD+S AVRAV RH+H P  RH   + KI+ YLK    LG+TY RGS L L VY DA +A    +RRSVS +A  +GG  VS  S TQ  V++S TEAEY+A  +G ++ L V+ VL+F+
Sbjct:  955 KKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 1160
[Close]
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 2.550e-50
Identity = 100/207 (48.31%), Postives = 138/207 (66.67%), Query Frame = 2 
Query: 2018 RNFPMTNLGELTWYTGCSFNRDWSKDILTIDQTVFVDNLMERFEIPSVSELHAISLADLGPRRDYEEGGDWPFRAAVGCLLWLATMTRPDISNAVRAVTRHSHNPCTRH*AGVLKIMSYLKKISSLGLTYARGSKLNLGVYADADFAGKALNRRSVSEMAVMLGGVAVSFSSSTQRCVTVSFTEAEYVALEKGAEQRLSVKGVLAFL 2638
            + FP  NLGE  W+ GC+  RD     L I QT ++D+++ERF++ S S + A   ADLGP+R+ EEGG+WP R A+G ++W++T +RPD+S AVRAV RH+H P  RH   + KI+ YLK    LG+TY RGS L L VY DA +A    +RRSVS +A  +GG  VS  S TQ  V++S TEAEY+A  +G ++ L V+ VL+F+
Sbjct: 1334 KKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 1539
[Close]
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 2.680e-50
Identity = 100/207 (48.31%), Postives = 138/207 (66.67%), Query Frame = 2 
Query: 2018 RNFPMTNLGELTWYTGCSFNRDWSKDILTIDQTVFVDNLMERFEIPSVSELHAISLADLGPRRDYEEGGDWPFRAAVGCLLWLATMTRPDISNAVRAVTRHSHNPCTRH*AGVLKIMSYLKKISSLGLTYARGSKLNLGVYADADFAGKALNRRSVSEMAVMLGGVAVSFSSSTQRCVTVSFTEAEYVALEKGAEQRLSVKGVLAFL 2638
            + FP  NLGE  W+ GC+  RD     L I QT ++D+++ERF++ S S + A   ADLGP+R+ EEGG+WP R A+G ++W++T +RPD+S AVRAV RH+H P  RH   + KI+ YLK    LG+TY RGS L L VY DA +A    +RRSVS +A  +GG  VS  S TQ  V++S TEAEY+A  +G ++ L V+ VL+F+
Sbjct: 1354 KKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 1559
[Close]
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 2.820e-50
Identity = 100/207 (48.31%), Postives = 138/207 (66.67%), Query Frame = 2 
Query: 2018 RNFPMTNLGELTWYTGCSFNRDWSKDILTIDQTVFVDNLMERFEIPSVSELHAISLADLGPRRDYEEGGDWPFRAAVGCLLWLATMTRPDISNAVRAVTRHSHNPCTRH*AGVLKIMSYLKKISSLGLTYARGSKLNLGVYADADFAGKALNRRSVSEMAVMLGGVAVSFSSSTQRCVTVSFTEAEYVALEKGAEQRLSVKGVLAFL 2638
            + FP  NLGE  W+ GC+  RD     L I QT ++D+++ERF++ S S + A   ADLGP+R+ EEGG+WP R A+G ++W++T +RPD+S AVRAV RH+H P  RH   + KI+ YLK    LG+TY RGS L L VY DA +A    +RRSVS +A  +GG  VS  S TQ  V++S TEAEY+A  +G ++ L V+ VL+F+
Sbjct: 1497 KKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 1702
[Close]
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 3.170e-50
Identity = 100/205 (48.78%), Postives = 137/205 (66.83%), Query Frame = 2 
Query: 2024 FPMTNLGELTWYTGCSFNRDWSKDILTIDQTVFVDNLMERFEIPSVSELHAISLADLGPRRDYEEGGDWPFRAAVGCLLWLATMTRPDISNAVRAVTRHSHNPCTRH*AGVLKIMSYLKKISSLGLTYARGSKLNLGVYADADFAGKALNRRSVSEMAVMLGGVAVSFSSSTQRCVTVSFTEAEYVALEKGAEQRLSVKGVLAFL 2638
            FP  NLGE  W+ GC+  RD     L I QT ++D+++ERF++ S S + A   ADLGP+R+ EEGG+WP R A+G ++W++T +RPD+S AVRAV RH+H P  RH   + KI+ YLK    LG+TY RGS L L VY DA +A    +RRSVS +A  +GG  VS  S TQ  V++S TEAEY+A  +G ++ L V+ VL+F+
Sbjct:  894 FPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVVRHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 1097
[Close]
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 5.280e-50
Identity = 98/207 (47.34%), Postives = 135/207 (65.22%), Query Frame = 2 
Query: 2018 RNFPMTNLGELTWYTGCSFNRDWSKDILTIDQTVFVDNLMERFEIPSVSELHAISLADLGPRRDYEEGGDWPFRAAVGCLLWLATMTRPDISNAVRAVTRHSHNPCTRH*AGVLKIMSYLKKISSLGLTYARGSKLNLGVYADADFAGKALNRRSVSEMAVMLGGVAVSFSSSTQRCVTVSFTEAEYVALEKGAEQRLSVKGVLAFL 2638
            + FP  NLGE  W+ GC+  RD     L I QT ++D+++ RF++ S S + A   ADLGP+R+ EEGG+WP R A+G ++W++T +RPD+S AVRAV RH+H P  RH   + KI+ YLK    LG+TY RGS L L VY DA +A    +RRSVS +A  +GG  VS  S TQ  V++S  EAEY+A  +G ++ L V+ VL F+
Sbjct:  466 KKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFV 671
[Close]
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.650e-49
Identity = 97/207 (46.86%), Postives = 137/207 (66.18%), Query Frame = 2 
Query: 2018 RNFPMTNLGELTWYTGCSFNRDWSKDILTIDQTVFVDNLMERFEIPSVSELHAISLADLGPRRDYEEGGDWPFRAAVGCLLWLATMTRPDISNAVRAVTRHSHNPCTRH*AGVLKIMSYLKKISSLGLTYARGSKLNLGVYADADFAGKALNRRSVSEMAVMLGGVAVSFSSSTQRCVTVSFTEAEYVALEKGAEQRLSVKGVLAFL 2638
            + FP  NLGE  W+ GC+  RD     L I QT ++D+++ERF++ S S + A   ADLGP+R+ ++GG+WP R AVG ++W++T +RPD+S AVRAV RH+H P  RH   + KI+ YLK    LG+TY RGS L L VY DA +A    +RRSVS +A  +GG  VS  S  +  V++S TEAEY+A  +G ++ L V+ VL+F+
Sbjct:  546 KKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDARYADTE-DRRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 751
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13897.2387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVD4_9PHAE3.890e-5448.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTL3_9PHAE3.370e-5347.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE2.520e-5247.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.650e-5048.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.550e-5048.31Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.680e-5048.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.820e-5048.31Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JRE9_9PHAE3.170e-5048.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K274_9PHAE5.280e-5047.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQN6_9PHAE1.650e-4946.86Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13897contigH-paniculata_contig13897:1032..5815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score112.1
Seed ortholog evalue3.1e-22
Seed eggNOG ortholog6334.EFV48939
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,40FC4@6231,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelNematoda
Best eggNOG OGNA|NA|NA
Exons3
Model size3486
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13897.2387.1prot_H-paniculata_contig13897.2387.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13897 3766..4362 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929103.6969876-UTR-H-paniculata_contig13897:1031..16841622929103.6969876-UTR-H-paniculata_contig13897:1031..1684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13897 1032..1684 +
1691480732.8087878-UTR-H-paniculata_contig13897:1031..16841691480732.8087878-UTR-H-paniculata_contig13897:1031..1684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13897 1032..1684 +
1622929103.7140706-UTR-H-paniculata_contig13897:2225..22831622929103.7140706-UTR-H-paniculata_contig13897:2225..2283Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13897 2226..2283 +
1691480732.82665-UTR-H-paniculata_contig13897:2225..22831691480732.82665-UTR-H-paniculata_contig13897:2225..2283Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13897 2226..2283 +
1622929103.725528-UTR-H-paniculata_contig13897:3040..37651622929103.725528-UTR-H-paniculata_contig13897:3040..3765Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13897 3041..3765 +
1691480732.8360584-UTR-H-paniculata_contig13897:3040..37651691480732.8360584-UTR-H-paniculata_contig13897:3040..3765Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13897 3041..3765 +
1622929103.750639-UTR-H-paniculata_contig13897:4362..58151622929103.750639-UTR-H-paniculata_contig13897:4362..5815Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13897 4363..5815 +
1691480732.855004-UTR-H-paniculata_contig13897:4362..58151691480732.855004-UTR-H-paniculata_contig13897:4362..5815Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13897 4363..5815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929103.7353814-CDS-H-paniculata_contig13897:3765..43621622929103.7353814-CDS-H-paniculata_contig13897:3765..4362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13897 3766..4362 +
1691480732.8440745-CDS-H-paniculata_contig13897:3765..43621691480732.8440745-CDS-H-paniculata_contig13897:3765..4362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13897 3766..4362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13897.2387.1

>prot_H-paniculata_contig13897.2387.1 ID=prot_H-paniculata_contig13897.2387.1|Name=mRNA_H-paniculata_contig13897.2387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
MGGHTKTGTPTVVSDSEGKKPLRGQFTFSCKTNEMKDVVKFKARFVADGR
AQIQDIDYDGVFPPIPSATAAKMVLPLEVQNDLQLFHFYTTQAFAQGRLD
HTIFMKLPAGCGSLSGKTVKLDRALYGLKQAGRQWNTSLVDELVDFGVEQ
RMAKPCVFCEMVDDKVTVILSVHVDDMVVTGKKVDCNRLFDAISGIFQ*
back to top

mRNA from alignment at H-paniculata_contig13897:1032..5815+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13897.2387.1 ID=mRNA_H-paniculata_contig13897.2387.1|Name=mRNA_H-paniculata_contig13897.2387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4784bp|location=Sequence derived from alignment at H-paniculata_contig13897:1032..5815+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGAAACCCCAGTCACGTTCATTACTGAGCTCGAAGTTCTCGCCGAACGCC
TCACTGCAAATGCTGCGTGATCACGCAAGAGTCAAGATTTCACTCGCTTC
TTGTCCGCACTTCCTTCCCCCGAATATGAATAGCAAATCGAGTTTCTAAC
AAGGGAAAGGATGTCACGAGGGAATTATTTTAGGGAGTGTCAGAGAGAAC
TTCGCGACCCTTCAAGCCAGGACAGGCGAGAACAAGTATAGGGAAGGTAA
GGACAGCAGACAAGCTTTCGTAGCCGACGGGCAGGACAAGTCAGGTGGGC
AAGCCGGGTGGAGCGGTAAGTCGGGCGGCGGGCAGACCGATTTCAAGGAC
TTTTTCAAGAAGAAAGGAACACTGTCCAAGCACAGCAATTCCGCGCCAGC
GTCCACAAATCCAGCAACCGCGTGTACGTCTACAAGCTCCAAGTGCAGGG
CATGTCAAAAGGGAGGGCACAAAACCGAGCGTTGCCCTGACCATGTGTGT
CGAGGATGCGGGGGAAAGGGGCATAGCTCGGACGTGTGCCCTAGCTCGCA
TGAGACGCCGTGTTGGCCTTTGAAGAGCAAGAGTGTTCTGGTGAAGAAAG
TCACGCTTTCATCGCTGAAGACTTCCCAGGCCAGTTGGGAATTTATAGAT
GGGGTAGGTTGGGTGAGCTTGGCATTGGTGCAGGAAAAGAGTCGTGGATC
AGTGATAGTGGGGTCACTGGTCATGTAACACCATTCGCGATTCACTTGTC
TAGCTACCGACAAGTAAAGAGACGCTACAGATTGCGTCGGGTCGGATGAT
CCTGATTATTGGTCGTGGTAACCTGAGCGAAAATTTCAGAAGGAATGATG
GAAATATGTCTCGCGGTACTAAATGTTGCGCATGCACCCGAATTACAATA
TAGTCTATTTTCACTGAGGAGAGTGGTGGATGTCGAGCACAAGCATATTG
GAGATTAGGAAGAAATTAATGTTCACTTGAGATTTGGAGGAATACTGGAC
AGACCTTCGACTGGCCGATTGAACGATCTGCATGGAAGAAGAAACGACCT
ACTTGTTAGCCCCTCTGAGAACGCCAACGCCGTATGTGCTCCGGGCAGTG
CGCCCGTAAAATCCGCTTCCCCGTAGACATCAACGATTTTCACTGCTCGC
ACGGCCATTCTTTCGACGTGAATCTACGAAAACCTGCACCTCAGATGGGA
GTGGAACTGAAGGGGGAGCTTCGCGGATGCAAGGGTTGTTCGATGCACAA
AGGTACGGGGAAGCCAATCGAGAGGTCTACACGCTCGCGGGGAGATAACA
AACTGGGCAGGGTTTTTGTCGATGTATCGGGTCCAAAACCAGTCGAATCC
TGAGGGGGTATGAAGTACACACTCTAATTATTAGAGATAATTATACAAGG
TAAATGTCGATCTATTTTCTGAGGAAAAAGAACGACGGGGCTGAGAGTTT
CAAGACGTGGTTGGTAGACGTGCGGGCAGACGGGGTTCCTTCGGAGGTCG
CGATAATACGGTTAGACAACGGAGGAGAGTGTTTCGGGGGGAAGTTTGAC
AAGCTCCGTAATGCGCGTAACATCACCCAGGGATACACTGCCCCTGGAAG
CCCCGAGTTTAGTGGCGTAACGAAACGTGGCTTGTCTGCTATAAAGATGG
CTGGACTAGCCGCTACAGTACAAGTGTAGGTGCTTTTTCACGATTCTGTC
ATCCTTGACGAAAAATCTCGCTGGACCGAAGCTTTTAACTGGGTGTTGCG
GCACGATGAACCGTACCGCAACAGGGGCAAAGCCTGGTAACCTGTCGTCG
TACCAGATGTGGCGTGCCCTCCGCCGTTTTGTCTTCCCCCGTTTCTCAAG
CCACGAAACTGTAAAGGGGGAATAAGTTAGAACCGAAAGCCAGATCGTGT
TTCTACCTTGGATCGCAACGCAACCATCCCACGGATTCTATGCGCGTGCT
TACTGAAACGGGTGCCGTTGTAAACTCGCCATGTCATTTGTGCTCTTGTG
CCTGCACAGTCTACTCTCCCCTGTGCAGTCGAAGAGCCTGTCACCGGCAG
AAGAAGGTGGGGAGGAGGAATATGGAATATGTATATTTACCAGCGCCGAC
AGCTTTGCAGGAAGCCGGGAGAGAGGTGGCGACGTCATCTCCCCCAACCG
CAGCTTCTTTGCCGTTGACTGCTGCAACATATTCCTCATCTGCATCGTCG
TCTACCTCGACAGCGTCATCGTCTACCTCGACAGCTGCATTGTCTTCTTT
GACCTCTGTGACATTCCTCGTGTCTGCGCGGGAAATCAGGAGAGATTTTC
CGTCGATGCCCGCCTCTGCTTCTGGATCTTCGTCGTCTACAAGTTCGCAA
GACAATCTCGACAACGGAGCGATTTCTGGGAAGAGTCCCCCTCCCGCCCT
CGCGGATAGAGAGGCGCGCCACCTTGAAGCATATAACTTGTCGGCACCCG
GCCCGATCAAATAGGCGAGGACGAGAGAAGAACAGCGGAGGATGCAGGAA
GGAAAGCGCGAAGTTTGCTCGCGGAGGATGCTGGGCCCGAGCTAGAGTTC
AAGAGTTCAAGATGTCCGACATCTTGGAGGACGAGGCTGCTTTTCCGGTG
ACAGGGGAGTTGAGGTTTGGGAGTTGGGTTTTGAGCCTTTTTTGCTGAAT
GATGCGGAGCCTTTACCTCGTAATATAGATTATGTGCGACGGTCAAAATA
TCGTCCGTTTTGGGAGGAGTCGATTGAAAGAGAAATGGGAGGTCATACTA
AGACGGGAACTCCTACTGTAGTTAGTGACAGCGAAGGGAAGAAACCGTTG
AGGGGGCAGTTCACTTTTTCGTGCAAAACTAACGAGATGAAGGATGTCGT
GAAGTTCAAAGCCAGATTCGTAGCCGATGGAAGGGCACAAATCCAAGACA
TAGACTATGATGGAGTTTTTCCACCTATCCCTTCCGCCACTGCTGCAAAG
ATGGTGTTACCCCTAGAGGTGCAGAATGATCTACAATTGTTTCATTTTTA
CACGACTCAGGCGTTTGCTCAGGGAAGATTAGATCATACTATATTTATGA
AACTACCTGCTGGGTGTGGTTCATTGTCGGGGAAGACTGTGAAATTGGAC
AGAGCTTTGTACGGTCTTAAACAGGCTGGTAGGCAGTGGAATACATCTTT
GGTGGACGAGTTGGTGGATTTTGGGGTGGAACAACGCATGGCTAAACCCT
GCGTGTTTTGTGAGATGGTAGACGACAAGGTTACCGTCATCCTGTCAGTA
CATGTGGATGACATGGTAGTGACGGGTAAGAAGGTTGATTGCAACAGGCT
TTTCGATGCTATCTCAGGAATTTTCCAATGACCAATCTAGGGGAATTGAC
CTGGTACACCGGTTGTTCGTTCAATCGAGATTGGAGTAAGGATATTTTGA
CGATAGACCAAACTGTTTTTGTCGACAACCTCATGGAGCGATTCGAAATC
CCCTCTGTGTCTGAACTTCATGCGATATCACTTGCTGACCTAGGTCCGCG
GCGTGATTATGAGGAAGGCGGAGACTGGCCGTTCAGGGCGGCAGTTGGAT
GCCTTCTCTGGCTAGCTACGATGACGCGGCCGGATATCTCTAATGCTGTG
CGGGCTGTGACCCGACATTCTCACAACCCTTGCACGCGTCACTGAGCTGG
GGTTTTGAAAATTATGTCGTATCTGAAAAAGATCAGTTCTTTGGGACTAA
CCTACGCGCGAGGGTCGAAACTGAATCTGGGCGTATACGCTGATGCTGAT
TTCGCGGGAAAAGCTTTAAATAGGCGTTCTGTGTCTGAGATGGCTGTGAT
GTTAGGAGGCGTTGCAGTCAGCTTTAGCAGCAGTACGCAGCGCTGTGTCA
CCGTTTCGTTTACCGAGGCTGAGTACGTGGCTCTTGAGAAGGGAGCTGAA
CAGAGGTTGTCCGTGAAGGGTGTGCTTGCATTCTTGCAACAGAATTTTAC
GGTATCGGTATTATGTTGTTCGAGGACAATGCTGGGGCACAATCGTTGGC
TGAGAACCCGCGGAGTTCTAGTCGGAGTAGACGTATCGACGTAAGATACC
ACTTCATTCGTGATGTAGTAAGGGCTGGGAAGGTGTCGGTCTATCATGTC
GATTCAAACGACCAACACACTGATATCCTTACCAAAGCTCTTCGTTAACG
GAGTTTTAGACATTACAGGAACATCTTGATGAAAATGTGTCCAACTGAGT
TTTTGCGCCGAACGTTTACTGACCATGATTACGTAAAGCAGTCGGAAACT
GATTCAGCTAGCACCATACGCTATTGCTGGGCGTAGGTTCTGGATTGGCT
GTTCAGATTTCCCACTGTCTTGGTCCGTATTTGATAGGCGCTGAAAAGTG
GAGGTGTTTTGCCCGGCCGCGGGGTTTTTCCTTCCGTGTTAATTTGTTGT
TGCGGATGGTATCCTTCCCTTTCTTCGTCTTATCTTAATCAAATACGGGT
AACGAGAGACGGTGTGCGAGTGTGTTGTTCTCCTATCTGAGATAGAGGAC
TGGGTCAGAGATCGACCGTTGTGACGCTATGCTAGAATATCGTTCGTAGC
CGTTTTTCGATCAAATTTGACAGTCAGATGGATATATGTTCCTGTTGGTC
TGGTTCGGTTCCGTCTGTGTTAGGTGCAGCGACATTGCTGGCTGAAGCAG
CCCGGCTTTGCTGGAGGGTGAAGCTTCCCATACCGTCGCTGACATCTGTT
TTCCTAAACGGGACCTGTAATAAAGAAAGTAATATATAATCCTCTTTGTG
TGTCTAGGCATCCATAGGCTTCAGGAGACTAGGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13897:1032..5815+

>mRNA_H-paniculata_contig13897.2387.1 ID=mRNA_H-paniculata_contig13897.2387.1|Name=mRNA_H-paniculata_contig13897.2387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig13897:1032..5815+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGGTCATACTAAGACGGGAACTCCTACTGTAGTTAGTGACAGCGA
AGGGAAGAAACCGTTGAGGGGGCAGTTCACTTTTTCGTGCAAAACTAACG
AGATGAAGGATGTCGTGAAGTTCAAAGCCAGATTCGTAGCCGATGGAAGG
GCACAAATCCAAGACATAGACTATGATGGAGTTTTTCCACCTATCCCTTC
CGCCACTGCTGCAAAGATGGTGTTACCCCTAGAGGTGCAGAATGATCTAC
AATTGTTTCATTTTTACACGACTCAGGCGTTTGCTCAGGGAAGATTAGAT
CATACTATATTTATGAAACTACCTGCTGGGTGTGGTTCATTGTCGGGGAA
GACTGTGAAATTGGACAGAGCTTTGTACGGTCTTAAACAGGCTGGTAGGC
AGTGGAATACATCTTTGGTGGACGAGTTGGTGGATTTTGGGGTGGAACAA
CGCATGGCTAAACCCTGCGTGTTTTGTGAGATGGTAGACGACAAGGTTAC
CGTCATCCTGTCAGTACATGTGGATGACATGGTAGTGACGGGTAAGAAGG
TTGATTGCAACAGGCTTTTCGATGCTATCTCAGGAATTTTCCAATGAATG
GGAGGTCATACTAAGACGGGAACTCCTACTGTAGTTAGTGACAGCGAAGG
GAAGAAACCGTTGAGGGGGCAGTTCACTTTTTCGTGCAAAACTAACGAGA
TGAAGGATGTCGTGAAGTTCAAAGCCAGATTCGTAGCCGATGGAAGGGCA
CAAATCCAAGACATAGACTATGATGGAGTTTTTCCACCTATCCCTTCCGC
CACTGCTGCAAAGATGGTGTTACCCCTAGAGGTGCAGAATGATCTACAAT
TGTTTCATTTTTACACGACTCAGGCGTTTGCTCAGGGAAGATTAGATCAT
ACTATATTTATGAAACTACCTGCTGGGTGTGGTTCATTGTCGGGGAAGAC
TGTGAAATTGGACAGAGCTTTGTACGGTCTTAAACAGGCTGGTAGGCAGT
GGAATACATCTTTGGTGGACGAGTTGGTGGATTTTGGGGTGGAACAACGC
ATGGCTAAACCCTGCGTGTTTTGTGAGATGGTAGACGACAAGGTTACCGT
CATCCTGTCAGTACATGTGGATGACATGGTAGTGACGGGTAAGAAGGTTG
ATTGCAACAGGCTTTTCGATGCTATCTCAGGAATTTTCCAATGA
back to top