prot_H-paniculata_contig13224.2024.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig13224.2024.1
Unique Nameprot_H-paniculata_contig13224.2024.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length93
Homology
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BLAST of mRNA_H-paniculata_contig13224.2024.1 vs. uniprot
Match: D7FXN7_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN7_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.140e-32
Identity = 61/93 (65.59%), Postives = 74/93 (79.57%), Query Frame = 0 
Query:    1 CLGDTPIAYWYSPVLTLAACYVLVDAYEVIFVMWRQIIMMCHLLTVASSLGRAFLKLVILAFLYSNYSTDLFVTCARFYLGLVGLLELLKFTP 93
            C GD+ IAYWYS V TLA CYVL+D Y++IFV WR++ + CHLLTV S+LGRAFLK+V  A+LY+NY  D+FV  AR Y GLV LLEL+KFTP
Sbjct:  413 CAGDSDIAYWYSAVFTLAGCYVLIDLYQIIFVTWRKVFIQCHLLTVISTLGRAFLKVVAFAWLYTNYPNDVFVNSARLYYGLVALLELVKFTP 505
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13224.2024.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXN7_ECTSI1.140e-3265.591,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 71..89
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 14..34
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 90..93
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 66..70
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..13
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 41..65
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 35..40
NoneNo IPR availableTMHMMTMhelixcoord: 10..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13224contigH-paniculata_contig13224:6388..6918 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13224.2024.1mRNA_H-paniculata_contig13224.2024.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig13224 6388..6920 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig13224.2024.1 ID=prot_H-paniculata_contig13224.2024.1|Name=mRNA_H-paniculata_contig13224.2024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
CLGDTPIAYWYSPVLTLAACYVLVDAYEVIFVMWRQIIMMCHLLTVASSL
GRAFLKLVILAFLYSNYSTDLFVTCARFYLGLVGLLELLKFTP
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