mRNA_H-paniculata_contig13224.2024.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13224.2024.1
Unique NamemRNA_H-paniculata_contig13224.2024.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig13224.2024.1 vs. uniprot
Match: D7FXN7_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN7_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.140e-32
Identity = 61/93 (65.59%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    1 CLGDTPIAYWYSPVLTLAACYVLVDAYEVIFVMWRQIIMMCHLLTVASSLGRAFLKLVILAFLYSNYSTDLFVTCARFYLGLVGLLELLKFTP 279
            C GD+ IAYWYS V TLA CYVL+D Y++IFV WR++ + CHLLTV S+LGRAFLK+V  A+LY+NY  D+FV  AR Y GLV LLEL+KFTP
Sbjct:  413 CAGDSDIAYWYSAVFTLAGCYVLIDLYQIIFVTWRKVFIQCHLLTVISTLGRAFLKVVAFAWLYTNYPNDVFVNSARLYYGLVALLELVKFTP 505
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13224.2024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXN7_ECTSI1.140e-3265.591,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13224contigH-paniculata_contig13224:6388..6920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue5.6e-27
Seed eggNOG ortholog2880.D7FXN7
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929047.8173528-CDS-H-paniculata_contig13224:6387..66171622929047.8173528-CDS-H-paniculata_contig13224:6387..6617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13224 6388..6617 +
1691480711.5075264-CDS-H-paniculata_contig13224:6387..66171691480711.5075264-CDS-H-paniculata_contig13224:6387..6617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13224 6388..6617 +
1622929047.8337367-CDS-H-paniculata_contig13224:6869..69181622929047.8337367-CDS-H-paniculata_contig13224:6869..6918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13224 6870..6918 +
1691480711.5177448-CDS-H-paniculata_contig13224:6869..69181691480711.5177448-CDS-H-paniculata_contig13224:6869..6918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13224 6870..6918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13224.2024.1prot_H-paniculata_contig13224.2024.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13224 6388..6918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13224.2024.1

>prot_H-paniculata_contig13224.2024.1 ID=prot_H-paniculata_contig13224.2024.1|Name=mRNA_H-paniculata_contig13224.2024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
CLGDTPIAYWYSPVLTLAACYVLVDAYEVIFVMWRQIIMMCHLLTVASSL
GRAFLKLVILAFLYSNYSTDLFVTCARFYLGLVGLLELLKFTP
back to top

mRNA from alignment at H-paniculata_contig13224:6388..6920+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13224.2024.1 ID=mRNA_H-paniculata_contig13224.2024.1|Name=mRNA_H-paniculata_contig13224.2024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=533bp|location=Sequence derived from alignment at H-paniculata_contig13224:6388..6920+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCCTGGGCGACACGCCCATCGCCTATTGGTATTCCCCTGTCCTCACGCT
AGCTGCTTGCTATGTCTTGGTGGATGCGTACGAGGTTATCTTCGTCATGT
GGCGCCAGATCATCATGATGTGCCATCTGCTGACGGTTGCGTCTTCGCTT
GGGAGAGCGTTCCTCAAGCTGGTCATTCTAGCGTTTCTCTACAGCAATTA
CTCAACAGATTTGTTCGTCACTTGTGCAAGGTGTGCGAGGGGGGTGAGCA
AGACGCGTGGGTCGTGAATTACTGCGGCTATTAATTTAGCTTAATTTAGC
TGGCATCATTTTAGGATTTGCTCAGAAACTGCTGAATTTAGCATGTACCA
GGTAGGATATTTTGTGTGGTTGACGTGAAAAATGCTCGTAATATCCAAGC
AATATACATTAGTACTGTAATGTCTCTACTGATAAAATATTCTGGTTGTG
TTGTTTCTATATACCTGTGTGTCGTGTCTCAGGTTTTACCTTGGACTTGT
GGGACTGCTAGAGTTGCTCAAGTTCACACCGCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13224:6388..6920+

>mRNA_H-paniculata_contig13224.2024.1 ID=mRNA_H-paniculata_contig13224.2024.1|Name=mRNA_H-paniculata_contig13224.2024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig13224:6388..6920+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCCTGGGCGACACGCCCATCGCCTATTGGTATTCCCCTGTCCTCACGCT
AGCTGCTTGCTATGTCTTGGTGGATGCGTACGAGGTTATCTTCGTCATGT
GGCGCCAGATCATCATGATGTGCCATCTGCTGACGGTTGCGTCTTCGCTT
GGGAGAGCGTTCCTCAAGCTGGTCATTCTAGCGTTTCTCTACAGCAATTA
CTCAACAGATTTGTTCGTCACTTGTGCAAGTGCCTGGGCGACACGCCCAT
CGCCTATTGGTATTCCCCTGTCCTCACGCTAGCTGCTTGCTATGTCTTGG
TGGATGCGTACGAGGTTATCTTCGTCATGTGGCGCCAGATCATCATGATG
TGCCATCTGCTGACGGTTGCGTCTTCGCTTGGGAGAGCGTTCCTCAAGCT
GGTCATTCTAGCGTTTCTCTACAGCAATTACTCAACAGATTTGTTCGTCA
CTTGTGCAAGGTTTTACCTTGGACTTGTGGGACTGCTAGAGTTGCTCAAG
TTCACACCGGTTTTACCTTGGACTTGTGGGACTGCTAGAGTTGCTCAAGT
TCACACCG
back to top