prot_H-paniculata_contig12803.1764.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig12803.1764.1
Unique Name	prot_H-paniculata_contig12803.1764.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	139

Homology

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BLAST of mRNA_H-paniculata_contig12803.1764.1 vs. uniprot
Match: D8LTC0_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTC0_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 4.490e-47
Identity = 86/124 (69.35%), Postives = 94/124 (75.81%), Query Frame = 0

Query:   18 KGRHERFGVFLRKRTTLAMEGFLCMVALAIVAMLSLFLEPYSDGWATSRGAPRG--GQCFMMMEWKLLLPFCVLQTVLFGILGFRLSNVHDLLNISSELRVNFMLYLFFGLPYFVLQLHYRYRT 139
            + R E+FGVFLRKRTTLAME FLC VA  I+  LS  L PYS G   +     G  G C+MMMEWK LLPFCVLQTV+FG+LG +L NV DLLNISSELRVNFMLYL F LPYFVL LHYRYRT
Sbjct:   16 RARQEKFGVFLRKRTTLAMEAFLCTVAACILVALSQVLPPYSRGPTVTDAGAGGXXGACYMMMEWKFLLPFCVLQTVIFGVLGCKLRNVDDLLNISSELRVNFMLYLLFCLPYFVLTLHYRYRT 139

[Close]

BLAST of mRNA_H-paniculata_contig12803.1764.1 vs. uniprot
Match: A0A6H5JQM7_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM7_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 5.010e-34
Identity = 69/104 (66.35%), Postives = 76/104 (73.08%), Query Frame = 0

Query:   36 MEGFLCMVALAIVAMLSLFLEPYSDGWATSRGAPRG--GQCFMMMEWKLLLPFCVLQTVLFGILGFRLSNVHDLLNISSELRVNFMLYLFFGLPYFVLQLHYRY 137
            ME FLC VA  I+  LS  L PYS G   +     G  G C+MMMEWK LLPFCVLQTV+FG+LG +L+NV DLLNISSELRVNFMLYL F  PYFVL LHYRY
Sbjct:    1 MEAFLCTVAACILVALSQMLPPYSRGPTVTDAGAGGXXGACYMMMEWKFLLPFCVLQTVIFGVLGCKLANVDDLLNISSELRVNFMLYLLFCFPYFVLTLHYRY 104

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig12803.1764.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig12803.1764.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LTC0_ECTSI	4.490e-47	69.35	RGS domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5JQM7_9PHAE	5.010e-34	66.35	RGS domain-containing protein n=1 Tax=Ectocarpus s...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 136..139
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 114..135
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 56..81
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 103..113
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 34..55
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 82..102
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..33
None	No IPR available	TMHMM	TMhelix		coord: 116..135
None	No IPR available	TMHMM	TMhelix		coord: 33..55
None	No IPR available	TMHMM	TMhelix		coord: 82..101

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig12803	contig	H-paniculata_contig12803:452..2263 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig12803.1764.1	mRNA_H-paniculata_contig12803.1764.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig12803 452..2263 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig12803.1764.1 ID=prot_H-paniculata_contig12803.1764.1|Name=mRNA_H-paniculata_contig12803.1764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
WGAPFALRSLRVIIATNKGRHERFGVFLRKRTTLAMEGFLCMVALAIVAM
LSLFLEPYSDGWATSRGAPRGGQCFMMMEWKLLLPFCVLQTVLFGILGFR
LSNVHDLLNISSELRVNFMLYLFFGLPYFVLQLHYRYRT