mRNA_H-paniculata_contig12803.1764.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12803.1764.1
Unique NamemRNA_H-paniculata_contig12803.1764.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12803.1764.1 vs. uniprot
Match: D8LTC0_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTC0_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 4.490e-47
Identity = 86/124 (69.35%), Postives = 94/124 (75.81%), Query Frame = 1 
Query:   52 KGRHERFGVFLRKRTTLAMEGFLCMVALAIVAMLSLFLEPYSDGWATSRGAPRG--GQCFMMMEWKLLLPFCVLQTVLFGILGFRLSNVHDLLNISSELRVNFMLYLFFGLPYFVLQLHYRYRT 417
            + R E+FGVFLRKRTTLAME FLC VA  I+  LS  L PYS G   +     G  G C+MMMEWK LLPFCVLQTV+FG+LG +L NV DLLNISSELRVNFMLYL F LPYFVL LHYRYRT
Sbjct:   16 RARQEKFGVFLRKRTTLAMEAFLCTVAACILVALSQVLPPYSRGPTVTDAGAGGXXGACYMMMEWKFLLPFCVLQTVIFGVLGCKLRNVDDLLNISSELRVNFMLYLLFCLPYFVLTLHYRYRT 139
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BLAST of mRNA_H-paniculata_contig12803.1764.1 vs. uniprot
Match: A0A6H5JQM7_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM7_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 5.010e-34
Identity = 69/104 (66.35%), Postives = 76/104 (73.08%), Query Frame = 1 
Query:  106 MEGFLCMVALAIVAMLSLFLEPYSDGWATSRGAPRG--GQCFMMMEWKLLLPFCVLQTVLFGILGFRLSNVHDLLNISSELRVNFMLYLFFGLPYFVLQLHYRY 411
            ME FLC VA  I+  LS  L PYS G   +     G  G C+MMMEWK LLPFCVLQTV+FG+LG +L+NV DLLNISSELRVNFMLYL F  PYFVL LHYRY
Sbjct:    1 MEAFLCTVAACILVALSQMLPPYSRGPTVTDAGAGGXXGACYMMMEWKFLLPFCVLQTVIFGVLGCKLANVDDLLNISSELRVNFMLYLLFCFPYFVLTLHYRY 104
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12803.1764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTC0_ECTSI4.490e-4769.35RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQM7_9PHAE5.010e-3466.35RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12803contigH-paniculata_contig12803:452..2263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionRGS domain
Ec32 orthologEc-12_006000.1
Exons3
Model size417
Cds size417
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12803.1764.1prot_H-paniculata_contig12803.1764.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12803 452..2263 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929001.7232535-CDS-H-paniculata_contig12803:451..5981622929001.7232535-CDS-H-paniculata_contig12803:451..598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12803 452..598 -
1691480697.3520875-CDS-H-paniculata_contig12803:451..5981691480697.3520875-CDS-H-paniculata_contig12803:451..598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12803 452..598 -
1622929001.735654-CDS-H-paniculata_contig12803:852..10671622929001.735654-CDS-H-paniculata_contig12803:852..1067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12803 853..1067 -
1691480697.3611817-CDS-H-paniculata_contig12803:852..10671691480697.3611817-CDS-H-paniculata_contig12803:852..1067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12803 853..1067 -
1622929001.7483814-CDS-H-paniculata_contig12803:2208..22631622929001.7483814-CDS-H-paniculata_contig12803:2208..2263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12803 2209..2263 -
1691480697.3716886-CDS-H-paniculata_contig12803:2208..22631691480697.3716886-CDS-H-paniculata_contig12803:2208..2263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12803 2209..2263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12803.1764.1

>prot_H-paniculata_contig12803.1764.1 ID=prot_H-paniculata_contig12803.1764.1|Name=mRNA_H-paniculata_contig12803.1764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
WGAPFALRSLRVIIATNKGRHERFGVFLRKRTTLAMEGFLCMVALAIVAM
LSLFLEPYSDGWATSRGAPRGGQCFMMMEWKLLLPFCVLQTVLFGILGFR
LSNVHDLLNISSELRVNFMLYLFFGLPYFVLQLHYRYRT
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mRNA from alignment at H-paniculata_contig12803:452..2263-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12803.1764.1 ID=mRNA_H-paniculata_contig12803.1764.1|Name=mRNA_H-paniculata_contig12803.1764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1812bp|location=Sequence derived from alignment at H-paniculata_contig12803:452..2263- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGGAGCACCCTTCGCCCTCAGGAGCCTTCGCGTGATCATCGCTACCAA
TAAGGGTGAGTCAGGAATTCGGCAGGGGAATGACAGGCTTGTTTTGCTTT
AGCCACCGTTCTCCACATATGACCTACATATAGTGTAACCTAAACGTGGA
AATAGCAGGAAACAAGCAGGTTTTGTTATTCTACTTGACACAAGGCCTGC
TTATCGTATCACAACTATCACGGGGATGAGAACTATCGCTGTTCAGACGA
CGAATTGGCACGGTTGTGCACAACACGAATATAGCGCTCGACACTGGCGT
ACGCGGCATGCTGTGCATGTACGATCAGTTGCTGCAGGAAAATCAGGGCA
TGAATTGAGTTCGAACGAAGCCACGTCCTCACGGCGGCACCTTGCCCATG
CATTTGAGTCATGCTCACAGCAGATGCAACAAGTCCATAGACCGTACAGT
CAGCGTGTTGGATGCTCTTGTTCTCTGAGTTTTCCTCGTTCCATTTGTCT
GGTTTATGGGGTAGAACAGAAAAATGGATGAGCGTTTGTGAATTGGCCAG
AGTGTTTGCCAAGGCTGAAAAATTCTGGTTCAAAACTCTACTTGAATGCA
AGCATCGTGCTTCGGTGCTATATAAAAGAGAAAAACAAGCTAACTTTCTT
TCCGCGGACACTATAATGAGGAAAAATAATTTGGCTCTTTTTGTACTGAT
GTCTTACTTGATTTTGGATGAATGGATGGGTGGAAGGATTCATGGCCCTA
CAAGTAGTTATCCCCCCCCCGTGGGCTGTTTGTCTGCTGAGGACAGCCAA
TTCCGTGCTCATTTGCTAATGTGCGATTCGGAGGCGTTTATTATCAGCTG
GGAACATGAGCCCCCGGCGCGCCTCTTGGGGGAAGATCATGTGGCTATTA
TCCATGGTTGAGGCTGCGGTAAAAAGTCCCAGAGGGGTGGCTCTCGCTAG
GGTGTTTCAACCCTGTGTTCAACATCTCGATGTTTCAATGTTTCAATCGA
TGCTATAAACAGGCGTATACAGTATATATATACATATATATATATACATC
ATTCTTGCCAATATCAACACGTTGGTATCGGTGTCGATAACACCAGCCAA
CAGTAATGACGGGACTTTGCCTGCTTGCCGCGGAATTATTGGATGGGGGG
ATGAACGGATGGATGGACGGATCGTCTGAACACACTAAACAAACAGGACG
ACACGAAAGGTTCGGGGTGTTTCTCCGAAAACGCACGACTCTGGCGATGG
AAGGGTTTTTGTGCATGGTAGCTTTAGCCATCGTGGCCATGCTTAGCTTG
TTCCTGGAGCCGTACAGTGACGGCTGGGCCACCTCGAGGGGGGCGCCGCG
AGGAGGGCAGTGCTTTATGATGATGGAGTGGAAGCTCCTGCTTCCGTTTT
GTGTCCTTCAGGTGAAACGAACTAATGGCGAAACGGATAAATCAGTCACT
GGGTCAACCCTCGTGGTATCAATAGAAGTAGATTCAGTGAGCTTTTTTAT
CGTCTTGAAAAGACGTAGGGGTCGATTTTCGGATGTATTTTCAAGATGTT
GGGTATTTCGCACCCCCCTACGTTGTCCACCCGTCATAATCGATGCTGTA
TGACGAATGGATGGGAACTAACACCCCGCGCGCCGCAACGCTCCGCAAAA
CACAATGCAACGCAGACGGTGTTATTCGGGATTCTGGGGTTCCGTCTAAG
CAACGTCCATGATCTACTCAACATCTCTAGCGAGCTCAGGGTCAACTTTA
TGCTTTACCTGTTTTTTGGGCTGCCCTACTTTGTGCTGCAGCTCCACTAC
CGGTATCGAACG
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Coding sequence (CDS) from alignment at H-paniculata_contig12803:452..2263-

>mRNA_H-paniculata_contig12803.1764.1 ID=mRNA_H-paniculata_contig12803.1764.1|Name=mRNA_H-paniculata_contig12803.1764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig12803:452..2263- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGGAGCACCCTTCGCCCTCAGGAGCCTTCGCGTGATCATCGCTACCAA
TAAGGTGGGGAGCACCCTTCGCCCTCAGGAGCCTTCGCGTGATCATCGCT
ACCAATAAGGGACGACACGAAAGGTTCGGGGTGTTTCTCCGAAAACGCAC
GACTCTGGCGATGGAAGGGTTTTTGTGCATGGTAGCTTTAGCCATCGTGG
CCATGCTTAGCTTGTTCCTGGAGCCGTACAGTGACGGCTGGGCCACCTCG
AGGGGGGCGCCGCGAGGAGGGCAGTGCTTTATGATGATGGAGTGGAAGCT
CCTGCTTCCGTTTTGTGTCCTTCAGGACGACACGAAAGGTTCGGGGTGTT
TCTCCGAAAACGCACGACTCTGGCGATGGAAGGGTTTTTGTGCATGGTAG
CTTTAGCCATCGTGGCCATGCTTAGCTTGTTCCTGGAGCCGTACAGTGAC
GGCTGGGCCACCTCGAGGGGGGCGCCGCGAGGAGGGCAGTGCTTTATGAT
GATGGAGTGGAAGCTCCTGCTTCCGTTTTGTGTCCTTCAGACGGTGTTAT
TCGGGATTCTGGGGTTCCGTCTAAGCAACGTCCATGATCTACTCAACATC
TCTAGCGAGCTCAGGGTCAACTTTATGCTTTACCTGTTTTTTGGGCTGCC
CTACTTTGTGCTGCAGCTCCACTACCGGTATCGAACGACGGTGTTATTCG
GGATTCTGGGGTTCCGTCTAAGCAACGTCCATGATCTACTCAACATCTCT
AGCGAGCTCAGGGTCAACTTTATGCTTTACCTGTTTTTTGGGCTGCCCTA
CTTTGTGCTGCAGCTCCACTACCGGTATCGAACG
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