prot_H-paniculata_contig12791.1751.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig12791.1751.1
Unique Nameprot_H-paniculata_contig12791.1751.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length324
Homology
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BLAST of mRNA_H-paniculata_contig12791.1751.1 vs. uniprot
Match: A0A6H5KAP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAP8_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 6.340e-68
Identity = 131/217 (60.37%), Postives = 155/217 (71.43%), Query Frame = 0 
Query:  117 SGAGTLGITALLSIKGEEHEDAERSRYAAADGSE----------NSKWA-SRGLGLLAVLSFWLSHTASVYATKALLARPGRTARSVVLITWCQCVTSWFLVLCLGTLGEGLNPSKSVWHPRLLAELARALPTNALLGGWNSRTLLGGGAASVGVASVLFSLAVFSDNACLGVVNASFFQVARALTLPLVTCVGSLSTGALPQRDLLLPCSLCVLGF 322
            SG G LG +       +E  +AE +  AA +  E             WA SR    L+V +FW SHT SVYATKALL+RPGRT R+VVLITW QC+ S+ LVL LGTLG+  +  K  W   LL E+ARALP NALLGGWNS++LLGGGA +VG+ASVLFSLAVF+DNACLGVVNASFFQVARALTLP VT +G++ + ALP RDLLLPC LCV+GF
Sbjct:  206 SGVGVLGFSDA-----DEFAEAELTPAAAGEEGEALFTPMRDNSTEMWAMSRASRFLSVAAFWASHTCSVYATKALLSRPGRTLRTVVLITWFQCLVSFMLVLSLGTLGDRQDSRKGAWRSGLLTEMARALPPNALLGGWNSKSLLGGGAEAVGLASVLFSLAVFADNACLGVVNASFFQVARALTLPFVTVMGAVGSRALPPRDLLLPCVLCVVGF 417
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BLAST of mRNA_H-paniculata_contig12791.1751.1 vs. uniprot
Match: D7FIS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS0_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 7.060e-68
Identity = 117/167 (70.06%), Postives = 139/167 (83.23%), Query Frame = 0 
Query:  156 SRGLGLLAVLSFWLSHTASVYATKALLARPGRTARSVVLITWCQCVTSWFLVLCLGTLGEGLNPSKSVWHPRLLAELARALPTNALLGGWNSRTLLGGGAASVGVASVLFSLAVFSDNACLGVVNASFFQVARALTLPLVTCVGSLSTGALPQRDLLLPCSLCVLGF 322
            SR    L+V++FW SHT SVYATKALL+RPGRT R+VVLITW QC+ S+ LVL LGTLG+  + +K  W   LL E+ARALP NALLGGWNS++LLGGGA +VG+ASVLFSLAVF+DNACLGVVNASFFQVARALTLP VT +G++ + ALP RDLLLPC LC++GF
Sbjct:    2 SRASRFLSVVAFWASHTCSVYATKALLSRPGRTLRTVVLITWFQCLVSFVLVLSLGTLGDRQDSTKGAWRSGLLTEMARALPPNALLGGWNSKSLLGGGAEAVGLASVLFSLAVFADNACLGVVNASFFQVARALTLPFVTVMGAVGSRALPPRDLLLPCVLCMVGF 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12791.1751.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAP8_9PHAE6.340e-6860.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIS0_ECTSI7.060e-6870.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 183..193
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 271..324
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..158
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 250..270
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 194..214
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 159..182
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 215..249
NoneNo IPR availableTMHMMTMhelixcoord: 249..271
NoneNo IPR availableTMHMMTMhelixcoord: 192..214
NoneNo IPR availableTMHMMTMhelixcoord: 284..306

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12791contigH-paniculata_contig12791:1442..6460 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12791.1751.1mRNA_H-paniculata_contig12791.1751.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig12791 1295..6460 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig12791.1751.1 ID=prot_H-paniculata_contig12791.1751.1|Name=mRNA_H-paniculata_contig12791.1751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=324bp
MTTTKPPPPPPPSPSPSPPPMVTVEMSAGQKKHGNAAAVSNDLLNKNNSN
ALPPPVKIPSPTPQLSSPSYTAAPAPRLEEPAVAPPPPPPQPPSPPSTHD
ATTGRTDRHEEESLVYSGAGTLGITALLSIKGEEHEDAERSRYAAADGSE
NSKWASRGLGLLAVLSFWLSHTASVYATKALLARPGRTARSVVLITWCQC
VTSWFLVLCLGTLGEGLNPSKSVWHPRLLAELARALPTNALLGGWNSRTL
LGGGAASVGVASVLFSLAVFSDNACLGVVNASFFQVARALTLPLVTCVGS
LSTGALPQRDLLLPCSLCVLGFLL
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