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Homology
BLAST of mRNA_H-paniculata_contig12791.1751.1 vs. uniprot
Match: A0A6H5KAP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAP8_9PHAE) HSP 1 Score: 235 bits (599), Expect = 3.090e-67 Identity = 131/217 (60.37%), Postives = 155/217 (71.43%), Query Frame = 1
Query: 496 SGAGTLGITALLSIKGEEHEDAERSRYAAADGSE----------NSKWA-SRGLGLLAVLSFWLSHTASVYATKALLARPGRTARSVVLITWCQCVTSWFLVLCLGTLGEGLNPSKSVWHPRLLAELARALPTNALLGGWNSRTLLGGGAASVGVASVLFSLAVFSDNACLGVVNASFFQVARALTLPLVTCVGSLSTGALPQRDLLLPCSLCVLGF 1113
SG G LG + +E +AE + AA + E WA SR L+V +FW SHT SVYATKALL+RPGRT R+VVLITW QC+ S+ LVL LGTLG+ + K W LL E+ARALP NALLGGWNS++LLGGGA +VG+ASVLFSLAVF+DNACLGVVNASFFQVARALTLP VT +G++ + ALP RDLLLPC LCV+GF
Sbjct: 206 SGVGVLGFSDA-----DEFAEAELTPAAAGEEGEALFTPMRDNSTEMWAMSRASRFLSVAAFWASHTCSVYATKALLSRPGRTLRTVVLITWFQCLVSFMLVLSLGTLGDRQDSRKGAWRSGLLTEMARALPPNALLGGWNSKSLLGGGAEAVGLASVLFSLAVFADNACLGVVNASFFQVARALTLPFVTVMGAVGSRALPPRDLLLPCVLCVVGF 417
BLAST of mRNA_H-paniculata_contig12791.1751.1 vs. uniprot
Match: D7FIS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS0_ECTSI) HSP 1 Score: 229 bits (584), Expect = 3.380e-67 Identity = 117/167 (70.06%), Postives = 139/167 (83.23%), Query Frame = 1
Query: 613 SRGLGLLAVLSFWLSHTASVYATKALLARPGRTARSVVLITWCQCVTSWFLVLCLGTLGEGLNPSKSVWHPRLLAELARALPTNALLGGWNSRTLLGGGAASVGVASVLFSLAVFSDNACLGVVNASFFQVARALTLPLVTCVGSLSTGALPQRDLLLPCSLCVLGF 1113
SR L+V++FW SHT SVYATKALL+RPGRT R+VVLITW QC+ S+ LVL LGTLG+ + +K W LL E+ARALP NALLGGWNS++LLGGGA +VG+ASVLFSLAVF+DNACLGVVNASFFQVARALTLP VT +G++ + ALP RDLLLPC LC++GF
Sbjct: 2 SRASRFLSVVAFWASHTCSVYATKALLSRPGRTLRTVVLITWFQCLVSFVLVLSLGTLGDRQDSTKGAWRSGLLTEMARALPPNALLGGWNSKSLLGGGAEAVGLASVLFSLAVFADNACLGVVNASFFQVARALTLPFVTVMGAVGSRALPPRDLLLPCVLCMVGF 168
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 230.7 |
Seed ortholog evalue | 9.6e-58 |
Seed eggNOG ortholog | 2880.D7FIS0 |
Preferred name | SLC35C1 |
KEGG ko | ko:K15279 |
KEGG TC | 2.A.7.16 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000139,GO:0003674,GO:0005215,GO:0005338,GO:0005457,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006629,GO:0006810,GO:0008150,GO:0008152,GO:0008593,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0012505,GO:0015780,GO:0015783,GO:0015931,GO:0015932,GO:0016020,GO:0022857,GO:0023051,GO:0023057,GO:0030258,GO:0030259,GO:0031090,GO:0031984,GO:0036080,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045746,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0055085,GO:0065007,GO:0070085,GO:0071702,GO:0071704,GO:0071705,GO:0090480,GO:0098588,GO:0098791,GO:1901264,GO:1901505 |
EggNOG free text desc. | GDP-fucose import into Golgi lumen |
EggNOG OGs | KOG1442@1,KOG1442@2759 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko02000 |
Exons | 4 |
Model size | 1120 |
Cds size | 972 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12791.1751.1 >prot_H-paniculata_contig12791.1751.1 ID=prot_H-paniculata_contig12791.1751.1|Name=mRNA_H-paniculata_contig12791.1751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=324bp
MTTTKPPPPPPPSPSPSPPPMVTVEMSAGQKKHGNAAAVSNDLLNKNNSN ALPPPVKIPSPTPQLSSPSYTAAPAPRLEEPAVAPPPPPPQPPSPPSTHD ATTGRTDRHEEESLVYSGAGTLGITALLSIKGEEHEDAERSRYAAADGSE NSKWASRGLGLLAVLSFWLSHTASVYATKALLARPGRTARSVVLITWCQC VTSWFLVLCLGTLGEGLNPSKSVWHPRLLAELARALPTNALLGGWNSRTL LGGGAASVGVASVLFSLAVFSDNACLGVVNASFFQVARALTLPLVTCVGS LSTGALPQRDLLLPCSLCVLGFLL back to topmRNA from alignment at H-paniculata_contig12791:1295..6460+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig12791.1751.1 ID=mRNA_H-paniculata_contig12791.1751.1|Name=mRNA_H-paniculata_contig12791.1751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5166bp|location=Sequence derived from alignment at H-paniculata_contig12791:1295..6460+ (Halopteris paniculata Hal_grac_a_UBK monoicous) TAGGTTCGCCATCGGCGACACCAGCAGCTGCAGCTGCAGCACTAGGCTAC
AACAACGAGCAGCCCTAATAATTTCATCCTTGGAGGGAGGGAAGGAGAAG
CGAGAGGGGGGAGTGTAGCAACCCAAAGAACGAAGACACCGACAGCGATG
ACAACAACAAAACCACCACCACCACCACCACCATCACCATCACCATCACC
ACCACCCATGGTGACGGTAGAAATGTCGGCGGGGCAAAAGAAGCACGGTA
ATGCGGCGGCGGTGTCCAACGATCTCTTGAATAAAAACAACAGCAACGCC
CTACCACCCCCCGTAAAGATCCCATCCCCCACCCCCCAGCTATCATCACC
GTCATACACGGCGGCTCCGGCCCCACGACTGGAAGAACCCGCTGTAGCAC
CACCGCCACCACCTCCACAACCACCATCCCCACCGTCGACCCACGATGCA
ACCACGGGCCGTACAGACCGTCACGAAGAGGAATCACTTGTGTACTCTGG
CGCCGGTACCCTAGGCATCACGGCGCTGTTGTCGATAAAGGGCGAGGAGC
ATGAGGATGCCGAGCGATCGCGATACGCCGCGGCCGACGGGTCGGAGAAC
TCCAAGTGGGCTTCGAGAGGGTTGGGTTTGTTAGCGGTGTTGTCTTTTTG
GCTGTCTCACACGGCGTCTGTGTATGCGACGAAGGCGCTGCTGGCCCGCC
CCGGGAGGACTGCACGGAGCGTGGTCCTCATCACGTGGTGCCAAGTACGT
GTAGGGGATAAATAGGCCAGGGGGGTTGGGTGTGTACATACTCGGAATGA
TTTTGTTAATATTTCACACGTCGTCGGACAGAACATATTCTTTCGTTCTC
TAGAATAGAAGGGAGCATATATAATATAATAGAACAGGTCGCCCCTTGGA
GGAATCAAAATGCTTGGAGCATAAGTAGTGAGCACGTTTCTTTCACGTGC
TCCGGAACGGAAGGGCCTTTTTAATATGGCTGCTCCGAACTTGTAAAACG
ACTCTCAACGGGGGGTTCAACGCCTTTTTTTATGCGCCCATACCTTCTGA
ACCTTCAGGGGAATGCAGATTTAAAAAAAAAGTTCGTCGTGAATGCTCGA
GGTGTTGTATTGTAGTCAACTGGGGGGGGTTGAAGATGCTATGTCGATTT
TAACTCAAAAAGTGCCAACAGGACGTTGTAGTGAAATGTGTGCTCTTAAA
GCCCAACAAACCGTCCCTAATTCTTTAGGAGCCTGTGACTCCCTAATCAG
CTGTGGATTGGTTGTGTATTGTGCAGCCGTTACGAGAAAAAGTAGGTGTT
TTGCCCATTTTCCCTCTGCACGAAATCCAATACAACCCCCCCAAAGCGAC
AAAAAACGGACCCTCTGTTTCACCCGAGATGCACTAACCAGCTGCCTAGA
GCTGGTTGAGGCATTCTGTCGACGTATGCATCAGTTACGAATGGTCGTTA
AGCAATCTACATTTTGGCCTTTACAAAATCCGGTTCCTGAAGGATTGAGA
AACGCTATTGACTCTTGAACCCTTCACACATTCAACGGCTATAGCTTAGA
GTCGTTGTAGTCGAGTCGATTGCTTAGTTGTGGACACTTATGGGAATTAC
TCGGTTTCATGTTTCGAGAATTAATCAGGTCCGTCGACTATAGTTGGTTC
CGTTTTGGAATTCAGTCGGTTTAGTCGACTGCAGTCGGTTCTGCGTGGGG
AATTGGTCGACTTAGTCGACTATAGTCTGTCTCCCTTTCGGGAAGTAGTT
AACTCCGTCGAATATTGTGGGTTTCAGTGTTGGGAATTGGTCCGTGTAGC
CCGCTCAGGCGACTAATAGTCGTTTTCATTCTGGAAATTAGTCAGCTTAG
TCGCCTTTATAGTTGGTTTCATCATTGGGAATTAGTCGGCTTTGTCGACT
GTAGTCGGTTTCTTTTCGAGAATTAGTCGGTTGAGTCGGCTCAGCCGACC
GATAGTCATTTCCGCTTCGCGAATTAGTTACAGTACATGAAGCACAGACG
TGAGAGATTGGCATGGCTCTGCCCACAACGATTACTACTACAGCGCGCTA
TCACATATGACCGTGGGATTCGAGCGCACGTCTGATGATATTACAACAAC
TCCCCCCCCGCGACATGACCAGCTCTGTACTATCAGCCGCAGCACTAGTC
ATTTCGGAAATGCACCACGTTCCGCTCTCAGGAATCTGGCACAAGACGCA
TCCCAATAGTCGGCGGGGGGGAGCTCGCCGTTTGTACCACTGTCATATCT
AGATTTTGTTCCGAAAATTCCATTAAAACAGCCTCCGGCGCGCCCCCCAC
AGGGTTAACCAACAAACAGCTTGTGCATGTATCTGTAAAATGAATTCGGC
TTTCATGGGGTTTTTTTGGGGTGGTCCTTCTTACTCCCTCACCTAACTTT
CCTCATGAAATCCCATATTCTTCCTCTGTGCCATAAGCAAAGTCGGTTGA
ATTTGGCAGATCAGATCTCCAGATCTTTTTTTTTTTCAAAGGCTGGGGAT
GGCATCGTTGGAAATCAATACTCTGATACACCCAAATGCGCTATTCCACA
GTTCATTTCGAGTTGTGTATTAGGATTAATGGTCGCTCAAGGTTGGGCCA
GTTTTGATTAGTTTTACGTTGTTTTCGATTTCAGAGATTTTTACGTTGGA
AAATACGAAAAGGGGCAAAAATTGGGCTTTTTTTGGCCGACTTCTTTTTT
TCGCGCCGTGCGTGCATGAGATGGGTCTTTGCCATTTTTCGCGGAATTTT
GGGGTCAACCCCAGAAATATGTAGGATTCTAACTAAAACAAAAACCCTGT
AATCGGAGATGTTCACATGCCCCTCCAAAAACACTTCGTCTTTACTGATG
GCGTAGAGAAAGTATTATATTATTTACCTATTCCCCCGTCCTTTTTTACA
GTGCGTCACGAGCTGGTTTTTGGTGCTCTGTTTGGGCACCTTGGGAGAGG
GATTGAATCCTTCCAAGTCTGTGTGGCACCCCCGCTTGCTGGCGGAATTG
GCGCGGGCCCTGCCGACGAACGCCTTATTGGGGGGATGGAACTCCCGAAC
TCTGCTGGGCGGCGGCGCAGCGTCAGTGGTGCGTGAGAGGCTAGACTGAC
TCACTGTTATATTTCTTTTTTCCCCTCCATTTTGGCTTGTGCTAGAAAAA
ACCCCGACATGAACACTTCCCCATATTTGTGATGTCTCTCTCACTCTGTT
CATTCAGATATACGTATTCGTTTTCTGTTGTTGGGTTTGCGGAGAAGCGC
ACTGACTGGGCTCCTGCAAAAGAATGTGATATGTGTATGAACAGACTGTA
GAAGCCGCTCCCAAGATTTCACCCCCAAAGCTTTTATTGTCGGAAACCTG
AAATTCCCTCTTTGGAATATTTGACGCGTGCTCATATCATGGCATCTGAG
TCTTACGATGCTGATGTGTGTGTTTGTGTGTTTGTTTCGCTGCCGCTGCT
GCTGCTGCTATGATGTAATGCGATGCAATACGATGTGATTTGGATGTGAT
TTGGTCATATGCTTATTACAGGGCGTCGCCTCCGTGCTTTTTTCGTTGGC
GGTGTTCTCCGACAACGCGTGCCTTGGCGTCGTGAACGCGTCTTTCTTCC
AAGTGGCGAGGGCGCTCACTCTGCCGCTCGTTACCTGCGTGGGGTAAGCA
TAGCTGCCTTCTGCCCAGACTTGTCAGTAGCAGGACTCGCAGCAACTGCC
AAAGACAACCTATTACGGAGGCACATTGTCAATAGGGCCAAATTGTCGCT
CGTCCACCTGCCATTCAACTCGGTATATCTCAACAAATCACGGGGCCGAA
TCGAAAACCGAAACGTGGGTGCACACTGCATGGTCGAGACACGCTTCACA
CATCTCGGCTCCCCACGTTGTTTTAGTCGAATGGTTTCTCAGACTTTCGT
TTTCCCGTTGAGCAACACTTTGGTTCTACTTGCAAAGTAGCCCTTAATCT
CTGTGAATTTTGCTCGTGAAGACATGTAGCAACCCCGACTGGCTGTAGAC
CCCAACGTTTTCCTGCTGCCACCACCATGGCATGTACGTTATCTAGAACC
ACCTACTGTACATGTATGGATTTGATAGAGCTACTTACTCTGGCAAGTGG
GTTGGCTCGCGAATGCAGCTTTGCGGGTGAGGTTGTTGTTTCCATTGCTG
CCAATCGTGCACGTGTAAGTCATGTCATCTTTACATATGGTACTCACGCG
AGTGACGCAGTTATACCCACCTAAAGGTCGTAGCTCGTGTTGAACGTGGT
TGAAGAGATGCAAGAAATTTTGGTGCTCGATCATTGTTAGAGCAAGATTA
TGTTCTGTGATCAGTAGTCCTGTTGACCTACCAAGCAGCATACCCAATTA
TCCGTCAAGTCTAGCCAACAGCCAGTTCATCTGGTGGACACGTGTGGTTT
TTTGTGGATGAGCTGTAGCAGTGATGGAGGAATGAGCACTTGTTCATGTA
CAGCTCTCTCAGCATAATGTACTCCGAGGTTGCAAAATGGGGTTAGGCTT
TCGACTGGCACTCCAAAACGGCTGTACAATAGCCGTTTCTTTATCCCACC
ATTTGTTGCCCTATGTGTCATGCTCGCATGCTTCCATAGTTGTCCTGCAA
ACTAAGCTTTGCCGCTGCACCTGTTGGGTGGGTTCATAAGAAATGCACAG
AAAATTAAGCTTTACGGTGGTTGTACCCGTCGGGGTCATGATAAATATAC
ATCGAGGGTATAATGAGTAAATATTGGAGATGTCCACCCCCACCAATAGC
AATTAAATTTTGCTGGTGAGTGTGAACAGCTGAACTTTTAAAGCTGGCTG
CATAACCTCAATATGGGTACAGTAGAGTCATAACGTGAGAACTATAGAGC
TACAGTTCCACTTACTATGACAGGGTCGACTTCCGAATGAAATTTTTCGG
GTGTGTCTGTCGTTCATGGGAAAACTATTTCATGTTCTCTACATAGCCCA
TCGCCCTCTTCCCCACCTGATCCCTTGATCCTCATTTCCCTGTTCCCTAT
TGATACTGCGCCTGCTGATAACCCGACTTGACGCGGGGGGGTACGATATG
CAAATCACGTGATGCGTGCTGCATGCACTCTTACATTTAGTTCGCTGTCC
ACAGGTGCACTACCCCAGCGCGACCTCCTTCTACCGTGCAGTCTGTGCGT
GCTGGGATTCCTGCTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig12791:1295..6460+ >mRNA_H-paniculata_contig12791.1751.1 ID=mRNA_H-paniculata_contig12791.1751.1|Name=mRNA_H-paniculata_contig12791.1751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1944bp|location=Sequence derived from alignment at H-paniculata_contig12791:1295..6460+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGACAACAACAAAACCACCACCACCACCACCACCATCACCATCACCATC ACCACCACCCATGGTGACGGTAGAAATGTCGGCGGGGCAAAAGAAGCACG GTAATGCGGCGGCGGTGTCCAACGATCTCTTGAATAAAAACAACAGCAAC GCCCTACCACCCCCCGTAAAGATCCCATCCCCCACCCCCCAGCTATCATC ACCGTCATACACGGCGGCTCCGGCCCCACGACTGGAAGAACCCGCTGTAG CACCACCGCCACCACCTCCACAACCACCATCCCCACCGTCGACCCACGAT GCAACCACGGGCCGTACAGACCGTCACGAAGAGGAATCACTTGTGTACTC TGGCGCCGGTACCCTAGGCATCACGGCGCTGTTGTCGATAAAGGGCGAGG AGCATGAGGATGCCGAGCGATCGCGATACGCCGCGGCCGACGGGTCGGAG AACTCCAAGTGGGCTTCGAGAGGGTTGGGTTTGTTAGCGGTGTTGTCTTT TTGGCTGTCTCACACGGCGTCTGTGTATGCGACGAAGGCGCTGCTGGCCC GCCCCGGGAGGACTGCACGGAGCGTGGTCCTCATCACGTGGTGCCAAATG ACAACAACAAAACCACCACCACCACCACCACCATCACCATCACCATCACC ACCACCCATGGTGACGGTAGAAATGTCGGCGGGGCAAAAGAAGCACGGTA ATGCGGCGGCGGTGTCCAACGATCTCTTGAATAAAAACAACAGCAACGCC CTACCACCCCCCGTAAAGATCCCATCCCCCACCCCCCAGCTATCATCACC GTCATACACGGCGGCTCCGGCCCCACGACTGGAAGAACCCGCTGTAGCAC CACCGCCACCACCTCCACAACCACCATCCCCACCGTCGACCCACGATGCA ACCACGGGCCGTACAGACCGTCACGAAGAGGAATCACTTGTGTACTCTGG CGCCGGTACCCTAGGCATCACGGCGCTGTTGTCGATAAAGGGCGAGGAGC ATGAGGATGCCGAGCGATCGCGATACGCCGCGGCCGACGGGTCGGAGAAC TCCAAGTGGGCTTCGAGAGGGTTGGGTTTGTTAGCGGTGTTGTCTTTTTG GCTGTCTCACACGGCGTCTGTGTATGCGACGAAGGCGCTGCTGGCCCGCC CCGGGAGGACTGCACGGAGCGTGGTCCTCATCACGTGGTGCCAATGCGTC ACGAGCTGGTTTTTGGTGCTCTGTTTGGGCACCTTGGGAGAGGGATTGAA TCCTTCCAAGTCTGTGTGGCACCCCCGCTTGCTGGCGGAATTGGCGCGGG CCCTGCCGACGAACGCCTTATTGGGGGGATGGAACTCCCGAACTCTGCTG GGCGGCGGCGCAGCGTCAGTGTGCGTCACGAGCTGGTTTTTGGTGCTCTG TTTGGGCACCTTGGGAGAGGGATTGAATCCTTCCAAGTCTGTGTGGCACC CCCGCTTGCTGGCGGAATTGGCGCGGGCCCTGCCGACGAACGCCTTATTG GGGGGATGGAACTCCCGAACTCTGCTGGGCGGCGGCGCAGCGTCAGTGGG CGTCGCCTCCGTGCTTTTTTCGTTGGCGGTGTTCTCCGACAACGCGTGCC TTGGCGTCGTGAACGCGTCTTTCTTCCAAGTGGCGAGGGCGCTCACTCTG CCGCTCGTTACCTGCGTGGGGGCGTCGCCTCCGTGCTTTTTTCGTTGGCG GTGTTCTCCGACAACGCGTGCCTTGGCGTCGTGAACGCGTCTTTCTTCCA AGTGGCGAGGGCGCTCACTCTGCCGCTCGTTACCTGCGTGGGTTCGCTGT CCACAGGTGCACTACCCCAGCGCGACCTCCTTCTACCGTGCAGTCTGTGC GTGCTGGGATTCCTGCTGTTCGCTGTCCACAGGTGCACTACCCCAGCGCG ACCTCCTTCTACCGTGCAGTCTGTGCGTGCTGGGATTCCTGCTG back to top
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