mRNA_H-paniculata_contig12778.1744.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: D7FYW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW4_ECTSI) HSP 1 Score: 162 bits (409), Expect = 9.330e-48 Identity = 74/106 (69.81%), Postives = 86/106 (81.13%), Query Frame = 2 Query: 116 NVFAMAKGGLYLQHQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAWPKKVNTATKKRPLEADSSNG 433 ++F + GGLYL+HQ VG+AQY+ TFLPSQSCRKYLKLR QQ+V FRAACFCHK+VVDIA+VCSVCLSVFCEFSPVC+TCGTRAWPKK+ K +NG Sbjct: 10 SIFHVLPGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGRHKALAGTTVANG 115
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: A0A6H5KQ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ72_9PHAE) HSP 1 Score: 159 bits (403), Expect = 2.350e-44 Identity = 74/103 (71.84%), Postives = 83/103 (80.58%), Query Frame = 2 Query: 125 AMAKGGLYLQHQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAWPKKVNTATKKRPLEADSSNG 433 A GGLYL+HQ VG+AQY+ TFLPSQSCRKYLKLR QQ+V FRAACFCHK+VVDIA+VCSVCLSVFCEFSPVC+TCGTRAWPKK+ K +NG Sbjct: 211 AYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKALAGTTVANG 313
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: A0A835ZC01_9STRA (Putative general transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC01_9STRA) HSP 1 Score: 126 bits (316), Expect = 9.610e-32 Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 2 Query: 125 AMAKGGLYLQHQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAWPKKVNT 391 A GG+Y QE + Q LLT LPSQ+CRKYL+ + Q+TV FRAACFCH+++++IA+VCSVCLSVFCEFSP+C+TCGTRA PK + T Sbjct: 197 ADVTGGVYCHVQEPNVLQQLLTLILPSQACRKYLRTKGQETVDFRAACFCHRRLIEIAYVCSVCLSVFCEFSPICATCGTRAVPKLLTT 285
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: A0A168N7M0_MUCCL (General transcription and DNA repair factor IIH subunit TFB4 n=2 Tax=Mucor circinelloides f. lusitanicus TaxID=29924 RepID=A0A168N7M0_MUCCL) HSP 1 Score: 99.4 bits (246), Expect = 5.330e-23 Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 2 Query: 137 GGLYLQHQE-VGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTR 367 GG+Y++ + + +YL+ FLP + R YL L Q V FRAACFCHKK+VDI FVCSVCLS+FC++SPVCSTC T+ Sbjct: 35 GGVYVKMENRQALLEYLMMAFLPDRYSRNYLNLPSQDQVDFRAACFCHKKIVDIGFVCSVCLSIFCKWSPVCSTCKTK 112
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: K3WG36_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG36_GLOUD) HSP 1 Score: 102 bits (255), Expect = 1.350e-22 Identity = 52/97 (53.61%), Postives = 64/97 (65.98%), Query Frame = 2 Query: 125 AMAKGGLYLQ-HQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRA--WPKKVNTATKKR 406 A GG+Y + + G+ QYLL+ +LP S RK LKL Q +V FRA CFCHK+V+ AFVC VCLS+FCEF P+CSTCG R+ P K KKR Sbjct: 212 AYLTGGIYYKPNDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKRVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKKMQQQKKR 308
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: A0A421GZV4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GZV4_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.460e-22 Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 2 Query: 125 AMAKGGLYLQ-HQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAW--PKKVNTATKKRP 409 A GG+Y + + G+ QYL++ +LP S RK LKL Q +V FRA CFCH++V+ A+VC VCLS+FCEF P+CSTCG R+ PKK N KKRP Sbjct: 198 AYLTGGIYYKPNDHSGLLQYLISIYLPDPSTRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKK-NGLMKKRP 294
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: H3GBC5_PHYRM (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GBC5_PHYRM) HSP 1 Score: 102 bits (253), Expect = 2.070e-22 Identity = 53/101 (52.48%), Postives = 68/101 (67.33%), Query Frame = 2 Query: 125 AMAKGGLYLQ-HQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAW--PKKVNTATKKRPLEA 418 A GG+Y + + G+ QYL++ +LP S RK LKL Q +V FRA CFCH++V+ A+VC VCLS+FCEF P+CSTCG R+ PKK N KKRP A Sbjct: 199 AYLTGGIYYKPNGPSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKK-NGVLKKRPRVA 298
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: F0WU60_9STRA (General transcription factor IIH subunit putative n=2 Tax=Albugo TaxID=65356 RepID=F0WU60_9STRA) HSP 1 Score: 101 bits (252), Expect = 2.420e-22 Identity = 50/95 (52.63%), Postives = 67/95 (70.53%), Query Frame = 2 Query: 137 GGLYLQHQEV-GIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAW---PKKVNTATKKRP 409 GG+Y + + + G+ QYL+T +LP + RK L+ Q++V FRA CFCHKK V AFVC VCLS+FC+F P+CSTCG R+ P+K+ AT KRP Sbjct: 193 GGIYYKPRVIDGLLQYLITLYLPDPNMRKMLRFPSQESVDFRAMCFCHKKAVSTAFVCPVCLSLFCQFQPICSTCGVRSRLSIPRKL--ATPKRP 285
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: M4BTB8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTB8_HYAAE) HSP 1 Score: 101 bits (252), Expect = 2.940e-22 Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 2 Query: 125 AMAKGGLYLQ-HQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAWPKKVNTATKKRPLEAD 421 A GG+Y + + G+ QYL+ +LP S RK LKL Q +V FRA CFCH++V+ AFVC VCLS+FCEF P+CSTCG R+ + T K+ L D Sbjct: 200 AYLTGGIYYKPNDHSGLLQYLIAIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAFVCPVCLSLFCEFRPICSTCGIRSHIQPKKTGMLKKHLRYD 299
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: A0A5D6XQC8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQC8_9STRA) HSP 1 Score: 101 bits (252), Expect = 3.360e-22 Identity = 51/99 (51.52%), Postives = 65/99 (65.66%), Query Frame = 2 Query: 125 AMAKGGLYLQH-QEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAW---PKKVNTATKKRP 409 A GG+Y + G+ QYLL+ +LP S RK LKL Q +V FRA CFCHK+V+ AFVC VCLS+FCEF P+CSTCG R+ KK+ ++RP Sbjct: 208 AYLTGGIYYKPIDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKEVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKKLQQKKRQRP 306 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12778.1744.1 >prot_H-paniculata_contig12778.1744.1 ID=prot_H-paniculata_contig12778.1744.1|Name=mRNA_H-paniculata_contig12778.1744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp MAKGGLYLQHQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHback to top mRNA from alignment at H-paniculata_contig12778:4009..5274+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12778.1744.1 ID=mRNA_H-paniculata_contig12778.1744.1|Name=mRNA_H-paniculata_contig12778.1744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig12778:4009..5274+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12778:4009..5274+ >mRNA_H-paniculata_contig12778.1744.1 ID=mRNA_H-paniculata_contig12778.1744.1|Name=mRNA_H-paniculata_contig12778.1744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig12778:4009..5274+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |