prot_H-paniculata_contig12683.1682.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig12683.1682.1
Unique Nameprot_H-paniculata_contig12683.1682.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length407
Homology
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BLAST of mRNA_H-paniculata_contig12683.1682.1 vs. uniprot
Match: D7FS81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS81_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.320e-70
Identity = 193/428 (45.09%), Postives = 231/428 (53.97%), Query Frame = 0 
Query:    8 GKKHPRVFAHYVLGRLVALFFFCHPGTLATCDGQAYLLNRYPNRDLLTTEGQMQAQRRQMTPRNPDDYAMRTGVPDEFLH---GDVDNYTPDWALSLEERFHNTVKAWLCRGLAVAKK--------ARDTAAAAAAG---------------AVTPPLPAMAFVPSPAARGAMDICQARANDR----QKQRWTS-IAEIGGGNNRRSALYRLPAVARRSGYHGAAARGSCPHGVEMLLGFRSRGGFPVRRRMFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLAASQRRPVSSVADDGKRGLSSVDSGNENKNVISVFLGGAADAYDSALSFVGCALVTSPLGKRYLNAYDAHTNTVPVSAIRGVGG-PHSM-SGCSYDLVGFSNIDPLEASARRGGGS 402
            G    RVF HYVLG+++ LFF CHPGTLATCDGQAYL NRY NRDL+ TE +++  RR    R+  ++AMR GVP+E L    G  DNYTPDWA +LE+RFH+TV AWL +G + A +        A  T A + A                AV      MAFVP+P  RG +     RA+       +QRW S +AE+G    R S      +  RR     +A RGS  +   +L  FR RG FP+RR +FG       XXXXXXXXXXXXXXX                                  TL   +R P++   D G         G    +V+S FLGGAADAYDSAL FVGCALVTSPLGKRYL+      NTV  S IR  GG P  M SG +YDLVGFSNIDP EAS R GGG+
Sbjct:    3 GPTKERVFIHYVLGKMLMLFFLCHPGTLATCDGQAYLRNRYANRDLVKTESELEDHRRHYKRRDVSEFAMRVGVPEEILQSKAGVDDNYTPDWAPTLEQRFHSTVVAWLRKGGSTADQDKPATTTGATHTNAGSTANTASXXXXXXXXXXMAAVRVATRGMAFVPTPHTRGRVTGVHRRASTSGALTARQRWVSPLAEVGSNPRRCSEC----SGCRRLR---SARRGSAGNPQMLLSRFRGRG-FPLRRGIFGGASEADGXXXXXXXXXXXXXXXEDCVQDEIRDQAAATTYNSAE-------------TLEGPER-PLTGNGDSG--------GGGSRSSVLSTFLGGAADAYDSALDFVGCALVTSPLGKRYLSGASDGYNTV--STIRRTGGGPADMNSGSAYDLVGFSNIDPFEASGRGGGGN 398
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12683.1682.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS81_ECTSI1.320e-7045.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 39..406
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 19..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 31..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..38
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12683contigH-paniculata_contig12683:2742..5716 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12683.1682.1mRNA_H-paniculata_contig12683.1682.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig12683 1194..6020 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig12683.1682.1 ID=prot_H-paniculata_contig12683.1682.1|Name=mRNA_H-paniculata_contig12683.1682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=407bp
MARSASQGKKHPRVFAHYVLGRLVALFFFCHPGTLATCDGQAYLLNRYPN
RDLLTTEGQMQAQRRQMTPRNPDDYAMRTGVPDEFLHGDVDNYTPDWALS
LEERFHNTVKAWLCRGLAVAKKARDTAAAAAAGAVTPPLPAMAFVPSPAA
RGAMDICQARANDRQKQRWTSIAEIGGGNNRRSALYRLPAVARRSGYHGA
AARGSCPHGVEMLLGFRSRGGFPVRRRMFGGGASVASISSERQQQQIMDG
SNGGGVRDDVQNRLMIGDGGGVDSSSSVEETAAVVGTLAASQRRPVSSVA
DDGKRGLSSVDSGNENKNVISVFLGGAADAYDSALSFVGCALVTSPLGKR
YLNAYDAHTNTVPVSAIRGVGGPHSMSGCSYDLVGFSNIDPLEASARRGG
GSASRL*
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