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Homology
BLAST of mRNA_H-paniculata_contig12683.1682.1 vs. uniprot
Match: D7FS81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS81_ECTSI) HSP 1 Score: 237 bits (604), Expect = 9.270e-66 Identity = 193/428 (45.09%), Postives = 231/428 (53.97%), Query Frame = 2
Query: 326 GKKHPRVFAHYVLGRLVALFFFCHPGTLATCDGQAYLLNRYPNRDLLTTEGQMQAQRRQMTPRNPDDYAMRTGVPDEFLH---GDVDNYTPDWALSLEERFHNTVKAWLCRGLAVAKK--------ARDTAAAAAAG---------------AVTPPLPAMAFVPSPAARGAMDICQARANDR----QKQRWTS-IAEIGGGNNRRSALYRLPAVARRSGYHGAAARGSCPHGVEMLLGFRSRGGFPVRRRMFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLAASQRRPVSSVADDGKRGLSSVDSGNENKNVISVFLGGAADAYDSALSFVGCALVTSPLGKRYLNAYDAHTNTVPVSAIRGVGG-PHSM-SGCSYDLVGFSNIDPLEASARRGGGS 1510
G RVF HYVLG+++ LFF CHPGTLATCDGQAYL NRY NRDL+ TE +++ RR R+ ++AMR GVP+E L G DNYTPDWA +LE+RFH+TV AWL +G + A + A T A + A AV MAFVP+P RG + RA+ +QRW S +AE+G R S + RR +A RGS + +L FR RG FP+RR +FG XXXXXXXXXXXXXXX TL +R P++ D G G +V+S FLGGAADAYDSAL FVGCALVTSPLGKRYL+ NTV S IR GG P M SG +YDLVGFSNIDP EAS R GGG+
Sbjct: 3 GPTKERVFIHYVLGKMLMLFFLCHPGTLATCDGQAYLRNRYANRDLVKTESELEDHRRHYKRRDVSEFAMRVGVPEEILQSKAGVDDNYTPDWAPTLEQRFHSTVVAWLRKGGSTADQDKPATTTGATHTNAGSTANTASXXXXXXXXXXMAAVRVATRGMAFVPTPHTRGRVTGVHRRASTSGALTARQRWVSPLAEVGSNPRRCSEC----SGCRRLR---SARRGSAGNPQMLLSRFRGRG-FPLRRGIFGGASEADGXXXXXXXXXXXXXXXEDCVQDEIRDQAAATTYNSAE-------------TLEGPER-PLTGNGDSG--------GGGSRSSVLSTFLGGAADAYDSALDFVGCALVTSPLGKRYLSGASDGYNTV--STIRRTGGGPADMNSGSAYDLVGFSNIDPFEASGRGGGGN 398
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_000890.1 |
| Exons | 3 |
| Model size | 3073 |
| Cds size | 1221 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12683.1682.1 >prot_H-paniculata_contig12683.1682.1 ID=prot_H-paniculata_contig12683.1682.1|Name=mRNA_H-paniculata_contig12683.1682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=407bp
MARSASQGKKHPRVFAHYVLGRLVALFFFCHPGTLATCDGQAYLLNRYPN
RDLLTTEGQMQAQRRQMTPRNPDDYAMRTGVPDEFLHGDVDNYTPDWALS
LEERFHNTVKAWLCRGLAVAKKARDTAAAAAAGAVTPPLPAMAFVPSPAA
RGAMDICQARANDRQKQRWTSIAEIGGGNNRRSALYRLPAVARRSGYHGA
AARGSCPHGVEMLLGFRSRGGFPVRRRMFGGGASVASISSERQQQQIMDG
SNGGGVRDDVQNRLMIGDGGGVDSSSSVEETAAVVGTLAASQRRPVSSVA
DDGKRGLSSVDSGNENKNVISVFLGGAADAYDSALSFVGCALVTSPLGKR
YLNAYDAHTNTVPVSAIRGVGGPHSMSGCSYDLVGFSNIDPLEASARRGG
GSASRL* back to topmRNA from alignment at H-paniculata_contig12683:1194..6020- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig12683.1682.1 ID=mRNA_H-paniculata_contig12683.1682.1|Name=mRNA_H-paniculata_contig12683.1682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4827bp|location=Sequence derived from alignment at H-paniculata_contig12683:1194..6020- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAAAAGTTGCTCCTAACATCCTTTTCCACACAAGCTGGTGTACGTGGTGA
TCCGCGTACGAACTTAAAGCAAACGGCCCCTTGATCAACACGGATAAGAC
CTAGCCAGGACAAAAGAGCCCCTGGTAACTGGAGTGGAGAACTCAGCACC
TGACAAGCATTTTAAGGTCGTCTACGCGGTGACGGCGTTTGTGATAATTA
CATTTTCGTAGATCAGGATCTCGGATTGATCCCGGCAAAAGCACGACAAC
GCTAGGCGAACCTACTGCAGTAGTGGTCCGGGGAGGGAGCACACCAGCAT
AGTCATGGCTCGATCAGCAAGTCAGGTCAGTAAATGTTCATGTGGTCGAC
GGAGGTGTGGGCGGCGGGTGGGATAGCTACTAATGTGTATGTTGCGGTGG
AAATTTGTGAGATTTCACCTGTATCAGCAGACCAGCTGACAGCTGATGAT
ACACATGTCGCATCATCTACTCTGTTCCTAGTGACGGATGTAAAATGTTC
CATGAGCATCATCAGTTTTTCGCAGTCTTGTGGGTCCAAACTGTCAAGTT
TGCGCGATGGAAGATGAGTTCAATGTTCATCCTTTTTGCTTCGGGCGTAT
GAGGTAGGTTAATAGTGTCTTTGCTGCAGCGCTCAAAACAACGTAGTATC
GCCTCCGAAGGAATATAGACTTGAGTCGTGCGGAAAATGCAACCAGTACC
CTGTTGTTAACGGCCCACACATACGTACTTCGGCGGCAGCTGCGTTGAGC
CATATGGCAAGGACCTTGGCTCGTGGTCGCGAGTAGCTGGTCGTGCGCTC
TTCGCCTCCCTCCGCCCCTAACCCGCATTGCACTGCACTACACTGCACTA
CGTTCGCCGTAGACTGGTCATTGCCAGTTCATGGCTGCGAAGTTGTTGTT
CTTGGTGTCGGCTAATAAAATATCGAAATATCCTCTTTCTCTGGCAGGTA
CACCTCGAAGCGAACCATATTTGCTGTATAAAAATCGTCCCGCGCAAATC
AATCGCGTGCCTTTACACGCCCCCCCCCCCCCCCCCCCCATCCCAATCCA
ATCAACATCAACATCAACATCAACATCAATGATCCCTCTACAAGTGAAAG
CGTGGGCTTACTCTACACGGTCGATTCCACATGTTGTAAGTTTTATTGGT
CGCTAAGTGTCGGTGAAAACGATGAAAGAACCCCGTCGGAATGAACTCCA
GGGCCACTCAGTCTAAAAGTCGAAAATGAGAGACGACGTCAGCATACACA
AAATTCCGTGCAGCGCAAATAAACACTACCATATGAGGGGGCTGGAGACT
CGAACATATGTCCTGCATCACCATGAGGCCGCGGAGGCTCCTACCACTAA
GGTTTCTCCTTCGATGTCCCGCTCTTTCCTGCTTGTATGTTGTTTCAGCA
GGGCAAGAAACATCCACGTGTGTTCGCGCACTACGTGTTGGGGCGATTGG
TGGCGCTCTTCTTTTTCTGTCACCCTGGAACATTGGCAACCTGTGATGGG
CAGGCGTATTTGTTAAACCGCTATCCTAACCGCGACCTCTTAACGACGGA
GGGCCAGATGGTGAGTAGTATGTACTTGATCTCGTGTGCCCAGATTTTCG
CGTACTGCACTTGAGTTGACTTGTATAAGACGGCTGGTAAATGTTTTCCG
TAGTTTCAATTTGTCCCATAGAGCAAAAATAGCAGAGCGTGGTTATTTTG
ACTGTTTGCCGCGGACTTGAACGTTGGATGTGTTGTGGTGTCAACTTGAA
ATTTGTTCTTGTGTGTTCTTTGAAAGAATACAGGGAACAGGGGGTTTAAT
CTGTATACTCCCCCCTGCCCCGCGTGCTTCGTGCATATCCGACGACTAAA
TTGCTGTAAGCTAGCACGTCGTTGTTCGTGCTAGTAGTGCTATAACTCGC
AGTGATTCTGGTCTAGGTCAAATTAGTCTACGATTTTGGGGCGACGCCCT
TTAAGTTCAACAACAAGTTCAAAACGTACGACACAAATCAGTGTTTTGCC
TTGTAGGCCAATATCTGTTGTATAGCGATGTTTTTTGGGGATGGGCAGTC
TTAGTGCTAACTGACTCCGTTACAGTTACCCCAGCATTCATCCTCATCCT
CAAACCTAACTTAACCCAAGCTGAACCCCTCAGTCGTGCGAACCACCCCG
ACACAGTCAACCAAGCGCGCTCTCCCAAACTCAACCCAACCCCACCGCCA
CTCCTTCCCCACACGACCCACGGCACATACATACACAGCAAGCCCAAAGG
CGCCAGATGACCCCTCGAAACCCCGATGACTATGCCATGCGCACGGGCGT
GCCGGACGAGTTTCTCCACGGTGATGTGGACAACTACACCCCAGATTGGG
CGCTATCCCTTGAAGAGCGGTTTCACAACACGGTCAAGGCTTGGTTATGT
CGTGGCTTGGCCGTCGCGAAGAAGGCGAGAGACACAGCGGCGGCGGCGGC
AGCCGGGGCTGTCACTCCGCCACTGCCAGCCATGGCGTTCGTGCCCTCTC
CTGCCGCCCGCGGCGCGATGGATATATGCCAGGCGCGCGCCAACGATCGG
CAGAAGCAGCGCTGGACGTCTATTGCGGAAATTGGCGGAGGGAATAATCG
TCGGTCTGCGTTGTACCGACTCCCCGCTGTAGCCCGCCGTAGTGGCTACC
ATGGCGCTGCTGCGCGCGGCAGCTGTCCTCATGGTGTAGAAATGTTACTG
GGTTTTCGCAGCCGCGGAGGATTCCCGGTCCGCCGGCGTATGTTTGGCGG
GGGCGCGAGCGTGGCCTCAATTTCCTCTGAGCGGCAGCAGCAACAGATAA
TGGACGGCAGTAATGGTGGTGGTGTTCGTGATGATGTACAAAACAGGCTG
ATGATTGGCGACGGAGGTGGTGTGGATAGCAGTAGTTCAGTAGAGGAAAC
GGCGGCGGTTGTGGGCACCTTGGCGGCCTCCCAGCGTCGTCCCGTTTCTA
GTGTTGCCGATGATGGTAAGAGGGGCCTATCTAGCGTCGACAGTGGGAAT
GAGAACAAAAATGTTATTTCCGTCTTTTTGGGAGGCGCGGCAGATGCGTA
TGACTCGGCACTGAGCTTTGTGGGGTGCGCATTGGTTACCTCGCCTCTAG
GCAAGCGCTATCTCAATGCCTATGACGCGCACACGAACACTGTGCCAGTT
TCTGCGATACGTGGAGTAGGTGGACCCCATTCCATGAGCGGGTGTTCCTA
TGACCTGGTTGGCTTCTCCAACATTGATCCTTTGGAGGCTAGTGCTCGCC
GAGGCGGCGGTTCAGCCAGTCGTCTGTAGAACGGCGAAGGTCTCCTTATT
TTTTCGTGGCTTGTTTCCAATGAGCCTGAGATGAAGGATGCAGGAAGAGG
GGGAGCGCTGTGTCGTGTACGCCGTGTGTCAGGGTTGTTTTTTCTTCCAT
GTACTGTTTCGTATGAACCGTGTCGTATGTACTGTGCCGTGCTACAATTC
ACAGTATTATCAACGTTGACGAAAGAGTGGGGAACCAATTGTTGTTAGAT
GTCGAGGTCGTGAGCCTAAAGGGGCGCAATTACGTGGGGAATTACGGAGG
TTGGTTTGGAACGTTTGAGGATTACGGTGCTCAAGCTGTGATTCCTTGAG
CTATCCGCAATTCTTTGTAGATAATTTGTGGTGCTTGATTTGGTCATAAT
AGAAATGGGCAGCCGTGGGTGCCCGGTCATATTGATTTTGATGAAAAATG
GTTCCTGGGACGGAGTCCGAAAGGACGCGCTCAAGGTCTAAGAAAAAATA
TATAGAAGTGGCTGCGAAGTTATTAGTCCAGGTAGCAACAATTGGCGTTA
ATGGTCGATGATACGACGCTTAGGCACAGAGGATTTTATTGCGATCGATC
AACAACTTGAGCGAAGCGGCACAAGATGCGAATGCGTTCTATTGACTAAT
GATTTTATGTTGAATATAAGGGAGATTGTCGTCAAGGCGGCACGTTTTCG
TGGTCATTGGACCTACGACTAAAAAGAGCGGAATCCTGGTGAAAGCATAT
CTTGGGGTGGTGGAGGCGGAAGAGGGGCAGAAGACACAAAAGCCTGTCGC
GCGAAAACCACGCTGGAAAAACTTTCTTATCCCGGGCCATTCCTGTCTAG
TCCCTTATTATGTATGTTGTTTGTCTTGAGGAGAGCAGACGTGGACATGA
AATTGTTTTGTTGAAATGGAGGGGGCAAGTGACGGGCGGGCATTGTGGAG
GGACGTGGTGAGCGAGAGCAAGATTGTCTCTTTTCTCGATGCCTGCTGTA
TGTACCGCGAGTGTGATGGGCAATCAGTTAGTGTAAGGAAGACAGAACAA
ACGGAGGTTGTGTTACTCGCACCGTCGTACGTGTGCTTGACTGTTGGAGG
TATATTGCGTATAGGTTTGTTGCCTGCACACAAGGAAGTGGTTATTTAGG
GTTGTCATTAAGTAGCAGCTCTAGGGCGGTTGGAGACACGGTCTGATTGC
AAGTGTTTTCATTGACATGGACAGAATGTATGGTTATTATTAATGTGTAG
GGATTTCATAGACGAGTTTGATTGGCAAAACTAACTTGGATACAGTAGAG
TAGAACAGCTGGTATATTTACGAAATGGGTTACAAGACATTCGACTCTTT
AGTGGGGCAAGGCGCTAACGATGTTGATTCGGTTGTCATGGTATGTTGTA
CTACTTGATGATTTCCTTCCTTGTCCACCAAACGGGGGAGAATTGATCGT
GTCTCTGACGGACAACAAATACGTATTTTTCGGGAGCAGTAGTAGAGACG
TCTCATCCAGTTTGGACATGATATGTATTTTCGCCGCTTTGTTTTAAACA
GAACAAGATAGTCTAGTAGAGGGTCGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig12683:1194..6020- >mRNA_H-paniculata_contig12683.1682.1 ID=mRNA_H-paniculata_contig12683.1682.1|Name=mRNA_H-paniculata_contig12683.1682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2442bp|location=Sequence derived from alignment at H-paniculata_contig12683:1194..6020- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCGATCAGCAAGTCAGATGGCTCGATCAGCAAGTCAGGGCAAGAA
ACATCCACGTGTGTTCGCGCACTACGTGTTGGGGCGATTGGTGGCGCTCT
TCTTTTTCTGTCACCCTGGAACATTGGCAACCTGTGATGGGCAGGCGTAT
TTGTTAAACCGCTATCCTAACCGCGACCTCTTAACGACGGAGGGCCAGAT
GGGCAAGAAACATCCACGTGTGTTCGCGCACTACGTGTTGGGGCGATTGG
TGGCGCTCTTCTTTTTCTGTCACCCTGGAACATTGGCAACCTGTGATGGG
CAGGCGTATTTGTTAAACCGCTATCCTAACCGCGACCTCTTAACGACGGA
GGGCCAGATGCAAGCCCAAAGGCGCCAGATGACCCCTCGAAACCCCGATG
ACTATGCCATGCGCACGGGCGTGCCGGACGAGTTTCTCCACGGTGATGTG
GACAACTACACCCCAGATTGGGCGCTATCCCTTGAAGAGCGGTTTCACAA
CACGGTCAAGGCTTGGTTATGTCGTGGCTTGGCCGTCGCGAAGAAGGCGA
GAGACACAGCGGCGGCGGCGGCAGCCGGGGCTGTCACTCCGCCACTGCCA
GCCATGGCGTTCGTGCCCTCTCCTGCCGCCCGCGGCGCGATGGATATATG
CCAGGCGCGCGCCAACGATCGGCAGAAGCAGCGCTGGACGTCTATTGCGG
AAATTGGCGGAGGGAATAATCGTCGGTCTGCGTTGTACCGACTCCCCGCT
GTAGCCCGCCGTAGTGGCTACCATGGCGCTGCTGCGCGCGGCAGCTGTCC
TCATGGTGTAGAAATGTTACTGGGTTTTCGCAGCCGCGGAGGATTCCCGG
TCCGCCGGCGTATGTTTGGCGGGGGCGCGAGCGTGGCCTCAATTTCCTCT
GAGCGGCAGCAGCAACAGATAATGGACGGCAGTAATGGTGGTGGTGTTCG
TGATGATGTACAAAACAGGCTGATGATTGGCGACGGAGGTGGTGTGGATA
GCAGTAGTTCAGTAGAGGAAACGGCGGCGGTTGTGGGCACCTTGGCGGCC
TCCCAGCGTCGTCCCGTTTCTAGTGTTGCCGATGATGGTAAGAGGGGCCT
ATCTAGCGTCGACAGTGGGAATGAGAACAAAAATGTTATTTCCGTCTTTT
TGGGAGGCGCGGCAGATGCGTATGACTCGGCACTGAGCTTTGTGGGGTGC
GCATTGGTTACCTCGCCTCTAGGCAAGCGCTATCTCAATGCCTATGACGC
GCACACGAACACTGTGCCAGTTTCTGCGATACGTGGAGTAGGTGGACCCC
ATTCCATGAGCGGGTGTTCCTATGACCTGGTTGGCTTCTCCAACATTGAT
CCTTTGGAGGCTAGTGCTCGCCGAGGCGGCGGTTCAGCCAGTCGTCTGTA
GCAAGCCCAAAGGCGCCAGATGACCCCTCGAAACCCCGATGACTATGCCA
TGCGCACGGGCGTGCCGGACGAGTTTCTCCACGGTGATGTGGACAACTAC
ACCCCAGATTGGGCGCTATCCCTTGAAGAGCGGTTTCACAACACGGTCAA
GGCTTGGTTATGTCGTGGCTTGGCCGTCGCGAAGAAGGCGAGAGACACAG
CGGCGGCGGCGGCAGCCGGGGCTGTCACTCCGCCACTGCCAGCCATGGCG
TTCGTGCCCTCTCCTGCCGCCCGCGGCGCGATGGATATATGCCAGGCGCG
CGCCAACGATCGGCAGAAGCAGCGCTGGACGTCTATTGCGGAAATTGGCG
GAGGGAATAATCGTCGGTCTGCGTTGTACCGACTCCCCGCTGTAGCCCGC
CGTAGTGGCTACCATGGCGCTGCTGCGCGCGGCAGCTGTCCTCATGGTGT
AGAAATGTTACTGGGTTTTCGCAGCCGCGGAGGATTCCCGGTCCGCCGGC
GTATGTTTGGCGGGGGCGCGAGCGTGGCCTCAATTTCCTCTGAGCGGCAG
CAGCAACAGATAATGGACGGCAGTAATGGTGGTGGTGTTCGTGATGATGT
ACAAAACAGGCTGATGATTGGCGACGGAGGTGGTGTGGATAGCAGTAGTT
CAGTAGAGGAAACGGCGGCGGTTGTGGGCACCTTGGCGGCCTCCCAGCGT
CGTCCCGTTTCTAGTGTTGCCGATGATGGTAAGAGGGGCCTATCTAGCGT
CGACAGTGGGAATGAGAACAAAAATGTTATTTCCGTCTTTTTGGGAGGCG
CGGCAGATGCGTATGACTCGGCACTGAGCTTTGTGGGGTGCGCATTGGTT
ACCTCGCCTCTAGGCAAGCGCTATCTCAATGCCTATGACGCGCACACGAA
CACTGTGCCAGTTTCTGCGATACGTGGAGTAGGTGGACCCCATTCCATGA
GCGGGTGTTCCTATGACCTGGTTGGCTTCTCCAACATTGATCCTTTGGAG
GCTAGTGCTCGCCGAGGCGGCGGTTCAGCCAGTCGTCTGTAG back to top
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