prot_H-paniculata_contig12509.1575.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig12509.1575.1
Unique Nameprot_H-paniculata_contig12509.1575.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length60
Homology
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BLAST of mRNA_H-paniculata_contig12509.1575.1 vs. uniprot
Match: A0A6H5J994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J994_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.300e-12
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 0 
Query:    1 ISACGRRGIWQESVRMLRDAREAG-----REVDVVTYSAAVAACRNGGAWPQALALLE 53
            IS CGR+G W++++ +LRDA+        R VDVVTYSAAVAACR+GG W QALAL+E
Sbjct:   11 ISLCGRQGGWEDAIFLLRDAQRLSSPGQLRGVDVVTYSAAVAACRDGGQWRQALALME 68
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BLAST of mRNA_H-paniculata_contig12509.1575.1 vs. uniprot
Match: D7FTF0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF0_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 3.450e-12
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 0 
Query:    1 ISACGRRGIWQESVRMLRDAREAG-----REVDVVTYSAAVAACRNGGAWPQALALLE 53
            IS CGR+G W+++V +LRDA+        R VDVVT+SAAVAACR+GG W QALAL+E
Sbjct:  109 ISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVTFSAAVAACRDGGEWRQALALME 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12509.1575.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J994_9PHAE1.300e-1260.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTF0_ECTSI3.450e-1260.34PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..57
e-value: 1.2E-8
score: 36.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12509contigH-paniculata_contig12509:373..552 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12509.1575.1mRNA_H-paniculata_contig12509.1575.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig12509 373..552 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig12509.1575.1 ID=prot_H-paniculata_contig12509.1575.1|Name=mRNA_H-paniculata_contig12509.1575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
ISACGRRGIWQESVRMLRDAREAGREVDVVTYSAAVAACRNGGAWPQALA
LLEASRIVI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf