mRNA_H-paniculata_contig12509.1575.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12509.1575.1
Unique NamemRNA_H-paniculata_contig12509.1575.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12509.1575.1 vs. uniprot
Match: A0A6H5J994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J994_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.300e-12
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 ISACGRRGIWQESVRMLRDAREAG-----REVDVVTYSAAVAACRNGGAWPQALALLE 159
            IS CGR+G W++++ +LRDA+        R VDVVTYSAAVAACR+GG W QALAL+E
Sbjct:   11 ISLCGRQGGWEDAIFLLRDAQRLSSPGQLRGVDVVTYSAAVAACRDGGQWRQALALME 68
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BLAST of mRNA_H-paniculata_contig12509.1575.1 vs. uniprot
Match: D7FTF0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF0_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 3.450e-12
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 ISACGRRGIWQESVRMLRDAREAG-----REVDVVTYSAAVAACRNGGAWPQALALLE 159
            IS CGR+G W+++V +LRDA+        R VDVVT+SAAVAACR+GG W QALAL+E
Sbjct:  109 ISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVTFSAAVAACRDGGEWRQALALME 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12509.1575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J994_9PHAE1.300e-1260.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTF0_ECTSI3.450e-1260.34PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12509contigH-paniculata_contig12509:373..552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog2880.D7FTF0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.2047155-CDS-H-paniculata_contig12509:372..5521622928971.2047155-CDS-H-paniculata_contig12509:372..552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12509 373..552 -
1691480686.816512-CDS-H-paniculata_contig12509:372..5521691480686.816512-CDS-H-paniculata_contig12509:372..552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12509 373..552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12509.1575.1prot_H-paniculata_contig12509.1575.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12509 373..552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12509.1575.1

>prot_H-paniculata_contig12509.1575.1 ID=prot_H-paniculata_contig12509.1575.1|Name=mRNA_H-paniculata_contig12509.1575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
ISACGRRGIWQESVRMLRDAREAGREVDVVTYSAAVAACRNGGAWPQALA
LLEASRIVI*
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mRNA from alignment at H-paniculata_contig12509:373..552-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12509.1575.1 ID=mRNA_H-paniculata_contig12509.1575.1|Name=mRNA_H-paniculata_contig12509.1575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig12509:373..552- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTCCGCGTGCGGACGGCGGGGCATCTGGCAAGAGTCCGTGCGGATGCT
GAGGGACGCTAGAGAGGCGGGTCGCGAAGTGGACGTGGTGACATACAGCG
CCGCGGTAGCTGCGTGCAGGAATGGCGGGGCATGGCCCCAGGCGTTGGCT
CTTCTAGAGGCAAGTAGGATTGTGATTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig12509:373..552-

>mRNA_H-paniculata_contig12509.1575.1 ID=mRNA_H-paniculata_contig12509.1575.1|Name=mRNA_H-paniculata_contig12509.1575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig12509:373..552- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTCCGCGTGCGGACGGCGGGGCATCTGGCAAGAGTCCGTGCGGATGCT
GAGGGACGCTAGAGAGGCGGGTCGCGAAGTGGACGTGGTGACATACAGCG
CCGCGGTAGCTGCGTGCAGGAATGGCGGGGCATGGCCCCAGGCGTTGGCT
CTTCTAGAGGCAAGTAGGATTGTGATTTAGATCTCCGCGTGCGGACGGCG
GGGCATCTGGCAAGAGTCCGTGCGGATGCTGAGGGACGCTAGAGAGGCGG
GTCGCGAAGTGGACGTGGTGACATACAGCGCCGCGGTAGCTGCGTGCAGG
AATGGCGGGGCATGGCCCCAGGCGTTGGCTCTTCTAGAGGCAAGTAGGAT
TGTGATTTAG
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