prot_H-paniculata_contig12488.1558.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig12488.1558.1
Unique Nameprot_H-paniculata_contig12488.1558.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length146
Homology
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BLAST of mRNA_H-paniculata_contig12488.1558.1 vs. uniprot
Match: A0A6H5KV47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV47_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 2.750e-29
Identity = 64/135 (47.41%), Postives = 89/135 (65.93%), Query Frame = 0 
Query:    4 RSSGGPYTGFFIALSLLTLLASIASVMVGDGITYLVVMETGGNCFDASTCSDYACAQRDCVCWEPDGTRTCAAEARSKLRYCLRFAGN-CADIGGSENLLLGSTIMLLMISSISLFAFLVAVATXXXXXRIIIVE 137
             +SGG  T F+  LSL+TL AS+ S+ +G+G T+L+V +  GNC D   C    C +  CVCWEPDGT  C+ +A S +RYC+ F G+ C+DI  SENLLLGS I+L++I+  S ++ +VAV T     R I+VE
Sbjct:   82 EASGGLATVFYALLSLVTLAASVVSIFLGEGATFLIVRDVNGNCRDGDDCPSDFCPEDACVCWEPDGTDVCS-DAGS-VRYCVPFGGDSCSDIKDSENLLLGSFIILVIIAFCSFWSLVVAVNTCWYCKRTIVVE 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12488.1558.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV47_9PHAE2.750e-2947.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..31
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..106
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 107..130
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 131..145
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..32
score: 0.687
NoneNo IPR availableTMHMMTMhelixcoord: 102..124
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12488contigH-paniculata_contig12488:920..5250 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12488.1558.1mRNA_H-paniculata_contig12488.1558.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig12488 887..6951 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig12488.1558.1 ID=prot_H-paniculata_contig12488.1558.1|Name=mRNA_H-paniculata_contig12488.1558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
MGDRSSGGPYTGFFIALSLLTLLASIASVMVGDGITYLVVMETGGNCFDA
STCSDYACAQRDCVCWEPDGTRTCAAEARSKLRYCLRFAGNCADIGGSEN
LLLGSTIMLLMISSISLFAFLVAVATCCCCKRIIIVEPISNYATR*
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