mRNA_H-paniculata_contig12488.1558.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12488.1558.1
Unique NamemRNA_H-paniculata_contig12488.1558.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12488.1558.1 vs. uniprot
Match: A0A6H5KV47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV47_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.730e-27
Identity = 69/149 (46.31%), Postives = 97/149 (65.10%), Query Frame = 1 
Query:    1 AISAGVAGACVMGDRSSGGPYTGFFIALSLLTLLASIASVMVGDGITYLVVMETGGNCFDASTCSDYACAQRDCVCWEPDGTRTCAAEARSKLRYCLRFAGN-CADIGGSENLLLGSTIMLLMISSISLFAFLVAVATXXXXXRIIIVE 444
            A++AG +G  V    +SGG  T F+  LSL+TL AS+ S+ +G+G T+L+V +  GNC D   C    C +  CVCWEPDGT  C+ +A S +RYC+ F G+ C+DI  SENLLLGS I+L++I+  S ++ +VAV T     R I+VE
Sbjct:   68 AMAAGTSGIYVTQGEASGGLATVFYALLSLVTLAASVVSIFLGEGATFLIVRDVNGNCRDGDDCPSDFCPEDACVCWEPDGTDVCS-DAGS-VRYCVPFGGDSCSDIKDSENLLLGSFIILVIIAFCSFWSLVVAVNTCWYCKRTIVVE 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12488.1558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV47_9PHAE1.730e-2746.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12488contigH-paniculata_contig12488:887..6951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_009130.1
Exons4
Model size2172
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12488.1558.1prot_H-paniculata_contig12488.1558.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12488 920..5250 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928967.9577289-UTR-H-paniculata_contig12488:886..9191622928967.9577289-UTR-H-paniculata_contig12488:886..919Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12488 887..919 +
1691480685.5870912-UTR-H-paniculata_contig12488:886..9191691480685.5870912-UTR-H-paniculata_contig12488:886..919Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12488 887..919 +
1622928968.415016-UTR-H-paniculata_contig12488:5250..69511622928968.415016-UTR-H-paniculata_contig12488:5250..6951Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12488 5251..6951 +
1691480685.6364298-UTR-H-paniculata_contig12488:5250..69511691480685.6364298-UTR-H-paniculata_contig12488:5250..6951Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12488 5251..6951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928967.9674177-CDS-H-paniculata_contig12488:919..10251622928967.9674177-CDS-H-paniculata_contig12488:919..1025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12488 920..1025 +
1691480685.6013515-CDS-H-paniculata_contig12488:919..10251691480685.6013515-CDS-H-paniculata_contig12488:919..1025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12488 920..1025 +
1622928968.195039-CDS-H-paniculata_contig12488:2247..23141622928968.195039-CDS-H-paniculata_contig12488:2247..2314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12488 2248..2314 +
1691480685.612542-CDS-H-paniculata_contig12488:2247..23141691480685.612542-CDS-H-paniculata_contig12488:2247..2314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12488 2248..2314 +
1622928968.389043-CDS-H-paniculata_contig12488:4361..44761622928968.389043-CDS-H-paniculata_contig12488:4361..4476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12488 4362..4476 +
1691480685.620255-CDS-H-paniculata_contig12488:4361..44761691480685.620255-CDS-H-paniculata_contig12488:4361..4476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12488 4362..4476 +
1622928968.4018476-CDS-H-paniculata_contig12488:5100..52501622928968.4018476-CDS-H-paniculata_contig12488:5100..5250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12488 5101..5250 +
1691480685.6280663-CDS-H-paniculata_contig12488:5100..52501691480685.6280663-CDS-H-paniculata_contig12488:5100..5250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12488 5101..5250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12488.1558.1

>prot_H-paniculata_contig12488.1558.1 ID=prot_H-paniculata_contig12488.1558.1|Name=mRNA_H-paniculata_contig12488.1558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
MGDRSSGGPYTGFFIALSLLTLLASIASVMVGDGITYLVVMETGGNCFDA
STCSDYACAQRDCVCWEPDGTRTCAAEARSKLRYCLRFAGNCADIGGSEN
LLLGSTIMLLMISSISLFAFLVAVATCCCCKRIIIVEPISNYATR*
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mRNA from alignment at H-paniculata_contig12488:887..6951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12488.1558.1 ID=mRNA_H-paniculata_contig12488.1558.1|Name=mRNA_H-paniculata_contig12488.1558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6065bp|location=Sequence derived from alignment at H-paniculata_contig12488:887..6951+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGATCTCTGCGGGGGTCGCAGGGGCATGCGTCATGGGCGATCGATCGTC
TGGGGGGCCGTACACCGGGTTCTTCATTGCGCTTTCCCTCCTCACCTTGC
TCGCCTCGATTGCGTCGGTTATGGTGGGAGACGGAATCAGTGAGTATGGG
AGTATGGATGGTCGCTGGTCCAGTACAATTCCGATATAGTACATACGGTG
GAGCCGTAGGGTCGATGCGCCGTGTTGCGCTCATGAGGGTCACATGTTGG
TTGGTAAATACTCGGGTATAATTCCTGCGATGTGTGTGTCTTCTGCCGTA
CAACATTTCTGTCTACGTAAGACAGGTGAGCCAGTTTGGTATCATCCTCG
TTCGCCCTCTACGTAAAGGGGTCTCTAGGGTAGCTTGGAAATTTTTATGG
CGAAGTAACTCCCTATATGGGCAAAAAATCTACGACCTATAGATATGGTA
TCTTCATTAGATTTCACCCTGCTATTTTTTTTCATGGCCTCTGTAGGGGT
GGTGGGTGACTGAGCGCAGCCTGCGAGATGCGCTTTTTGATTTGAGATTC
TAGCTTACAGGATATAGCTTCTGCCCGAGATCTCAATACCGTTGGGCTGA
TGACTTCAGTCGCACCGTTGTCGGCCTCACCTGTAGTTATATGTGCGTTG
GATGTGTTCGCTGGATAGATGGGAATATAGCTTTATTTGGTCTAAAACAC
TAGCCCGAGATCTTCACGAAGTCATGACGAAGCCAGCTGTTTGGGGCCAG
CGGCCGGCAGGAGTTTGCACTGATTTCCTTCCCCCCGGACACCTGCTCAT
CATGGACTGCAATAGGCGCCGCCGAGATGAGTTCGCCGTCGCGTCGGTGT
CCATTGCTTGCCTATACTTTTGCAGGCGGAAACAGGACGCCTAAGGTAGT
ACCGATCGAAATTGGAGGTGGATTGCTTCGGCGCCTTTGTTGGGGGGGGA
TTATGGTCCGCGTAGTCACTCATACTCCAATGTTTAGTTCTCCAGCCACG
TACAACATCCGTGAAGTTTTTTGTTTTCCAATTTTACTCGAGTATAGAGT
AAAAAAACTATTTAAGAGTGAAGATTTTAACCATATTTATCGTGTATGGA
TCTGATCGCATGGCAGGTTTTAGCTGAGCATTGCAGACAACACCTGCGTA
AAAACCGCCGCTCGAGAAGTAAACCTCAAAAGAGAGCCAACGTCTCTGCT
GGAGGTATCCTGCCCTGATATCAAACGGTCGCCGGTCGTTTCTTTTGTCT
CTCTCCTCTGTGTTTCATCGCTGCGGAAACGTGGACGGTTTTGGATGGGA
AATCGCCCTCTTGACAACGTACCCCTTTGAACCACGACGACCACCGACCG
AACGCAAGCAGCCTACCTGGTGGTAATGGAGACGGGTGGGAACTGCTTCG
ACGCTAGCACCTGTTCGGACTACGCCTGGTGAGCGCACGTGCACTGGTTA
CACTTGACGAATACAAAGGTTCTTTCATGTATGGATACAAAGGTTTTCAT
GGTATTCTCGTGTGTAACGGGTTGTCGGCATGTAGCGTACCTCCAACGTG
CCGCAAGTGACTATTAAATATATATTTTTTAATTGAAGTACGCCACCATC
CGGTTAACGTCTAATTCTAACCTTCAAGTGATTCTATTGTCTAGCCGAAT
GGACGGTTTCTGGAGCTCACCTGATGTTGATGCTCCCCTAAGCGTAGTCA
GTGTGTTGTTTTGCGGATTGATTAACAGTGAGCAAAAGCTACATCTCTCT
CTATATATATAGATGTATATTGCCTGTGTCCCATAAATCTGACTTATGAC
GGTATTTTGTAAATGTCTTTTGCAATTTGGGGTTTCGTGAAAAGTAACGA
ATATCATTCGAAAGCCTACACGTTCAGCTTGCATGTGGATATCGTCAAAA
TAGTTTCCAGCCTAACCCTAATCCTAACCTCAAGATTACAGAAGATATTT
ACAAAATACCGTTACAAGCCAGATTTATGGGACAGAAGCAGCATGTGGAT
ATACTTGGTCATGATTTATATTGCTGCGAATGAAGGAATAAATGAGTTCC
TTGCGCTCTTGTGCTATTATCGAATAGGGGGATTAAGTTAAGTCAGCCCC
GTTTGTAATCGGTTGGTTCTTGGTTCTTGGTTCTTGGTTCTTCCCATTGG
TGTATACAGGTAGTATGTTTTTGATTTGATTTTCGACTTCATTTTCAATG
TATCGGAACGCTCCGGGCTGGGCATTCCCTACGGCTTCTTGTGTGTGTGC
GCCCGCGTGTGTGTGTTTCGAATGCTCTGCGTTCTTGGTGTTTGCCTGCT
GGCTTACTGGGGGCAGATGTATATCAAGCTCGTTTTCTTGACAATGAAGC
AGCTTTCGAGACAAGGAAAGTTATGTCCTTCAAGAATCTTGTCGAAATCT
CTCATGAACATACACACATATATATATGGTTCGACACTGACAAGGTTTAA
GGTCTTGCATGTCGAGAATATATATATATATATATATATTTTTTTTTTCA
TAACCCGAAACGTGTGACAGGGGTAAGCGTGTCGGTTAAAACTGTACAAC
ATGAAAACGTCGCTCGGCAGCCCGAGCGCGCCAAACGCACTTGTGTGGGA
CGCTTTACTGCGCTGGAACCACCTTGCCCCAAGTGGGACATGCACAATAT
ATGTCCACCAGGTTTTTAAATGCTGTATTACCTTTTGATATCGCATCCCC
TGATATATTCTATTTTCAGACTCTATTTTCTAGATACTGACGGTGCTAGC
TCACGACATCGATAGCGGTATTGTTGGGAAGGTCTTGTTGAGATCTTTTG
ATATACTTGCTGCTCCGGCAGTGGAGGCTCTTGCTTCTCGAGAAAATGAG
CTTGGAAAAAAAATATCAGGGGGTGCGATATCCAAGGATGTACCTGTGGA
TAACGTCAATAGCATCCAGTTCACGTCTTATAAAATCAGAATTGCCAGTT
AACCTTCGTGGTATATCTCTACATCTAAATGGATCTTGCTAAGAACTTGA
GGTAAGCCCCGAAGACGCAAAAGCCATGCACACGATACCTGCAGGTTTAG
TGTAACTTGCACTTGTGATTTCTATCGGGCGTCAACGGAGTGGTGTCATG
CTTTGATTTTTTTGTTTTTGTTCTTCCTCTAAAATCCGCCCTGGTTTCAC
CCAAGCTGTCTTCCAATCGTCCCTTGCCAGCTTTTATTTTACTGATGCAA
GTTCCGGCCAGCACGGCAGACTCTCGTCGCGTGGTTTTTGTATCTCTCCC
TGCTCTTTTCATCACACATGACTATTTTGTGACGTTGAACGCGCATCACA
ACACTGCTTCATCAGCTATTTTCCACCAAACTTTGAGCATGCCGTCCACA
GCGCAAGAAAATGCATCTCACCGCCATTTATTTCGTGCACCAACAGTGTG
ATGAGCTTGGAGCTTGCGCCGTAAACACCCTTATCATCTGTTCTGTCGCC
GTTGTAACCCGCGGGTCGAATGTAGCGCGCAGCGTGACTGCGTCTGCTGG
GAGCCCGATGGGACCCGAACTTGCGCGGCTGAGGCACGGAGCAAATTGCG
ATATTGCTTGCGGTTCGCCGGAAATTGTGCAGACATTGGGGTGAGCAAGA
GCAGGCAGGCATCTTTACATCTTCTTTGCTCTCTGTACCCGCGATAACAT
GCTACGTAGAGTCGACTGAGAGCGGTTTCGTGCTGTTGGTAGTCTGTGGG
TATTCATTCTCGCTAGGGAGTGGTTCGTGCTTGCGGCGACCGTTCCGGGG
ATTGGTCGTGACTGATACACGAAATTGGTAAAAAAGTGATTTCTGTCGTT
TCCTTCATCTGTTGCGACGTCCGGTGTTCGACAGTCCATTCAACCTGTCA
AATAACGACCTATCTATTTTTTTCATCTCTAGTGTCGCGTGTCCAGTGTC
TAGATAGTGATGTCTTGCGCGGTAACCCCGTTGGAAGGAACAAAACACAG
CAGAGCTCGTTTCTTGCCCAGTGACGCGTTGTCAGTGATGCATTAACCCG
TGGAAGCAGGAGGCATGCTCTCTAGTGCCTCCTCGTGGCTTCTCTTCGAG
CCTTGAGTAATATTACTCCGCCCCCCCCAATGGGCGATCGGCCATCGGAA
ATCGCTTTCATAGGAACAAAGCTGTGTCCTCCCGAGGTATAACAACTACA
GCATGCAAAACGTAAGGAACCCTCTCCCCGTCCCTCCCCGCCGCCGTCCC
ATTGCCCAATATAGGGTTCCGAAAACCTGTTATTGGGGTCGACTATCATG
CTGCTAATGATCTCTTCGATCTCTTTATTTGCGTTTTTAGTCGCTGTGGC
TACGTGCTGTTGCTGCAAGCGAATTATAATCGTCGAGCCCATCAGCAACT
ACGCCACAAGATAACGCCAGGCGCGCGGGCGGGGGCAGGGGGGCTAAACC
ACTGCGGCATGCTGTGTTGGGGCTTATTGCTGTACCCGTGAACAGCACGC
AGTACCGAGCGCTGCGAAGGGCGGTCCCCCTGTCTGTACTGATTAATTCT
CTGCACACGGTTGTTCGAAAGTTAGGTTGAAGGATATGTGTTAGGTATGT
CTAAGTTTGATCGGATTGAGGGGAACCGGCGAGTGTGTGTCGGGGAGGGG
GTTGATGTTCCCCACGTGTCGAGTGCTTAGAGAGGTATGGTGGTGTCGAG
ACTGCGATGATGTTTTAAAGTTTTTGACTTTTTTTATGTTCATGTTATAT
GTGCGTGGGCGTGGGCGTGGGCGTGCGTTTTGCTTTTGCGCCACTTGTCG
TTCATAATGCCCTGACCAAGGCCGGAGGCTTGCTTCTTCGGTGCTGTTTG
TTTCTTGTTTCTTGTTGGGTGTTTTTGGCCACGTATCCTTCAACGATCGA
TGGCTAGCTAGCTGCTTTGTGCTTGTACATAATGCGCAGCAGCGTTGACC
TTGCCTAAGATTTTTTGAAACGTACTTGGGATTCTCGCCATGCGCAGAAA
GACAGAGAGTAAAGGGGTATGCCATTGAATGACGCTTTCGTTGTGTGTCA
TCCAAGTGTTGGGTCATTGCCCAAATTGAGTCCAGATGGAGGCTCCTCAC
TGGCGTGAGGTAGTAACGCTGAATTGCATCGCCATTATTCTTTCATTGCT
GTTTCTTTTTTCAATACATATCTGTTGATAAATAAATCTTGTTTTGAGAG
TTTTGTTTTTTAATTGTTTTACGGTGGGACAAGCTTTTTAACCCTAGGGA
ATTCGGTGGTGTCTCACCATCGAACACGACAATCTGGATAATGACATTTT
ATCGTGCTCTAGTTTTTTTTGGTCGTTGCCTTGATGCAGGGTTGGCAGCG
AGGAGATATTTCGCGTGACGTAGATGTGTAGTAGTAGTAGCGCTCCGTAA
CACTTTGAGCCGTGCTTACTACAGCACGGGCACGACAGGTGGTGCTGAGT
CGGGTATGCATCAAAATATTGGACGCAAGATTTCCACGGAGCCACAGGGG
GGGAAGTTATGCTATGAACCGTTCTGTTTTCTGACTAGATTTTTGTTCAC
AGCGGCAAGGAGATTGCAGGGTGTGGTGCAGCGCTGTGTTGTGTTGTGGT
CCAGACTGCCAAACACTGCTCGTCGGTAACCTCTAGGGCTCTTGTGGATG
GATGCGTGAGCGAGAAGCGAAGCGCGGCTCCTGCGTAGTGAGGGGGGCGA
TAGCGACATCAATAACAAACTCGTGAGTGTTGTAAAAGCTGTAGGCAGGT
ATCGTGGTTTACGGGAATGATATTCAAAGTAGAAGGGTGTTCAGATGCGT
GTCGTCCGCCTTCAGCCCAGTTTTTCAGGAGCTGTTTCTCTTTAGCTAAA
TTTTGCTGGGAATATTCGGGAGAGCATTGTGCTCGTCGGTGCGTCTCAAC
ATCAGATGCATACTACTGTATTGATCTCTGCTAGCCCCCCCCCCCCTTAA
GCCGCCGTTTTTGCGCAGTTCGGATTTTCGCAGATGAAAACGACAGATTG
GTCGCGTATTGGCCGGAATAAATGTTGTATTTCTAGGCTGATTATAAACA
TTGGGAACTTCGAGGATTTCATAATCAAGAATGTTTATTTCGATATACAC
ATACATTGGGGGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig12488:887..6951+

>mRNA_H-paniculata_contig12488.1558.1 ID=mRNA_H-paniculata_contig12488.1558.1|Name=mRNA_H-paniculata_contig12488.1558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig12488:887..6951+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGATCGATCGTCTGGGGGGCCGTACACCGGGTTCTTCATTGCGCT
TTCCCTCCTCACCTTGCTCGCCTCGATTGCGTCGGTTATGGTGGGAGACG
GAATCAATGGGCGATCGATCGTCTGGGGGGCCGTACACCGGGTTCTTCAT
TGCGCTTTCCCTCCTCACCTTGCTCGCCTCGATTGCGTCGGTTATGGTGG
GAGACGGAATCACCTACCTGGTGGTAATGGAGACGGGTGGGAACTGCTTC
GACGCTAGCACCTGTTCGGACTACGCCTGCCTACCTGGTGGTAATGGAGA
CGGGTGGGAACTGCTTCGACGCTAGCACCTGTTCGGACTACGCCTGCGCG
CAGCGTGACTGCGTCTGCTGGGAGCCCGATGGGACCCGAACTTGCGCGGC
TGAGGCACGGAGCAAATTGCGATATTGCTTGCGGTTCGCCGGAAATTGTG
CAGACATTGGGCGCGCAGCGTGACTGCGTCTGCTGGGAGCCCGATGGGAC
CCGAACTTGCGCGGCTGAGGCACGGAGCAAATTGCGATATTGCTTGCGGT
TCGCCGGAAATTGTGCAGACATTGGGGGTTCCGAAAACCTGTTATTGGGG
TCGACTATCATGCTGCTAATGATCTCTTCGATCTCTTTATTTGCGTTTTT
AGTCGCTGTGGCTACGTGCTGTTGCTGCAAGCGAATTATAATCGTCGAGC
CCATCAGCAACTACGCCACAAGATAAGGTTCCGAAAACCTGTTATTGGGG
TCGACTATCATGCTGCTAATGATCTCTTCGATCTCTTTATTTGCGTTTTT
AGTCGCTGTGGCTACGTGCTGTTGCTGCAAGCGAATTATAATCGTCGAGC
CCATCAGCAACTACGCCACAAGATAA
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