prot_H-paniculata_contig12338.1476.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig12338.1476.1
Unique Nameprot_H-paniculata_contig12338.1476.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length225
Homology
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BLAST of mRNA_H-paniculata_contig12338.1476.1 vs. uniprot
Match: A0A6H5KAS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS6_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.680e-22
Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 0 
Query:    4 GYLYKRRDTLRGRFAYRRRSVVLRF-PPASANVDV----AAFGGRKATPPAPTLSLLKGVGLGECEKIISLEGAEVTLGKTKSGDLYPFVITFPNLPAQQTQEIQTRS 106
            G LYKRRDTLRGRFAYR++  VLRF PP +A++      + FGG    PP PTL+LLKG G  E  K++SLEGAEVTLG   +G+LYPFVI+FP+     T    TRS
Sbjct:  587 GVLYKRRDTLRGRFAYRQQYAVLRFEPPEAASLSSLRRESGFGGVPLRPPPPTLTLLKGRGKSETGKVMSLEGAEVTLGTAMAGNLYPFVISFPSTAPAPTTISPTRS 694
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BLAST of mRNA_H-paniculata_contig12338.1476.1 vs. uniprot
Match: D7FK06_ECTSI (CRAL/TRIO domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK06_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.020e-13
Identity = 47/95 (49.47%), Postives = 58/95 (61.05%), Query Frame = 0 
Query:    4 GYLYKRRDTLRGRFAYRRRSVVLRF-PPASANVDV----AAFGGRKATPPAPTLSLLKGVGLGECEKIISLEGAEVTLGKTKSGDLYPFVITFPN 93
            G LYKRRDTLRGRFAYR++  VLRF PP + ++      +  GG                   E EK++SLEGAEVTLG   +GDLYPFVI+FP+
Sbjct:  601 GVLYKRRDTLRGRFAYRQQYAVLRFAPPEATSLSSLRRESGSGGVPXXXXXXXXXXXXXXXXSETEKVMSLEGAEVTLGTAMAGDLYPFVISFPS 695
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12338.1476.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAS6_9PHAE2.680e-2256.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK06_ECTSI2.020e-1349.47CRAL/TRIO domain containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12338contigH-paniculata_contig12338:415..1753 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12338.1476.1mRNA_H-paniculata_contig12338.1476.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig12338 415..1753 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig12338.1476.1 ID=prot_H-paniculata_contig12338.1476.1|Name=mRNA_H-paniculata_contig12338.1476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=225bp
MCQGYLYKRRDTLRGRFAYRRRSVVLRFPPASANVDVAAFGGRKATPPAP
TLSLLKGVGLGECEKIISLEGAEVTLGKTKSGDLYPFVITFPNLPAQQTQ
EIQTRSRSQSFSRQPSPRPPSITPPPRHHHRAPSSSFPNGVSRRNTEDFT
FPGTSIDPIDAETAAMSSTKNKRHHHERHSTGVTTTTSTTTTTMTMSTKA
SHANGNKDVRDQGLDPSASAKSLGG
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