mRNA_H-paniculata_contig12338.1476.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12338.1476.1
Unique NamemRNA_H-paniculata_contig12338.1476.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig12338.1476.1 vs. uniprot
Match: A0A6H5KAS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS6_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.680e-22
Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:   10 GYLYKRRDTLRGRFAYRRRSVVLRF-PPASANVDV----AAFGGRKATPPAPTLSLLKGVGLGECEKIISLEGAEVTLGKTKSGDLYPFVITFPNLPAQQTQEIQTRS 318
            G LYKRRDTLRGRFAYR++  VLRF PP +A++      + FGG    PP PTL+LLKG G  E  K++SLEGAEVTLG   +G+LYPFVI+FP+     T    TRS
Sbjct:  587 GVLYKRRDTLRGRFAYRQQYAVLRFEPPEAASLSSLRRESGFGGVPLRPPPPTLTLLKGRGKSETGKVMSLEGAEVTLGTAMAGNLYPFVISFPSTAPAPTTISPTRS 694
[Close]
BLAST of mRNA_H-paniculata_contig12338.1476.1 vs. uniprot
Match: D7FK06_ECTSI (CRAL/TRIO domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK06_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.020e-13
Identity = 47/95 (49.47%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:   10 GYLYKRRDTLRGRFAYRRRSVVLRF-PPASANVDV----AAFGGRKATPPAPTLSLLKGVGLGECEKIISLEGAEVTLGKTKSGDLYPFVITFPN 279
            G LYKRRDTLRGRFAYR++  VLRF PP + ++      +  GG                   E EK++SLEGAEVTLG   +GDLYPFVI+FP+
Sbjct:  601 GVLYKRRDTLRGRFAYRQQYAVLRFAPPEATSLSSLRRESGSGGVPXXXXXXXXXXXXXXXXSETEKVMSLEGAEVTLGTAMAGDLYPFVISFPS 695
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12338.1476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAS6_9PHAE2.680e-2256.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK06_ECTSI2.020e-1349.47CRAL/TRIO domain containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12338contigH-paniculata_contig12338:415..1753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue3.8e-13
Seed eggNOG ortholog2880.D7FK06
KEGG koko:K15335,ko:K19625
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
EC2.1.1.203
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons2
Model size675
Cds size675
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928955.3546143-CDS-H-paniculata_contig12338:414..6241622928955.3546143-CDS-H-paniculata_contig12338:414..624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12338 415..624 +
1691480680.6776521-CDS-H-paniculata_contig12338:414..6241691480680.6776521-CDS-H-paniculata_contig12338:414..624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12338 415..624 +
1622928955.3682086-CDS-H-paniculata_contig12338:1288..17531622928955.3682086-CDS-H-paniculata_contig12338:1288..1753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12338 1289..1753 +
1691480680.6896741-CDS-H-paniculata_contig12338:1288..17531691480680.6896741-CDS-H-paniculata_contig12338:1288..1753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12338 1289..1753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12338.1476.1prot_H-paniculata_contig12338.1476.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12338 415..1753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12338.1476.1

>prot_H-paniculata_contig12338.1476.1 ID=prot_H-paniculata_contig12338.1476.1|Name=mRNA_H-paniculata_contig12338.1476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=225bp
MCQGYLYKRRDTLRGRFAYRRRSVVLRFPPASANVDVAAFGGRKATPPAP
TLSLLKGVGLGECEKIISLEGAEVTLGKTKSGDLYPFVITFPNLPAQQTQ
EIQTRSRSQSFSRQPSPRPPSITPPPRHHHRAPSSSFPNGVSRRNTEDFT
FPGTSIDPIDAETAAMSSTKNKRHHHERHSTGVTTTTSTTTTTMTMSTKA
SHANGNKDVRDQGLDPSASAKSLGG
back to top

mRNA from alignment at H-paniculata_contig12338:415..1753+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12338.1476.1 ID=mRNA_H-paniculata_contig12338.1476.1|Name=mRNA_H-paniculata_contig12338.1476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1339bp|location=Sequence derived from alignment at H-paniculata_contig12338:415..1753+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCCAGGGGTACCTGTATAAGCGAAGAGACACGCTGCGAGGTCGGTT
CGCGTATCGGCGACGGTCCGTCGTTCTGCGGTTCCCTCCCGCATCCGCTA
ACGTGGATGTTGCCGCGTTCGGGGGAAGAAAGGCGACGCCTCCGGCACCG
ACGCTGTCGCTTCTTAAGGGTGTAGGCCTGGGGGAGTGCGAAAAGATTAT
TTCGCTCGAGGTGTGGCGCGTACATGAGTAATCTCGGTGTGATCAATTGT
GTAGTATTGGCGAGATTTGAGAACAACGTGTGTACCTGAAAAAACGAAAC
AAAAGGTCTATTGGCTTCATCTGTCGCTTTAATGTGATGATATACCAGAC
CAAACTTGGATTGATATTCGAGCTGCGAAATATGCAGTGTGCGTAGGTTG
TTATTGTGGGTGATTTGTTGCGGAGTGTAAGTACGTGTGTCCCTGTGTTA
GAGGAGGCATCGCACTCCTTGAATGCTGACCATGGCGGGCAGGGGGATTG
TACCCTTTTTTTCGCCAACACCCTCTCTGTACTTTGACTTGCGCAGTTTA
GCTTCCGCTTTTCTCGCCTCCGCCCGGTTCGGTTCGGTTCGGTTCGGTTT
GTTTAGTTCGGTGTAACGCAAGAATACCATTCCCCTGACAACTCGCTGCT
ATCGGGGTTTTTTTCTCTTTCCGTGATGTAAATTAGTGCTTGTGGAGTAA
GATATCTTTATCTTGAAGAAATTCAATCAGGCGAGTGATGCAATTTCTCA
ATATTTTCGTGTGCCGCTTCGTGTCTGACTGTCTGCATGTACTTTTTTGA
AACATCCATGTGCGTTCTGAGAGTTCTCACACCGCCCCTCTCCCCGCTTC
CCCCCCCCCCAAACAATTAAACAGGGCGCGGAGGTAACGCTTGGCAAGAC
TAAGAGCGGAGACCTCTACCCGTTCGTCATCACCTTCCCGAACCTGCCCG
CGCAGCAGACCCAAGAGATCCAGACGCGATCCCGCTCCCAGTCTTTTTCA
CGACAACCGTCGCCGCGACCACCATCAATTACACCACCACCACGTCACCA
CCACCGAGCGCCCTCTTCTTCTTTTCCCAACGGGGTCTCTCGACGCAACA
CTGAGGATTTTACATTTCCGGGAACGAGCATAGATCCCATCGACGCTGAA
ACCGCCGCGATGTCATCCACCAAAAACAAACGCCATCACCACGAGCGTCA
CAGCACAGGGGTTACAACAACAACATCAACAACGACCACGACGATGACGA
TGTCAACAAAGGCCAGTCACGCGAACGGGAACAAAGACGTTCGGGATCAA
GGACTCGACCCCAGCGCGAGCGCTAAAAGCCTTGGCGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12338:415..1753+

>mRNA_H-paniculata_contig12338.1476.1 ID=mRNA_H-paniculata_contig12338.1476.1|Name=mRNA_H-paniculata_contig12338.1476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1350bp|location=Sequence derived from alignment at H-paniculata_contig12338:415..1753+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCCAGGGGTACCTGTATAAGCGAAGAGACACGCTGCGAGGTCGGTT
CGCGTATCGGCGACGGTCCGTCGTTCTGCGGTTCCCTCCCGCATCCGCTA
ACGTGGATGTTGCCGCGTTCGGGGGAAGAAAGGCGACGCCTCCGGCACCG
ACGCTGTCGCTTCTTAAGGGTGTAGGCCTGGGGGAGTGCGAAAAGATTAT
TTCGCTCGAGATGTGCCAGGGGTACCTGTATAAGCGAAGAGACACGCTGC
GAGGTCGGTTCGCGTATCGGCGACGGTCCGTCGTTCTGCGGTTCCCTCCC
GCATCCGCTAACGTGGATGTTGCCGCGTTCGGGGGAAGAAAGGCGACGCC
TCCGGCACCGACGCTGTCGCTTCTTAAGGGTGTAGGCCTGGGGGAGTGCG
AAAAGATTATTTCGCTCGAGGGCGCGGAGGTAACGCTTGGCAAGACTAAG
AGCGGAGACCTCTACCCGTTCGTCATCACCTTCCCGAACCTGCCCGCGCA
GCAGACCCAAGAGATCCAGACGCGATCCCGCTCCCAGTCTTTTTCACGAC
AACCGTCGCCGCGACCACCATCAATTACACCACCACCACGTCACCACCAC
CGAGCGCCCTCTTCTTCTTTTCCCAACGGGGTCTCTCGACGCAACACTGA
GGATTTTACATTTCCGGGAACGAGCATAGATCCCATCGACGCTGAAACCG
CCGCGATGTCATCCACCAAAAACAAACGCCATCACCACGAGCGTCACAGC
ACAGGGGTTACAACAACAACATCAACAACGACCACGACGATGACGATGTC
AACAAAGGCCAGTCACGCGAACGGGAACAAAGACGTTCGGGATCAAGGAC
TCGACCCCAGCGCGAGCGCTAAAAGCCTTGGCGGCGGCGCGGAGGTAACG
CTTGGCAAGACTAAGAGCGGAGACCTCTACCCGTTCGTCATCACCTTCCC
GAACCTGCCCGCGCAGCAGACCCAAGAGATCCAGACGCGATCCCGCTCCC
AGTCTTTTTCACGACAACCGTCGCCGCGACCACCATCAATTACACCACCA
CCACGTCACCACCACCGAGCGCCCTCTTCTTCTTTTCCCAACGGGGTCTC
TCGACGCAACACTGAGGATTTTACATTTCCGGGAACGAGCATAGATCCCA
TCGACGCTGAAACCGCCGCGATGTCATCCACCAAAAACAAACGCCATCAC
CACGAGCGTCACAGCACAGGGGTTACAACAACAACATCAACAACGACCAC
GACGATGACGATGTCAACAAAGGCCAGTCACGCGAACGGGAACAAAGACG
TTCGGGATCAAGGACTCGACCCCAGCGCGAGCGCTAAAAGCCTTGGCGGC
back to top