prot_H-paniculata_contig1230.1459.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1230.1459.1
Unique Nameprot_H-paniculata_contig1230.1459.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length117
Homology
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.070e-22
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 0
Query:    5 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 114
            I + EPEP S+  A  SK+A  W K+M +E E L+ A TF+   ++PEGC+V+D++WV K K D  G   +AK+R+V KG+ Q+ G+DY  T + TA+A S RL+  + C
Sbjct:  206 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 315          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.100e-22
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 0
Query:    5 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 114
            I + EPEP S+  A  SK+A  W K+M +E E L+ A TF+   ++PEGC+V+D++WV K K D  G   +AK+R+V KG+ Q+ G+DY  T + TA+A S RL+  + C
Sbjct:  411 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 520          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.100e-22
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 0
Query:    5 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 114
            I + EPEP S+  A  SK+A  W K+M +E E L+ A TF+   ++PEGC+V+D++WV K K D  G   +AK+R+V KG+ Q+ G+DY  T + TA+A S RL+  + C
Sbjct:  475 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 584          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.100e-22
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 0
Query:    5 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 114
            I + EPEP S+  A  SK+A  W K+M +E E L+ A TF+   ++PEGC+V+D++WV K K D  G   +AK+R+V KG+ Q+ G+DY  T + TA+A S RL+  + C
Sbjct:  619 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 728          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.120e-22
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 0
Query:    5 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 114
            I + EPEP S+  A  SK+A  W K+M +E E L+ A TF+   ++PEGC+V+D++WV K K D  G   +AK+R+V KG+ Q+ G+DY  T + TA+A S RL+  + C
Sbjct:  825 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 934          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.440e-21
Identity = 47/110 (42.73%), Postives = 72/110 (65.45%), Query Frame = 0
Query:    5 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 114
            I + +PEP S+  A  +K+A  W K+M +E E L+ A TF+   ++PEGC+V+D++WV K K D  G   +AK+R+V KG+ Q+ G+DY  T + TA+A S RL+  + C
Sbjct:  139 IQDVKPEPGSYQEALRAKHATIWDKAMCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 248          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A4U1CT94_9BACI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Robertmurraya kyonggiensis TaxID=1037680 RepID=A0A4U1CT94_9BACI)

HSP 1 Score: 85.5 bits (210), Expect = 4.510e-17
Identity = 42/105 (40.00%), Postives = 69/105 (65.71%), Query Frame = 0
Query:    9 EPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIV 113
            E +PT+F AA  S+++ +W K+M+ E + + +   + +L E+PEG   V  KWV+K+K DS+G   R K+R+V KGY+Q+EGIDY+ T +  +   S R++  +V
Sbjct:  328 EDDPTTFEAAMRSEHSSKWLKAMEDEMQSMSSNGVW-DLVEIPEGAKTVGCKWVYKTKRDSKGNIERYKARLVAKGYTQKEGIDYNETFSPVSCKDSFRVIMAVV 431          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5JJC4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC4_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 5.490e-17
Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = 0
Query:    5 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 114
            I + E EP  +  A  S +A  W K+M   FE L+ A TF+   + P  C+V+D++WV+K   D  G   +AK+R+V KG+ Q+ G+DY  T + TA+A S RLL  + C
Sbjct:    8 IQDVETEPGRYREARQSMHAVIWDKAMSEAFEGLLRAGTFALAVKAPISCNVIDARWVYKWISDETGKTEKAKARLVAKGFEQKHGVDYLETFSPTANAASIRLLVALTC 117          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: UPI0016610B54 (hypothetical protein n=1 Tax=Serratia marcescens TaxID=615 RepID=UPI0016610B54)

HSP 1 Score: 79.0 bits (193), Expect = 2.520e-16
Identity = 39/107 (36.45%), Postives = 66/107 (61.68%), Query Frame = 0
Query:   11 EPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVCLLD 117
            +PTSF  A  S ++ +W K+M+ E + +     + +L  +P+G   V  KW++K+K+DSQG   R K+R+V KG++Q+EGIDY+ T +  +   S R++  +V   D
Sbjct:    4 DPTSFEEAMRSDHSSKWLKAMEDEMKSMSTNKVW-DLEIIPKGAKTVGCKWIYKTKYDSQGNIERFKARLVAKGFTQREGIDYNETFSPVSCKDSFRIIMALVAHYD 109          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: UPI001C9C900A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9C900A)

HSP 1 Score: 78.2 bits (191), Expect = 4.790e-16
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 0
Query:   11 EPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVCL 115
            EP SF  A  ++ +++WK++M+ E + L+    + ELT+ P+   +VD+KW  K K D  G   R K+R+V +G+SQQEGIDYH T +      S R +  I  +
Sbjct:   39 EPNSFKEAVENENSEKWKRAMNEEIKALLKNQVW-ELTDAPKNRRIVDNKWTFKIKRDENGNIKRFKARLVARGFSQQEGIDYHETFSPVVRFDSIRAILAIAAI 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV80_9PHAE1.070e-2244.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LDZ0_9PHAE1.100e-2244.55CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE1.100e-2244.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE1.100e-2244.55CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE1.120e-2244.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP36_9PHAE2.440e-2142.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4U1CT94_9BACI4.510e-1740.00Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JJC4_9PHAE5.490e-1740.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0016610B542.520e-1636.45hypothetical protein n=1 Tax=Serratia marcescens T... [more]
UPI001C9C900A4.790e-1638.10uncharacterized mitochondrial protein AtMg00820-li... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 46..112
e-value: 8.0E-10
score: 38.8
NoneNo IPR availablePANTHERPTHR11439:SF264coord: 11..110
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 11..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1230contigH-paniculata_contig1230:11241..11591 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1230.1459.1mRNA_H-paniculata_contig1230.1459.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1230 11241..11591 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1230.1459.1 ID=prot_H-paniculata_contig1230.1459.1|Name=mRNA_H-paniculata_contig1230.1459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
STCTIAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEV
PEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLART
ASATSNRLLAVIVCLLD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like