mRNA_H-paniculata_contig1230.1459.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.070e-22 Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1 Query: 13 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 342 I + EPEP S+ A SK+A W K+M +E E L+ A TF+ ++PEGC+V+D++WV K K D G +AK+R+V KG+ Q+ G+DY T + TA+A S RL+ + C Sbjct: 206 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 315
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.100e-22 Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1 Query: 13 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 342 I + EPEP S+ A SK+A W K+M +E E L+ A TF+ ++PEGC+V+D++WV K K D G +AK+R+V KG+ Q+ G+DY T + TA+A S RL+ + C Sbjct: 411 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 520
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.100e-22 Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1 Query: 13 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 342 I + EPEP S+ A SK+A W K+M +E E L+ A TF+ ++PEGC+V+D++WV K K D G +AK+R+V KG+ Q+ G+DY T + TA+A S RL+ + C Sbjct: 475 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 584
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.100e-22 Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1 Query: 13 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 342 I + EPEP S+ A SK+A W K+M +E E L+ A TF+ ++PEGC+V+D++WV K K D G +AK+R+V KG+ Q+ G+DY T + TA+A S RL+ + C Sbjct: 619 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 728
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.120e-22 Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1 Query: 13 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 342 I + EPEP S+ A SK+A W K+M +E E L+ A TF+ ++PEGC+V+D++WV K K D G +AK+R+V KG+ Q+ G+DY T + TA+A S RL+ + C Sbjct: 825 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 934
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 2.440e-21 Identity = 47/110 (42.73%), Postives = 72/110 (65.45%), Query Frame = 1 Query: 13 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 342 I + +PEP S+ A +K+A W K+M +E E L+ A TF+ ++PEGC+V+D++WV K K D G +AK+R+V KG+ Q+ G+DY T + TA+A S RL+ + C Sbjct: 139 IQDVKPEPGSYQEALRAKHATIWDKAMCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 248
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: UPI001C9C900A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9C900A) HSP 1 Score: 78.2 bits (191), Expect = 4.790e-16 Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 31 EPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVCL 345 EP SF A ++ +++WK++M+ E + L+ + ELT+ P+ +VD+KW K K D G R K+R+V +G+SQQEGIDYH T + S R + I + Sbjct: 39 EPNSFKEAVENENSEKWKRAMNEEIKALLKNQVW-ELTDAPKNRRIVDNKWTFKIKRDENGNIKRFKARLVARGFSQQEGIDYHETFSPVVRFDSIRAILAIAAI 142
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 5.510e-15 Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 1 Query: 13 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEG 270 I + EPEP S+ A SK+A W K+M +E E L+ A TF+ ++PEGC+V+D++WV K K D G + K+R+V KG+ Q+ G Sbjct: 801 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKTKARLVAKGFRQKHG 886
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A5N6M6A7_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M6A7_9ASTR) HSP 1 Score: 79.0 bits (193), Expect = 9.830e-15 Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 1 Query: 79 WKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVI 336 W+K+M E E L T++ L E+PEG HV+DSKWV+K K+ G R K+R++ KG++Q EGIDYH T A A + R L I Sbjct: 226 WRKAMQREIEALEQNETWT-LEELPEGKHVIDSKWVYKIKYKPNGDIERYKARLIAKGFTQVEGIDYHDTFAPVAKLVTVRCLLSI 310
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A8H5KHP2_GIBSU (Retrotransposon Ty1-copia subclass n=2 Tax=Fusarium fujikuroi species complex TaxID=171627 RepID=A0A8H5KHP2_GIBSU) HSP 1 Score: 76.6 bits (187), Expect = 6.710e-14 Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 1 Query: 25 EPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFS--ELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLL 327 EPEPT++AAA + W++++ +E + TF +L+E+PE C + S+WV K K + G+ R K+R+V KGY+Q+EGIDY T + ATS R+L Sbjct: 1490 EPEPTTYAAAMKCAESSHWERAIYAEKQSHDENGTFLIVDLSEIPEECVPLHSRWVFKKKLNQFGVIKRYKARLVIKGYAQREGIDYEETFSAVIKATSYRIL 1592 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1230.1459.1 >prot_H-paniculata_contig1230.1459.1 ID=prot_H-paniculata_contig1230.1459.1|Name=mRNA_H-paniculata_contig1230.1459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp STCTIAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVback to top mRNA from alignment at H-paniculata_contig1230:11241..11591- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1230.1459.1 ID=mRNA_H-paniculata_contig1230.1459.1|Name=mRNA_H-paniculata_contig1230.1459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig1230:11241..11591- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1230:11241..11591- >mRNA_H-paniculata_contig1230.1459.1 ID=mRNA_H-paniculata_contig1230.1459.1|Name=mRNA_H-paniculata_contig1230.1459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig1230:11241..11591- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |