mRNA_H-paniculata_contig1230.1459.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1230.1459.1
Unique NamemRNA_H-paniculata_contig1230.1459.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.070e-22
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   13 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 342
            I + EPEP S+  A  SK+A  W K+M +E E L+ A TF+   ++PEGC+V+D++WV K K D  G   +AK+R+V KG+ Q+ G+DY  T + TA+A S RL+  + C
Sbjct:  206 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 315          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.100e-22
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   13 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 342
            I + EPEP S+  A  SK+A  W K+M +E E L+ A TF+   ++PEGC+V+D++WV K K D  G   +AK+R+V KG+ Q+ G+DY  T + TA+A S RL+  + C
Sbjct:  411 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 520          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.100e-22
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   13 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 342
            I + EPEP S+  A  SK+A  W K+M +E E L+ A TF+   ++PEGC+V+D++WV K K D  G   +AK+R+V KG+ Q+ G+DY  T + TA+A S RL+  + C
Sbjct:  475 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 584          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.100e-22
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   13 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 342
            I + EPEP S+  A  SK+A  W K+M +E E L+ A TF+   ++PEGC+V+D++WV K K D  G   +AK+R+V KG+ Q+ G+DY  T + TA+A S RL+  + C
Sbjct:  619 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 728          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.120e-22
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   13 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 342
            I + EPEP S+  A  SK+A  W K+M +E E L+ A TF+   ++PEGC+V+D++WV K K D  G   +AK+R+V KG+ Q+ G+DY  T + TA+A S RL+  + C
Sbjct:  825 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 934          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.440e-21
Identity = 47/110 (42.73%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   13 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVC 342
            I + +PEP S+  A  +K+A  W K+M +E E L+ A TF+   ++PEGC+V+D++WV K K D  G   +AK+R+V KG+ Q+ G+DY  T + TA+A S RL+  + C
Sbjct:  139 IQDVKPEPGSYQEALRAKHATIWDKAMCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC 248          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: UPI001C9C900A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9C900A)

HSP 1 Score: 78.2 bits (191), Expect = 4.790e-16
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   31 EPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVIVCL 345
            EP SF  A  ++ +++WK++M+ E + L+    + ELT+ P+   +VD+KW  K K D  G   R K+R+V +G+SQQEGIDYH T +      S R +  I  +
Sbjct:   39 EPNSFKEAVENENSEKWKRAMNEEIKALLKNQVW-ELTDAPKNRRIVDNKWTFKIKRDENGNIKRFKARLVARGFSQQEGIDYHETFSPVVRFDSIRAILAIAAI 142          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 5.510e-15
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 1
Query:   13 IAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEG 270
            I + EPEP S+  A  SK+A  W K+M +E E L+ A TF+   ++PEGC+V+D++WV K K D  G   + K+R+V KG+ Q+ G
Sbjct:  801 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKTKARLVAKGFRQKHG 886          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A5N6M6A7_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M6A7_9ASTR)

HSP 1 Score: 79.0 bits (193), Expect = 9.830e-15
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 1
Query:   79 WKKSMDSEFERLVAATTFSELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLLAVI 336
            W+K+M  E E L    T++ L E+PEG HV+DSKWV+K K+   G   R K+R++ KG++Q EGIDYH T A  A   + R L  I
Sbjct:  226 WRKAMQREIEALEQNETWT-LEELPEGKHVIDSKWVYKIKYKPNGDIERYKARLIAKGFTQVEGIDYHDTFAPVAKLVTVRCLLSI 310          
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Match: A0A8H5KHP2_GIBSU (Retrotransposon Ty1-copia subclass n=2 Tax=Fusarium fujikuroi species complex TaxID=171627 RepID=A0A8H5KHP2_GIBSU)

HSP 1 Score: 76.6 bits (187), Expect = 6.710e-14
Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   25 EPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFS--ELTEVPEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLARTASATSNRLL 327
            EPEPT++AAA     +  W++++ +E +      TF   +L+E+PE C  + S+WV K K +  G+  R K+R+V KGY+Q+EGIDY  T +    ATS R+L
Sbjct: 1490 EPEPTTYAAAMKCAESSHWERAIYAEKQSHDENGTFLIVDLSEIPEECVPLHSRWVFKKKLNQFGVIKRYKARLVIKGYAQREGIDYEETFSAVIKATSYRIL 1592          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1230.1459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV80_9PHAE1.070e-2244.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LDZ0_9PHAE1.100e-2244.55CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE1.100e-2244.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE1.100e-2244.55CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE1.120e-2244.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP36_9PHAE2.440e-2142.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001C9C900A4.790e-1638.10uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A6H5JH25_9PHAE5.510e-1544.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5N6M6A7_9ASTR9.830e-1546.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H5KHP2_GIBSU6.710e-1440.78Retrotransposon Ty1-copia subclass n=2 Tax=Fusariu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1230contigH-paniculata_contig1230:11241..11591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score83.2
Seed ortholog evalue8.9e-14
Seed eggNOG ortholog4558.Sb07g003556.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928952.6146314-CDS-H-paniculata_contig1230:11240..115911622928952.6146314-CDS-H-paniculata_contig1230:11240..11591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1230 11241..11591 -
1691480679.806508-CDS-H-paniculata_contig1230:11240..115911691480679.806508-CDS-H-paniculata_contig1230:11240..11591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1230 11241..11591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1230.1459.1prot_H-paniculata_contig1230.1459.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1230 11241..11591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1230.1459.1

>prot_H-paniculata_contig1230.1459.1 ID=prot_H-paniculata_contig1230.1459.1|Name=mRNA_H-paniculata_contig1230.1459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
STCTIAEAEPEPTSFAAACASKYADEWKKSMDSEFERLVAATTFSELTEV
PEGCHVVDSKWVHKSKWDSQGMFNRAKSRMVGKGYSQQEGIDYHATLART
ASATSNRLLAVIVCLLD
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mRNA from alignment at H-paniculata_contig1230:11241..11591-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1230.1459.1 ID=mRNA_H-paniculata_contig1230.1459.1|Name=mRNA_H-paniculata_contig1230.1459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig1230:11241..11591- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCACGTGTACCATCGCGGAAGCGGAGCCGGAGCCTACATCCTTTGCTGC TGCCTGCGCCTCAAAGTACGCGGACGAATGGAAGAAATCGATGGATTCAG AGTTTGAGAGACTTGTAGCAGCAACAACGTTTTCTGAACTAACAGAGGTA CCAGAGGGATGCCATGTTGTGGATTCGAAGTGGGTGCACAAGTCGAAGTG GGATTCACAGGGCATGTTTAATAGAGCAAAATCTAGAATGGTGGGGAAGG GATACAGCCAGCAAGAAGGTATCGACTACCATGCGACTCTCGCTCGTACG GCGTCGGCAACGTCTAACAGACTTTTGGCGGTGATCGTGTGCTTGCTTGA C
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Coding sequence (CDS) from alignment at H-paniculata_contig1230:11241..11591-

>mRNA_H-paniculata_contig1230.1459.1 ID=mRNA_H-paniculata_contig1230.1459.1|Name=mRNA_H-paniculata_contig1230.1459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig1230:11241..11591- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCACGTGTACCATCGCGGAAGCGGAGCCGGAGCCTACATCCTTTGCTGC
TGCCTGCGCCTCAAAGTACGCGGACGAATGGAAGAAATCGATGGATTCAG
AGTTTGAGAGACTTGTAGCAGCAACAACGTTTTCTGAACTAACAGAGGTA
CCAGAGGGATGCCATGTTGTGGATTCGAAGTGGGTGCACAAGTCGAAGTG
GGATTCACAGGGCATGTTTAATAGAGCAAAATCTAGAATGGTGGGGAAGG
GATACAGCCAGCAAGAAGGTATCGACTACCATGCGACTCTCGCTCGTACG
GCGTCGGCAACGTCTAACAGACTTTTGGCGGTGATCGTGTGCTTGCTTGA
CTCCACGTGTACCATCGCGGAAGCGGAGCCGGAGCCTACATCCTTTGCTG
CTGCCTGCGCCTCAAAGTACGCGGACGAATGGAAGAAATCGATGGATTCA
GAGTTTGAGAGACTTGTAGCAGCAACAACGTTTTCTGAACTAACAGAGGT
ACCAGAGGGATGCCATGTTGTGGATTCGAAGTGGGTGCACAAGTCGAAGT
GGGATTCACAGGGCATGTTTAATAGAGCAAAATCTAGAATGGTGGGGAAG
GGATACAGCCAGCAAGAAGGTATCGACTACCATGCGACTCTCGCTCGTAC
GGCGTCGGCAACGTCTAACAGACTTTTGGCGGTGATCGTGTGCTTGCTTG
AC
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