prot_H-paniculata_contig12020.1292.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig12020.1292.1
Unique Nameprot_H-paniculata_contig12020.1292.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length137
Homology
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BLAST of mRNA_H-paniculata_contig12020.1292.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.070e-21
Identity = 59/110 (53.64%), Postives = 72/110 (65.45%), Query Frame = 0 
Query:    2 HRKLEEVSYQALVRDFGGTVVCCLTAMIVFSLASSLGACSWKARGHIFSADFR-PELVDFRMALLALMLLRASAYLVGPLAAWLRALHDSVRDDRYLVGMRLQDHSDKSR 110
            H    EVS + ++ +F G VV  L AM++     SL A +W      + AD +  +L  FR AL AL L RASAYL+ P+ AWL ALHDSVRDDRYLVGMRLQDHSDKS+
Sbjct: 1178 HGSWAEVSPRGVLWNFAGAVVVRLLAMVLIPTVVSLVAGTWM---DAYGADGQFVQLGHFRAALFALTLTRASAYLIQPVRAWLTALHDSVRDDRYLVGMRLQDHSDKSQ 1284
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BLAST of mRNA_H-paniculata_contig12020.1292.1 vs. uniprot
Match: A0A835YNH4_9STRA (RING-CH-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.730e-8
Identity = 44/96 (45.83%), Postives = 56/96 (58.33%), Query Frame = 0 
Query:   44 ARGHIFSADFRPELVDFRMALLA-LMLLRASAY----LVGPLAAWLRALHDSVRDDRYLVGMRLQDH-SDKSRTERGQSVFGVALPPGPLVAVAGA 133
            ARG +       +L+ FR ALLA +M+L   A     L GP+  WLR+LHDSVRDDRYL G+RLQ+H +  +R  R  +V G A    P  A A A
Sbjct: 1473 ARGLVELPAHAFQLLVFRSALLAYVMILLGQALSGPALSGPVHRWLRSLHDSVRDDRYLRGLRLQNHPAAVARMHRHSAVNGDAHASNPAFAAAAA 1568
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12020.1292.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBR1_ECTSI2.070e-2153.64RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
A0A835YNH4_9STRA1.730e-845.83RING-CH-type domain-containing protein n=1 Tax=Tri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 85..136
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 62..84
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..34
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 35..61
NoneNo IPR availableTMHMMTMhelixcoord: 62..84
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12020contigH-paniculata_contig12020:2359..5076 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12020.1292.1mRNA_H-paniculata_contig12020.1292.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig12020 1897..5108 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig12020.1292.1 ID=prot_H-paniculata_contig12020.1292.1|Name=mRNA_H-paniculata_contig12020.1292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MHRKLEEVSYQALVRDFGGTVVCCLTAMIVFSLASSLGACSWKARGHIFS
ADFRPELVDFRMALLALMLLRASAYLVGPLAAWLRALHDSVRDDRYLVGM
RLQDHSDKSRTERGQSVFGVALPPGPLVAVAGAGGD*
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