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Homology
BLAST of mRNA_H-paniculata_contig12020.1292.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI) HSP 1 Score: 107 bits (268), Expect = 2.310e-22 Identity = 65/120 (54.17%), Postives = 78/120 (65.00%), Query Frame = 3
Query: 6 ALATVEKGLMHRKLEEVSYQALVRDFGGTVVCCLTAMIVFSLASSLGACSWKARGHIFSADFR-PELVDFRMALLALMLLRASAYLVGPLAAWLRALHDSVRDDRYLVGMRLQDHSDKSR 362
AL VE GL H EVS + ++ +F G VV L AM++ SL A +W + AD + +L FR AL AL L RASAYL+ P+ AWL ALHDSVRDDRYLVGMRLQDHSDKS+
Sbjct: 1168 ALLQVEAGLAHGSWAEVSPRGVLWNFAGAVVVRLLAMVLIPTVVSLVAGTWM---DAYGADGQFVQLGHFRAALFALTLTRASAYLIQPVRAWLTALHDSVRDDRYLVGMRLQDHSDKSQ 1284
BLAST of mRNA_H-paniculata_contig12020.1292.1 vs. uniprot
Match: A0A835YNH4_9STRA (RING-CH-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH4_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 4.180e-7 Identity = 44/96 (45.83%), Postives = 56/96 (58.33%), Query Frame = 3
Query: 162 ARGHIFSADFRPELVDFRMALLA-LMLLRASAY----LVGPLAAWLRALHDSVRDDRYLVGMRLQDH-SDKSRTERGQSVFGVALPPGPLVAVAGA 431
ARG + +L+ FR ALLA +M+L A L GP+ WLR+LHDSVRDDRYL G+RLQ+H + +R R +V G A P A A A
Sbjct: 1473 ARGLVELPAHAFQLLVFRSALLAYVMILLGQALSGPALSGPVHRWLRSLHDSVRDDRYLRGLRLQNHPAAVARMHRHSAVNGDAHASNPAFAAAAA 1568
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 99.8 |
| Seed ortholog evalue | 1.1e-18 |
| Seed eggNOG ortholog | 2880.D8LBR1 |
| KEGG ko | ko:K10661 |
| KEGG Pathway | ko04141,map04141 |
| Hectar predicted targeting category | signal anchor |
| GOs | GO:0000176,GO:0000177,GO:0000178,GO:0000209,GO:0000291,GO:0000956,GO:0001101,GO:0002020,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004536,GO:0004540,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006720,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009414,GO:0009415,GO:0009628,GO:0009698,GO:0009699,GO:0009892,GO:0009893,GO:0009987,GO:0010025,GO:0010033,GO:0010035,GO:0010143,GO:0010166,GO:0010243,GO:0010345,GO:0010467,GO:0010468,GO:0010498,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016021,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016180,GO:0016567,GO:0016740,GO:0016787,GO:0016788,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0019748,GO:0019787,GO:0019899,GO:0019941,GO:0022613,GO:0030163,GO:0030176,GO:0030433,GO:0031123,GO:0031125,GO:0031126,GO:0031224,GO:0031227,GO:0031624,GO:0031974,GO:0031981,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0036211,GO:0036503,GO:0042175,GO:0042221,GO:0042254,GO:0042335,GO:0042802,GO:0043085,GO:0043144,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043628,GO:0043632,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044390,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048856,GO:0050789,GO:0050790,GO:0050896,GO:0051341,GO:0051353,GO:0051603,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0071025,GO:0071027,GO:0071028,GO:0071051,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098827,GO:0140096,GO:0140097,GO:0140098,GO:1900490,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1901698,GO:1901700,GO:1902494,GO:1905354,GO:1990381,GO:2001215 |
| EggNOG free text desc. | chlorophyll binding |
| EggNOG OGs | COG5183@1,KOG1609@2759 |
| EC | 2.3.2.27 |
| COG Functional cat. | A |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko04121 |
| Exons | 4 |
| Model size | 905 |
| Cds size | 411 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12020.1292.1 >prot_H-paniculata_contig12020.1292.1 ID=prot_H-paniculata_contig12020.1292.1|Name=mRNA_H-paniculata_contig12020.1292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MHRKLEEVSYQALVRDFGGTVVCCLTAMIVFSLASSLGACSWKARGHIFS
ADFRPELVDFRMALLALMLLRASAYLVGPLAAWLRALHDSVRDDRYLVGM
RLQDHSDKSRTERGQSVFGVALPPGPLVAVAGAGGD* back to topmRNA from alignment at H-paniculata_contig12020:1897..5108- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig12020.1292.1 ID=mRNA_H-paniculata_contig12020.1292.1|Name=mRNA_H-paniculata_contig12020.1292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3212bp|location=Sequence derived from alignment at H-paniculata_contig12020:1897..5108- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGAGCACTTGCTACCGTGGAAAAGGGGTTGATGCATCGGAAACTGGAA
GAGGTGAGGATTGGGGAGCGCAGTCTGGGATATGTATGGTATATGAGGGG
ACGAGCAGTGACGAAGGTAACTTATCACGTGCTCACTGTGGAACCATATT
AGAGCAGATTGATTGTTACTATCCTCGTTGATGGAATTGGTGATACCACA
GACTTTGTTTGCTAAACACTGGTGTACAACACTCGACACAGCTCATGCTA
ATGAAGGAATGTAACTGTTTCATAACACACACACATACATACACAACATG
CTGAAATTGCACACCAGTACCAGGTGAAGTTACGTGGTGGTCATTGGCAA
ATTCCAAACAAGATGAATAGCGTACTCTATTCACTGCTAATTTTTACACC
ACTCCCCGTAAAACACTTGTTGTGCTGTACCGCTCGTTGTAGAGGAGGGC
GTGCACTGAAAGCGCGCTGGAGTGCTCAATACTTCATTTCCATTTAGCAC
CCGTCAGCCAAAAACATGATACATGCAGCAACTTATACTCGCGCTGCAGT
TTATGCACCCTGTGCTCACAGCTACCGCCTACTTTAGGTTCAAGCAGCTC
ATCAGTAAATTGAAGGAGCATGACGTTATGAACGGAATGCTGAATGAGGA
ACTGGCGGGTACAATAATTCAGAGCTTGAATTGATTGAGGCAGAGTTTAT
CTTGTTTTGAGAGTGCGGCTAATTACAAATGCACTAAAATATGGCGTTGC
GACATTTAGTAGATAATAACATCTGCCTTAAATGTGGGAACCACTGTTCT
CTTGATTTGTTTTATTTTGCAATGCAACCGACCGACCCAAACGTTTTGTC
ACATATGCGCACGCAAACACACACACACACACACACACACACAGGTGTCG
TACCAAGCTCTGGTACGAGATTTCGGGGGCACGGTTGTGTGCTGCCTGAC
AGCGATGATCGTGTTCTCCTTGGCGAGCTCACTGGGTGCGTGCTCGTGGA
AAGCGCGAGGCCATATATTTTCGGCGGACTTCCGGCCAGAGGTACGATAG
AAGTACTGTTAAGTATGTTGAATTTCCTGTTGGTAGTTGAATATAGCTGA
GTCGCAAAGTAGTCGCGCTAGAAGGGTTAATTTGCGCTGTTCATTTCAAC
GAAGGGATTACGACTCCAAAATCTGATGAGTGGCAAACCAGATAATGTGC
CACTTACGGATTAACCCACCTCTTGCTTTTGCCCCTCCCCTCTGCCTCCG
CTCTGCCCCATCGTTCTGGCATGGACCCTGGTGATGATCCTATTGTTTGG
TTTACTGTCGATCCGATGTCGATCTGCTGTTAATGTATTCGCATTAGCTG
GTGGACTTTCGAATGGCCCTTTTGGCTTTGATGCTCTTGCGAGCGTCGGC
CTATCTGGTGGGTCCATTGGCGGCATGGTTAAGGGCTCTGCACGACAGCG
TGCGGGACGACCGCTACCTGGTGGGAATGAGGTTGCAGGACCATTCCGAC
AAGGTGCCACCCGCAAAAAGTTGACAGAATTGCAGTAGGAGATGTTCCCA
ATCTGTTGGCATATGTGCTGATGCGTTTTTTTTCTTTTGTGCTTCAATAC
TGAAAGAGTAACATTGTCGCTTGATCAACCAATCTAAGCGTTTCATCACT
GGGTGAAAGCTCCCCCCCCCCCCGACACACACACACACACACTTGTTCTC
TTGGTTGTTGCTCTCCTACGTGTAAATTTAGTGTAGTTCGTTTTCGGTTT
TGTGCACATCTATAAATCACGTGTATAGTTTAGAGTATAGTTTTTGGTTA
TTTTTTCTGGATCCGCCGTTGTGCAAAAAAAGGAACCACCTACCCACACA
GACGCCCCACGACTTGGAAATTGAGTCAAACATGTGCTCCAGCAGCTTGA
AGATGCTGGACGTACCTCCATCTTGTTTCATGGTCATAGTCCATGTTTTT
TACAGTAAATGAAGTTATATTCTGGTGCATTGGACTCGCTTTTTTACTCT
TTCAGTTTTCTCTCTTTTTTTTTTCACACCTGATCATAACGCCGGCCCGA
ACGCCAGCTAGCAACTCTATACCTTGAACTTATTGCTTTTGTTCCCCAAG
TCACTTCTTACCGTCTCTCCTATTGCATATTGAAAAATTCGTTTATCCTT
AGCTAAGCTTTTTACCCTCATGTATATATATATATAAATTTAAGGTCGTT
ACCTTACCTCTCCAGCAATTCCATAATCGGCTTATCCACCCTATCAATGG
ATTGAGTCTGCCCTTCATTCGAGAGCGTAAATACCATCGCTGTCTCAATT
GATTGACTGTCTTTCAACAAATATTTGAAGTCTTGGTCTGCAGTAATAAT
AGTGTGGGCTTACCGACCCTATGGACATTATCAACAACGTATAGGGTAGT
GTAGTTCACATAGTGTATCGTTGTACAGATGGGGCACTACTTGTATGTAG
ATCTTAGCTCATGCACGAATTCTATTTTTTCGAGGAATGAATATTCTCGT
TAGAAAAAAATAAATATATCATGGAGTCTGACGGCCACGTATCTATTTGC
TTAGCTGCTTTGCATCGACGACAAAAAAAAAATTGATGCTGCTTCCCGCG
TTCCCATCTACCCCTCGTTATTGATTTATTTTGGGTGATAATTCTCCCGC
CTTACCCACACAGTCCAGGACCGAGCGTGGTCAAAGCGTTTTTGGCGTGG
CACTACCGCCCGGCCCACTGGTGGCGGTCGCAGGCGCAGGCGGTGACTGA
AAGACGGGGGACTCAGAAAAACGAACAACAAAAAAACTGAGCAGCGCATA
CAACAGGTATACGCTTGGCGCCGCGGTGATGCAAGAGAGCGCGGTGAGAC
CTGTTTTCTGCAGGGGCGTACTGCTACCCTGCGCACAATAAATGGAACAC
AATATAGAAGGAACTACGCTCGGCTGGAGAATGGCCAGTCGTTTGGTCGA
TTGGAATCGGAGGCGGCGACGGAGAGAGGAGACGGACGAGAGTAGTGGGC
GGATTTTTGCGGGGAGGGAGGTGTTCGCAGGGGCCCCGGAATGGTTGTGG
GTGTGAAGTTGGATGGGAGTCTGTGACGTTGCGCGCGTTTCGTGCGGTTT
TGTTTTTGAATGACGGTACGGAAAACTGGCGGTGGTGGCAAATGACTACT
CGCAACAGGGAGGAATGTTCTCAATTTTGGGGTGGGCGGAATAGGGGAAG
GGATTGAGAAGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig12020:1897..5108- >mRNA_H-paniculata_contig12020.1292.1 ID=mRNA_H-paniculata_contig12020.1292.1|Name=mRNA_H-paniculata_contig12020.1292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig12020:1897..5108- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCGGAAACTGGAAGAGATGCATCGGAAACTGGAAGAGGTGTCGTA
CCAAGCTCTGGTACGAGATTTCGGGGGCACGGTTGTGTGCTGCCTGACAG
CGATGATCGTGTTCTCCTTGGCGAGCTCACTGGGTGCGTGCTCGTGGAAA
GCGCGAGGCCATATATTTTCGGCGGACTTCCGGCCAGAGGTGTCGTACCA
AGCTCTGGTACGAGATTTCGGGGGCACGGTTGTGTGCTGCCTGACAGCGA
TGATCGTGTTCTCCTTGGCGAGCTCACTGGGTGCGTGCTCGTGGAAAGCG
CGAGGCCATATATTTTCGGCGGACTTCCGGCCAGAGCTGGTGGACTTTCG
AATGGCCCTTTTGGCTTTGATGCTCTTGCGAGCGTCGGCCTATCTGGTGG
GTCCATTGGCGGCATGGTTAAGGGCTCTGCACGACAGCGTGCGGGACGAC
CGCTACCTGGTGGGAATGAGGTTGCAGGACCATTCCGACAAGCTGGTGGA
CTTTCGAATGGCCCTTTTGGCTTTGATGCTCTTGCGAGCGTCGGCCTATC
TGGTGGGTCCATTGGCGGCATGGTTAAGGGCTCTGCACGACAGCGTGCGG
GACGACCGCTACCTGGTGGGAATGAGGTTGCAGGACCATTCCGACAAGTC
CAGGACCGAGCGTGGTCAAAGCGTTTTTGGCGTGGCACTACCGCCCGGCC
CACTGGTGGCGGTCGCAGGCGCAGGCGGTGACTGATCCAGGACCGAGCGT
GGTCAAAGCGTTTTTGGCGTGGCACTACCGCCCGGCCCACTGGTGGCGGT
CGCAGGCGCAGGCGGTGACTGA back to top
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