prot_H-paniculata_contig11693.1082.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig11693.1082.1
Unique Nameprot_H-paniculata_contig11693.1082.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length78
Homology
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 7.480e-43
Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 0
Query:    1 MKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 77
            MKNVEGSFPGD T+GG NPFA  WDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN
Sbjct:  131 MKNVEGSFPGDMTIGG-NPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206          
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: D8LJH9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH9_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 8.620e-43
Identity = 70/77 (90.91%), Postives = 71/77 (92.21%), Query Frame = 0
Query:    1 MKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 77
            MKNVEGSFPGD T+GG NPF   WD MSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN
Sbjct:   31 MKNVEGSFPGDMTIGG-NPFGAQWDKMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 106          
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: D7FWY5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY5_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 2.470e-39
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 0
Query:    1 MKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 77
            MKNVEGSFPGDFTLGG NPF  SWDAMSEET+ SKRAIELNNGRAAQMGILA+M+HEE++N+PY+INDLL A YTFN
Sbjct:   62 MKNVEGSFPGDFTLGG-NPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 137          
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 134 bits (338), Expect = 1.880e-38
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 0
Query:    1 MKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 77
            MKNVEGSFPGDFTLGG NPFA SWDAMSEET+ SKRAIELNNGRAAQMGILA+M+HEE++N+PY+INDLL A Y FN
Sbjct:  107 MKNVEGSFPGDFTLGG-NPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182          
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 5.210e-38
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0
Query:    1 MKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 77
            MKNVEGSFPGDFTLGG NPF  SWDAMSEET+ SKRAIELNNGRAAQMGILA+M+HEE++N+PY+INDLL A Y FN
Sbjct:  106 MKNVEGSFPGDFTLGG-NPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181          
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 134 bits (337), Expect = 7.100e-38
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 0
Query:    1 MKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 77
            MKNVEGSFPGDFTLGG NPF  SWDAMSEET+ SKRAIELNNGRAAQMGILA+M+HEE++N+PY+INDL+ A YTFN
Sbjct:  142 MKNVEGSFPGDFTLGG-NPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217          
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 7.300e-38
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 0
Query:    1 MKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 77
            MKNVEGSFPGDFT GG NPFA SWDAMSEET+ SKRAIELNNGRAAQMGILA+M+HEE++N+PYIINDLL A YTFN
Sbjct:  143 MKNVEGSFPGDFTNGG-NPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218          
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 7.910e-38
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 0
Query:    1 MKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 77
            MKNVEGSFPGDFT GG NPFA SWDAMSEET+ SKRAIELNNGRAAQMGILA+M+HEE++N+PY+INDLL A YTFN
Sbjct:  146 MKNVEGSFPGDFTNGG-NPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221          
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 133 bits (334), Expect = 1.960e-37
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0
Query:    1 MKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 77
            MKNVEGSFPGDFTLGG NPFA SWDAMS ET+ SKRAIELNNGRAAQMGILA+M+HEE++N+PY+INDLL A Y FN
Sbjct:  141 MKNVEGSFPGDFTLGG-NPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216          
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 132 bits (331), Expect = 4.870e-37
Identity = 63/77 (81.82%), Postives = 68/77 (88.31%), Query Frame = 0
Query:    1 MKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 77
            MKNVEGSFPGDF +GG NPFA SWD+MS ET+ SKRAIELNNGRAAQMGIL MM+HEE+SNQPYI NDLL A YTFN
Sbjct:  136 MKNVEGSFPGDFIIGG-NPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBS3_9PHAE7.480e-4393.51LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LJH9_ECTSI8.620e-4390.91Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7FWY5_ECTSI2.470e-3983.12Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
FCPD_MACPY1.880e-3883.12Fucoxanthin-chlorophyll a-c binding protein D, chl... [more]
A0A6H5JDS8_9PHAE5.210e-3881.82LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
FCPB_MACPY7.100e-3881.82Fucoxanthin-chlorophyll a-c binding protein B, chl... [more]
A0A6H5KCX6_9PHAE7.300e-3884.42LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A6H5JHT6_9PHAE7.910e-3883.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
FCPC_MACPY1.960e-3781.82Fucoxanthin-chlorophyll a-c binding protein C, chl... [more]
FCPF_MACPY4.870e-3781.82Fucoxanthin-chlorophyll a-c binding protein F, chl... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 5..57
e-value: 1.8E-8
score: 35.1
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 7..61
NoneNo IPR availablePANTHERPTHR21649:SF63coord: 7..61
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 4..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11693contigH-paniculata_contig11693:6171..6404 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11693.1082.1mRNA_H-paniculata_contig11693.1082.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig11693 6115..6867 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig11693.1082.1 ID=prot_H-paniculata_contig11693.1082.1|Name=mRNA_H-paniculata_contig11693.1082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGI
LAMMIHEEISNQPYIINDLLNAPYTFN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln