mRNA_H-paniculata_contig11693.1082.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11693.1082.1
Unique NamemRNA_H-paniculata_contig11693.1082.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: D8LJH9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH9_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 8.730e-53
Identity = 87/95 (91.58%), Postives = 88/95 (92.63%), Query Frame = 3 
Query:    3 PLGLAQIVGFIGFLELNVMKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 287
            PLGLAQIV FIGFLELNVMKNVEGSFPGD T+GG NPF   WD MSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN
Sbjct:   13 PLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGG-NPFGAQWDKMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 106
[Close]
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 8.960e-53
Identity = 89/95 (93.68%), Postives = 90/95 (94.74%), Query Frame = 3 
Query:    3 PLGLAQIVGFIGFLELNVMKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 287
            PLGLAQIV FIGFLELNVMKNVEGSFPGD T+GG NPFA  WDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN
Sbjct:  113 PLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGG-NPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206
[Close]
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 161 bits (407), Expect = 3.690e-46
Identity = 79/95 (83.16%), Postives = 86/95 (90.53%), Query Frame = 3 
Query:    3 PLGLAQIVGFIGFLELNVMKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 287
            P GLAQI GFIGFLEL VMKNVEGSFPGDFTLGG NPFA SWDAMSEET+ SKRAIELNNGRAAQMGILA+M+HEE++N+PY+INDLL A Y FN
Sbjct:   89 PGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGG-NPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182
[Close]
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.860e-45
Identity = 77/95 (81.05%), Postives = 84/95 (88.42%), Query Frame = 3 
Query:    3 PLGLAQIVGFIGFLELNVMKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 287
            P GLAQI  FIGFLEL VMKNVEGSFPGDFTLGG NPF  SWDAMSEET+ SKRAIELNNGRAAQMGILA+M+HEE++N+PY+INDLL A Y FN
Sbjct:   88 PAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGG-NPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181
[Close]
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 159 bits (403), Expect = 4.080e-45
Identity = 78/95 (82.11%), Postives = 85/95 (89.47%), Query Frame = 3 
Query:    3 PLGLAQIVGFIGFLELNVMKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 287
            P GLAQI GFIGFLEL VMKNVEGSFPGDFTLGG NPFA SWDAMS ET+ SKRAIELNNGRAAQMGILA+M+HEE++N+PY+INDLL A Y FN
Sbjct:  123 PGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGG-NPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216
[Close]
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 159 bits (403), Expect = 4.210e-45
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 3 
Query:    3 PLGLAQIVGFIGFLELNVMKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 287
            P GLAQI  FIGFLEL VMKNVEGSFPGDFTLGG NPF  SWDAMSEET+ SKRAIELNNGRAAQMGILA+M+HEE++N+PY+INDL+ A YTFN
Sbjct:  124 PAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGG-NPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217
[Close]
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 6.120e-45
Identity = 78/95 (82.11%), Postives = 85/95 (89.47%), Query Frame = 3 
Query:    3 PLGLAQIVGFIGFLELNVMKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 287
            P GLAQI  F+GFLEL VMKNVEGSFPGDFT GG NPFA SWDAMSEET+ SKRAIELNNGRAAQMGILA+M+HEE++N+PYIINDLL A YTFN
Sbjct:  125 PAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGG-NPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218
[Close]
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 6.680e-45
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 3 
Query:    3 PLGLAQIVGFIGFLELNVMKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 287
            P GLAQI  F+GFLEL VMKNVEGSFPGDFT GG NPFA SWDAMSEET+ SKRAIELNNGRAAQMGILA+M+HEE++N+PY+INDLL A YTFN
Sbjct:  128 PAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGG-NPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221
[Close]
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 158 bits (400), Expect = 9.950e-45
Identity = 78/95 (82.11%), Postives = 83/95 (87.37%), Query Frame = 3 
Query:    3 PLGLAQIVGFIGFLELNVMKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 287
            P GLAQI GFIGFLEL VMKNVEGSFPGDF +GG NPFA SWD+MS ET+ SKRAIELNNGRAAQMGIL MM+HEE+SNQPYI NDLL A YTFN
Sbjct:  118 PGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGG-NPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211
[Close]
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 9.450e-44
Identity = 78/95 (82.11%), Postives = 85/95 (89.47%), Query Frame = 3 
Query:    3 PLGLAQIVGFIGFLELNVMKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 287
            P GLAQI  FIGFLEL VMKNVEGSFPGDFTLGG NPF  SWDAMSEET+ SKRAIELNNGRAAQMGILA+M+HEE++N+PY+INDLL A YTFN
Sbjct:  284 PAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGG-NPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11693.1082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJH9_ECTSI8.730e-5391.58Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5KBS3_9PHAE8.960e-5393.68LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
FCPD_MACPY3.690e-4683.16Fucoxanthin-chlorophyll a-c binding protein D, chl... [more]
A0A6H5JDS8_9PHAE2.860e-4581.05LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
FCPC_MACPY4.080e-4582.11Fucoxanthin-chlorophyll a-c binding protein C, chl... [more]
FCPB_MACPY4.210e-4581.05Fucoxanthin-chlorophyll a-c binding protein B, chl... [more]
A0A6H5KCX6_9PHAE6.120e-4582.11LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A6H5JHT6_9PHAE6.680e-4581.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
FCPF_MACPY9.950e-4582.11Fucoxanthin-chlorophyll a-c binding protein F, chl... [more]
D8LNK6_ECTSI9.450e-4482.11Light harvesting complex protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11693contigH-paniculata_contig11693:6115..6867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue5.4e-31
Seed eggNOG ortholog2880.D7G1R7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2CDPH@1,2S3EU@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-07_001470.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size753
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11693.1082.1prot_H-paniculata_contig11693.1082.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11693 6171..6404 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928877.3637302-UTR-H-paniculata_contig11693:6114..61701622928877.3637302-UTR-H-paniculata_contig11693:6114..6170Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11693 6115..6170 +
1691480653.7974336-UTR-H-paniculata_contig11693:6114..61701691480653.7974336-UTR-H-paniculata_contig11693:6114..6170Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11693 6115..6170 +
1622928877.3903363-UTR-H-paniculata_contig11693:6404..68671622928877.3903363-UTR-H-paniculata_contig11693:6404..6867Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11693 6405..6867 +
1691480653.8227243-UTR-H-paniculata_contig11693:6404..68671691480653.8227243-UTR-H-paniculata_contig11693:6404..6867Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11693 6405..6867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928877.3777728-CDS-H-paniculata_contig11693:6170..64041622928877.3777728-CDS-H-paniculata_contig11693:6170..6404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11693 6171..6404 +
1691480653.813142-CDS-H-paniculata_contig11693:6170..64041691480653.813142-CDS-H-paniculata_contig11693:6170..6404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11693 6171..6404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11693.1082.1

>prot_H-paniculata_contig11693.1082.1 ID=prot_H-paniculata_contig11693.1082.1|Name=mRNA_H-paniculata_contig11693.1082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MKNVEGSFPGDFTLGGVNPFAKSWDAMSEETKLSKRAIELNNGRAAQMGI
LAMMIHEEISNQPYIINDLLNAPYTFN*
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mRNA from alignment at H-paniculata_contig11693:6115..6867+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11693.1082.1 ID=mRNA_H-paniculata_contig11693.1082.1|Name=mRNA_H-paniculata_contig11693.1082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=753bp|location=Sequence derived from alignment at H-paniculata_contig11693:6115..6867+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCGCTGGGCCTTGCCCAGATCGTGGGCTTCATTGGCTTCCTCGAGCTG
AACGTGATGAAAAACGTCGAGGGGTCGTTCCCCGGAGATTTCACTCTGGG
CGGCGTCAACCCGTTCGCGAAATCGTGGGATGCCATGTCGGAGGAGACGA
AGCTGTCGAAGCGCGCGATTGAGTTGAACAACGGGCGCGCGGCGCAAATG
GGTATCCTGGCCATGATGATTCACGAAGAAATCTCCAACCAACCCTACAT
CATCAATGACCTGTTGAACGCGCCATACACGTTCAACTAAGGAACACGCT
CAGTTTTTTTTTGTCCGCACGGGAAATGGATCCAAGAGTGAAGGATCAAG
TTTTGCCGGCTGCTTCATGGATCATGAGATGCCTGCCGAGTTGGCGAGCA
CTTCACGTAACGGGCAAGGAGTAGTTTGAACGGGAGGTGGTTATGACTGT
CGCAGTGCCTTATGGGAGAAGTGCACGAAATTTTGGGAGAACCTGAACGC
ATTAGAGTCATGAGTCACGATGTTGCGTGTCTGTAGCGGGGCGGAGACCT
TCAGTATAATAACAAAAAAATTTACCGTCTTGGTTGGCTCGTCGTTATTT
ACCTGTTTTACCGCGAAGATGCGGGGTGGGTATCCATTGGCGGTAAGTGT
CGCCCGAACGGATTTCCATCCCTGAGACGTACTGGTCTATGACGTACGGT
CTGAAGCGGAATTAGCCATTCCGAGATTGCCTGGTGTGGATGGGAGCTTT
TTT
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Coding sequence (CDS) from alignment at H-paniculata_contig11693:6115..6867+

>mRNA_H-paniculata_contig11693.1082.1 ID=mRNA_H-paniculata_contig11693.1082.1|Name=mRNA_H-paniculata_contig11693.1082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig11693:6115..6867+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAACGTCGAGGGGTCGTTCCCCGGAGATTTCACTCTGGGCGGCGT
CAACCCGTTCGCGAAATCGTGGGATGCCATGTCGGAGGAGACGAAGCTGT
CGAAGCGCGCGATTGAGTTGAACAACGGGCGCGCGGCGCAAATGGGTATC
CTGGCCATGATGATTCACGAAGAAATCTCCAACCAACCCTACATCATCAA
TGACCTGTTGAACGCGCCATACACGTTCAACTAAATGAAAAACGTCGAGG
GGTCGTTCCCCGGAGATTTCACTCTGGGCGGCGTCAACCCGTTCGCGAAA
TCGTGGGATGCCATGTCGGAGGAGACGAAGCTGTCGAAGCGCGCGATTGA
GTTGAACAACGGGCGCGCGGCGCAAATGGGTATCCTGGCCATGATGATTC
ACGAAGAAATCTCCAACCAACCCTACATCATCAATGACCTGTTGAACGCG
CCATACACGTTCAACTAA
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