prot_H-paniculata_contig1152.982.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1152.982.1
Unique Nameprot_H-paniculata_contig1152.982.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1057
Homology
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BLAST of mRNA_H-paniculata_contig1152.982.1 vs. uniprot
Match: A0A6H5KKU8_9PHAE (TFIIS N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKU8_9PHAE)

HSP 1 Score: 388 bits (997), Expect = 9.960e-115
Identity = 478/873 (54.75%), Postives = 550/873 (63.00%), Query Frame = 0 
Query:  204 VEGNESDEWSEEDNVHYLPSEIKAQFGNVVWAKSPRSAPWPGIVWDPRFLAGDKISREVARIAYASLGKSHLIKFYDKGR-SFAPIPYKNLTPFDPADLPTHLKLCNTSKKKELLKEDVQTALEAAQLPRSERLADMHQVGRFSAVKKPKKTPAK--KPPKSKSAAASPAEDRTAKRGRGRPRKHT--VKALEEDAPSAPSSGA-EYELEVPVAEENKEEDQEDPMVDEDSGEGMGRGGRSGXXXXXXXXXXXXXXXXXXXXXXXXXXYVAEGDPDAXXXEDKFLDESFAKTKGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKQTGKTMVPGEAKARAIASVKAYIATLPPLEIGRDEGLVAMKEEA------RGGXXXXXXXXXXXXXAEGQGREKKP---------KAVKSSXXXXXXXXXXXKQRLSEMKSSSEPVWKQARARMQEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAIEGRVQTGRKLTQRLGKASAESRFNKEEVLEVLRGLGELEPSVELLQQSGCGKAVAAVRKYYSGGSQVKHNDKDIASAASTLRARWMEALGKATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGDVKAEGSATSKTGNGRDSPRLPRSSSVGGXXXXXXXXXXRKSREDVGGRYGGGRGXXXPGAGXSGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTGGIDAGIAVKEEKEKPSVVVLEEPRRRALGMLTAVLGSATAAVERCTSIEEELYSSQGKDIGKEYLRRLRTAVFSMEGSAAQRLRDKVMSEMVLPRDFATKNADELRSLAGM 1055
             +GNESDEWS+ D VHYLP E+KAQFG VVWAK   + PWP +VWDPRFL  DK++R VAR+AYA++GKSHL+KFY   + SFA +PYK + PFD  +LPTHLK CN +KKK+ LKEDVQTA+EA+ L +SERLA++H VGR++  KK   TP K      S++  A+ AE    KRGRGRPRK    VK L+ D PS  SSG  EYEL VP AEE  E                       XXXXXXXXXXXXXXXXXXXXXXXXXXY  EG    XXX DK  D+ F  TK         XXXXXXXXXXXXXXXXXXXXXXXXX                                     ++ G +M PG AKARA+A V+ ++A LPP E GRDEG +  KEEA      R G  XXXXXXXXXXX     +  +                XXXXXXXXXXX    ++MKSSSEP+WKQ R RM   XXXXXXXXXXXXXXXXXXXXXXXXX          G  E  +Q GRKLTQRL KA  E +FNKEEVLE+L+ LGELEPS ELLQQSGCGKAVA+ RKY+SGG QVKHNDK++A+AAS+LR RWM AL    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              + G      R P+    GG     XXXXX                XXX    X    XXXXXXXXXXXXXX         XXXXXX               +  + V  +EPRRRA+GML +VLG+  AA+ERCT IEEEL+ SQG +I KEYLRRLRTAVFSMEGS +Q+LRDKVMS  V+  DF +K+ +ELR++AG+
Sbjct:  169 ADGNESDEWSDHDEVHYLPREVKAQFGQVVWAKMG-NPPWPALVWDPRFLGNDKVARGVARMAYAAVGKSHLVKFYTAAKNSFACVPYKRIKPFDATELPTHLKACNGAKKKDTLKEDVQTAVEASLLTKSERLAEIHMVGRWTGNKKNSSTPKKANNTATSRTPTAASAEP-PKKRGRGRPRKTPLPVKELDADPPSPVSSGGVEYELPVPEAEEGAEXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTVEGXXXXXXXXDKLSDKDFVATKAGRGRKKNGXXXXXXXXXXXXXXXXXXXXXXXXXTSDGGGSDTLFGGEAPGNSSGK--------------KRRQGGSMEPGRAKARALAFVREFVAGLPPTEYGRDEGWIPSKEEAAREASARAGESXXXXXXXXXXXXXXXNKRDRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQMKSSSEPIWKQHR-RMXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPPGAGAG-GNRESEIQMGRKLTQRLAKAGVEGKFNKEEVLEILQKLGELEPSRELLQQSGCGKAVASARKYFSGG-QVKHNDKEVATAASSLRTRWMNALAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------RVGEETPRSRSPKPE-TGGVAREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKETTKEVXXXXXXXXXXXXXXXXXXXSAKMSTAVAKDEPRRRAMGMLMSVLGTTAAALERCTEIEEELHQSQGGEISKEYLRRLRTAVFSMEGSDSQKLRDKVMSGYVVSSDFVSKSCEELRAMAGL 1007
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1152.982.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKU8_9PHAE9.960e-11554.75TFIIS N-terminal domain-containing protein n=2 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017956AT hook, DNA-binding motifPRINTSPR00929ATHOOKcoord: 376..386
score: 70.83
coord: 499..510
score: 51.04
coord: 621..631
score: 33.71
IPR017956AT hook, DNA-binding motifSMARTSM00384AT_hook_2coord: 376..388
e-value: 0.44
score: 17.3
coord: 130..142
e-value: 2.5
score: 13.0
coord: 501..513
e-value: 5.7
score: 11.0
IPR003617Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-typeSMARTSM00509TFS2_5coord: 723..803
e-value: 0.0038
score: 26.5
NoneNo IPR availableGENE3D2.30.30.140coord: 223..333
e-value: 4.0E-11
score: 45.0
NoneNo IPR availableSUPERFAMILY63748Tudor/PWWP/MBTcoord: 225..353
IPR035441TFIIS/LEDGF domain superfamilyGENE3D1.20.930.10coord: 714..813
e-value: 6.7E-11
score: 43.7
IPR035441TFIIS/LEDGF domain superfamilySUPERFAMILY47676Conserved domain common to transcription factors TFIIS, elongin A, CRSP70coord: 733..808
IPR000313PWWP domainPFAMPF00855PWWPcoord: 228..328
e-value: 1.1E-10
score: 41.7
IPR017923Transcription factor IIS, N-terminalPFAMPF08711Med26coord: 744..800
e-value: 2.4E-5
score: 24.2
IPR017923Transcription factor IIS, N-terminalPROSITEPS51319TFIIS_Ncoord: 721..804
score: 12.29
IPR036575Transcription elongation factor S-II, central domain superfamilyGENE3D1.10.472.30coord: 958..1053
e-value: 2.5E-5
score: 26.5
IPR036575Transcription elongation factor S-II, central domain superfamilySUPERFAMILY46942Elongation factor TFIIS domain 2coord: 964..1051
IPR000637HMG-I/HMG-Y, DNA-binding, conserved sitePROSITEPS00354HMGI_Ycoord: 374..384

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1152contigH-paniculata_contig1152:7345..23979 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1152.982.1mRNA_H-paniculata_contig1152.982.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1152 7245..24033 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1152.982.1 ID=prot_H-paniculata_contig1152.982.1|Name=mRNA_H-paniculata_contig1152.982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1057bp
MARERGSNPTRRGPSRSGRASFEQDGSSNAGTENDSDEQPHTSEQQRSGM
VDSAAGKTNTNPRATYSTENGALMDETAAVGDDHGADDTRNYKSTTSNTN
DNDSDSHYASPAVAPPPPTETLPEVASPAPRGRGRPRKKGNTVSTAGAAS
AVTTAPLPTTPKASEALPMTQRGSGSSSVAAASGSSAVNGQGSQWGGGSG
DGEVEGNESDEWSEEDNVHYLPSEIKAQFGNVVWAKSPRSAPWPGIVWDP
RFLAGDKISREVARIAYASLGKSHLIKFYDKGRSFAPIPYKNLTPFDPAD
LPTHLKLCNTSKKKELLKEDVQTALEAAQLPRSERLADMHQVGRFSAVKK
PKKTPAKKPPKSKSAAASPAEDRTAKRGRGRPRKHTVKALEEDAPSAPSS
GAEYELEVPVAEENKEEDQEDPMVDEDSGEGMGRGGRSGGGEEDSDDESE
DGGGGDGGDDDDEEEYVAEGDPDADEEEDKFLDESFAKTKGSSSSSSSSS
SRKRGRPRGSRAAKNSSNTAEGAATGGKGEEKKTSGNKRSRQSSSSLAAL
GEDSDGGGGGSKQTGKTMVPGEAKARAIASVKAYIATLPPLEIGRDEGLV
AMKEEARGGGGGGGKRSREKDRAEGQGREKKPKAVKSSREEKQREEDDRK
QRLSEMKSSSEPVWKQARARMQEEQQPTAAAAGAKDSKSKSAESAAATSG
VGGGAGGGTGAIEGRVQTGRKLTQRLGKASAESRFNKEEVLEVLRGLGEL
EPSVELLQQSGCGKAVAAVRKYYSGGSQVKHNDKDIASAASTLRARWMEA
LGKATTTTTTAVAAAAAAATTTSSSSSQTATTTATSSSAATATTGDVKAE
GSATSKTGNGRDSPRLPRSSSVGGGGSVRGGGRERKSREDVGGRYGGGRG
EEEPGAGGSGSRGGRAGSGSGPEDGGAVGGPGGVGGGGKKKDTGGIDAGI
AVKEEKEKPSVVVLEEPRRRALGMLTAVLGSATAAVERCTSIEEELYSSQ
GKDIGKEYLRRLRTAVFSMEGSAAQRLRDKVMSEMVLPRDFATKNADELR
SLAGMV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017956AT_hook_DNA-bd_motif
IPR003617TFIIS/CRSP70_N_sub
IPR035441TFIIS/LEDGF_dom_sf
IPR000313PWWP_dom
IPR017923TFIIS_N
IPR036575TFIIS_cen_dom_sf
IPR000637HMGI/Y_DNA-bd_CS