mRNA_H-paniculata_contig1152.982.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1152.982.1 vs. uniprot
Match: A0A6H5KKU8_9PHAE (TFIIS N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKU8_9PHAE) HSP 1 Score: 388 bits (996), Expect = 3.850e-114 Identity = 478/874 (54.69%), Postives = 550/874 (62.93%), Query Frame = 2
Query: 710 VEGNESDEWSEEDNVHYLPSEIKAQFGNVVWAKSPRSAPWPGIVWDPRFLAGDKISREVARIAYASLGKSHLIKFYDKGR-SFAPIPYKNLTPFDPADLPTHLKLCNTSKKKELLKEDVQTALEAAQLPRSERLADMHQVGRFSAVKKPKKTPAK--KPPKSKSAAASPAEDRTAKRGRGRPRKHT--VKALEEDAPSAPSSGA-EYELEVPVAEENKEEDQEDPMVDEDSGEGMGRGGRSGXXXXXXXXXXXXXXXXXXXXXXXXXXYVAEGDPDAXXXEDKFLDESFAKTKGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKQTGKTMVPGEAKARAIASVKAYIATLPPLEIGRDEGLVAMKEEA------RGGXXXXXXXXXXXXXAEGQGREKKP---------KAVKSSXXXXXXXXXXXKQRLSEMKSSSEPVWKQARARMQEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAIEGRVQTGRKLTQRLGKASAESRFNKEEVLEVLRGLGELEPSVELLQQSGCGKAVAAVRKYYSGGSQVKHNDKDIASAASTLRARWMEALGKATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGDVKAEGSATSKTGNGRDSPRLPRSSSVGGXXXXXXXXXXRKSREDVGGRYGGGRGXXXPGAGXSGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTGGIDAGIAVKEEKEKPSVVVLEEPRRRALGMLTAVLGSATAAVERCTSIEEELYSSQGKDIGKEYLRRLRTAVFSMEGSAAQRLRDKVMSEMVLPRDFATKNADELRSLAGMV 3268
+GNESDEWS+ D VHYLP E+KAQFG VVWAK + PWP +VWDPRFL DK++R VAR+AYA++GKSHL+KFY + SFA +PYK + PFD +LPTHLK CN +KKK+ LKEDVQTA+EA+ L +SERLA++H VGR++ KK TP K S++ A+ AE KRGRGRPRK VK L+ D PS SSG EYEL VP AEE E XXXXXXXXXXXXXXXXXXXXXXXXXXY EG XXX DK D+ F TK XXXXXXXXXXXXXXXXXXXXXXXXX ++ G +M PG AKARA+A V+ ++A LPP E GRDEG + KEEA R G XXXXXXXXXXX + + XXXXXXXXXXX ++MKSSSEP+WKQ R RM XXXXXXXXXXXXXXXXXXXXXXXXX G E +Q GRKLTQRL KA E +FNKEEVLE+L+ LGELEPS ELLQQSGCGKAVA+ RKY+SGG QVKHNDK++A+AAS+LR RWM AL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + G R P+ GG XXXXX XXX X XXXXXXXXXXXXXX XXXXXX + + V +EPRRRA+GML +VLG+ AA+ERCT IEEEL+ SQG +I KEYLRRLRTAVFSMEGS +Q+LRDKVMS V+ DF +K+ +ELR++AG+
Sbjct: 169 ADGNESDEWSDHDEVHYLPREVKAQFGQVVWAKMG-NPPWPALVWDPRFLGNDKVARGVARMAYAAVGKSHLVKFYTAAKNSFACVPYKRIKPFDATELPTHLKACNGAKKKDTLKEDVQTAVEASLLTKSERLAEIHMVGRWTGNKKNSSTPKKANNTATSRTPTAASAEP-PKKRGRGRPRKTPLPVKELDADPPSPVSSGGVEYELPVPEAEEGAEXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTVEGXXXXXXXXDKLSDKDFVATKAGRGRKKNGXXXXXXXXXXXXXXXXXXXXXXXXXTSDGGGSDTLFGGEAPGNSSGK--------------KRRQGGSMEPGRAKARALAFVREFVAGLPPTEYGRDEGWIPSKEEAAREASARAGESXXXXXXXXXXXXXXXNKRDRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQMKSSSEPIWKQHR-RMXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPPGAGAG-GNRESEIQMGRKLTQRLAKAGVEGKFNKEEVLEILQKLGELEPSRELLQQSGCGKAVASARKYFSGG-QVKHNDKEVATAASSLRTRWMNALAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------RVGEETPRSRSPKPE-TGGVAREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKETTKEVXXXXXXXXXXXXXXXXXXXSAKMSTAVAKDEPRRRAMGMLMSVLGTTAAALERCTEIEEELHQSQGGEISKEYLRRLRTAVFSMEGSDSQKLRDKVMSGYVVSSDFVSKSCEELRAMAGLT 1008 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1152.982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1152.982.1 >prot_H-paniculata_contig1152.982.1 ID=prot_H-paniculata_contig1152.982.1|Name=mRNA_H-paniculata_contig1152.982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1057bp MARERGSNPTRRGPSRSGRASFEQDGSSNAGTENDSDEQPHTSEQQRSGMback to top mRNA from alignment at H-paniculata_contig1152:7245..24033+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1152.982.1 ID=mRNA_H-paniculata_contig1152.982.1|Name=mRNA_H-paniculata_contig1152.982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16789bp|location=Sequence derived from alignment at H-paniculata_contig1152:7245..24033+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1152:7245..24033+ >mRNA_H-paniculata_contig1152.982.1 ID=mRNA_H-paniculata_contig1152.982.1|Name=mRNA_H-paniculata_contig1152.982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6342bp|location=Sequence derived from alignment at H-paniculata_contig1152:7245..24033+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |